kalenislims/lims/sample.py

5305 lines
200 KiB
Python

# -*- coding: utf-8 -*-
# This file is part of lims module for Tryton.
# The COPYRIGHT file at the top level of this repository contains
# the full copyright notices and license terms.
import sys
import logging
import operator
from datetime import datetime
from dateutil.relativedelta import relativedelta
from trytond.model import ModelView, ModelSQL, fields, Unique
from trytond.wizard import Wizard, StateTransition, StateView, StateAction, \
Button
from trytond.pool import Pool
from trytond.pyson import PYSONEncoder, Eval, Equal, Bool, Not, Or
from trytond.transaction import Transaction
from trytond.report import Report
from trytond.exceptions import UserError
from trytond.i18n import gettext
__all__ = ['Zone', 'Variety', 'MatrixVariety', 'PackagingIntegrity',
'PackagingType', 'FractionType', 'SampleProducer', 'Service',
'Fraction', 'Sample', 'DuplicateSampleStart', 'DuplicateSample',
'DuplicateSampleFromEntryStart', 'DuplicateSampleFromEntry',
'ManageServices', 'CompleteServices', 'EditSampleServiceStart',
'EditSampleService', 'FractionsByLocationsStart', 'FractionsByLocations',
'CountersampleStorageStart', 'CountersampleStorageEmpty',
'CountersampleStorageResult', 'CountersampleStorage',
'CountersampleStorageRevertStart', 'CountersampleStorageRevertEmpty',
'CountersampleStorageRevertResult', 'CountersampleStorageRevert',
'CountersampleDischargeStart', 'CountersampleDischargeEmpty',
'CountersampleDischargeResult', 'CountersampleDischarge',
'FractionDischargeStart', 'FractionDischargeEmpty',
'FractionDischargeResult', 'FractionDischarge',
'FractionDischargeRevertStart', 'FractionDischargeRevertEmpty',
'FractionDischargeRevertResult', 'FractionDischargeRevert',
'CreateSampleStart', 'CreateSampleService', 'CreateSample',
'CountersampleStoragePrintStart', 'CountersampleStoragePrint',
'CountersampleStorageReport', 'CountersampleDischargePrintStart',
'CountersampleDischargePrint', 'CountersampleDischargeReport']
class Zone(ModelSQL, ModelView):
'Zone/Region'
__name__ = 'lims.zone'
_rec_name = 'description'
code = fields.Char('Code', required=True)
description = fields.Char('Description', required=True)
restricted_entry = fields.Boolean('Restricted entry')
@classmethod
def __setup__(cls):
super(Zone, cls).__setup__()
t = cls.__table__()
cls._sql_constraints += [
('code_uniq', Unique(t, t.code),
'lims.msg_zone_code_unique_id'),
]
def get_rec_name(self, name):
if self.code:
return self.code + ' - ' + self.description
else:
return self.description
@classmethod
def search_rec_name(cls, name, clause):
field = None
for field in ('code', 'description'):
records = cls.search([(field,) + tuple(clause[1:])], limit=1)
if records:
break
if records:
return [(field,) + tuple(clause[1:])]
return [(cls._rec_name,) + tuple(clause[1:])]
class Variety(ModelSQL, ModelView):
'Variety'
__name__ = 'lims.variety'
_rec_name = 'description'
code = fields.Char('Code', required=True)
description = fields.Char('Description', required=True)
varieties = fields.One2Many('lims.matrix.variety', 'variety',
'Product Type - Matrix')
@classmethod
def __setup__(cls):
super(Variety, cls).__setup__()
t = cls.__table__()
cls._sql_constraints += [
('code_uniq', Unique(t, t.code),
'lims.msg_variety_code_unique_id'),
]
def get_rec_name(self, name):
if self.code:
return self.code + ' - ' + self.description
else:
return self.description
@classmethod
def search_rec_name(cls, name, clause):
field = None
for field in ('code', 'description'):
records = cls.search([(field,) + tuple(clause[1:])], limit=1)
if records:
break
if records:
return [(field,) + tuple(clause[1:])]
return [(cls._rec_name,) + tuple(clause[1:])]
class MatrixVariety(ModelSQL, ModelView):
'Product Type - Matrix - Variety'
__name__ = 'lims.matrix.variety'
product_type = fields.Many2One('lims.product.type', 'Product type',
required=True)
matrix = fields.Many2One('lims.matrix', 'Matrix', required=True)
variety = fields.Many2One('lims.variety', 'Variety', required=True)
class PackagingIntegrity(ModelSQL, ModelView):
'Packaging Integrity'
__name__ = 'lims.packaging.integrity'
_rec_name = 'description'
code = fields.Char('Code', required=True)
description = fields.Char('Description', required=True, translate=True)
@classmethod
def __setup__(cls):
super(PackagingIntegrity, cls).__setup__()
t = cls.__table__()
cls._sql_constraints += [
('code_uniq', Unique(t, t.code),
'lims.msg_packaging_integrity_code_unique_id'),
]
def get_rec_name(self, name):
if self.code:
return self.code + ' - ' + self.description
else:
return self.description
@classmethod
def search_rec_name(cls, name, clause):
field = None
for field in ('code', 'description'):
records = cls.search([(field,) + tuple(clause[1:])], limit=1)
if records:
break
if records:
return [(field,) + tuple(clause[1:])]
return [(cls._rec_name,) + tuple(clause[1:])]
class PackagingType(ModelSQL, ModelView):
'Packaging Type'
__name__ = 'lims.packaging.type'
_rec_name = 'description'
code = fields.Char('Code', required=True)
description = fields.Char('Description', required=True, translate=True)
@classmethod
def __setup__(cls):
super(PackagingType, cls).__setup__()
t = cls.__table__()
cls._sql_constraints += [
('code_uniq', Unique(t, t.code),
'lims.msg_packaging_type_code_unique_id'),
]
def get_rec_name(self, name):
if self.code:
return self.code + ' - ' + self.description
else:
return self.description
@classmethod
def search_rec_name(cls, name, clause):
field = None
for field in ('code', 'description'):
records = cls.search([(field,) + tuple(clause[1:])], limit=1)
if records:
break
if records:
return [(field,) + tuple(clause[1:])]
return [(cls._rec_name,) + tuple(clause[1:])]
class FractionType(ModelSQL, ModelView):
'Fraction Type'
__name__ = 'lims.fraction.type'
_rec_name = 'description'
code = fields.Char('Code', required=True, translate=True)
description = fields.Char('Description', required=True, translate=True)
max_storage_time = fields.Integer('Maximum storage time (in months)')
requalify = fields.Boolean('Requalify')
control_charts = fields.Boolean('Available for Control Charts')
report = fields.Boolean('Available for Results Report')
plannable = fields.Boolean('Plannable', select=True)
default_package_type = fields.Many2One('lims.packaging.type',
'Default Package type')
default_fraction_state = fields.Many2One('lims.packaging.integrity',
'Default Fraction state')
cie_fraction_type = fields.Boolean('Available for Blind Samples')
default_storage_location = fields.Many2One('stock.location',
'Default Storage location', domain=[('type', '=', 'storage')])
@classmethod
def __setup__(cls):
super(FractionType, cls).__setup__()
t = cls.__table__()
cls._order.insert(0, ('code', 'ASC'))
cls._sql_constraints += [
('code_uniq', Unique(t, t.code),
'lims.msg_fraction_type_code_unique_id'),
]
@staticmethod
def default_requalify():
return False
@staticmethod
def default_control_charts():
return False
@staticmethod
def default_report():
return True
@staticmethod
def default_plannable():
return True
def get_rec_name(self, name):
if self.code:
return self.code + ' - ' + self.description
else:
return self.description
@classmethod
def search_rec_name(cls, name, clause):
field = None
for field in ('code', 'description'):
records = cls.search([(field,) + tuple(clause[1:])], limit=1)
if records:
break
if records:
return [(field,) + tuple(clause[1:])]
return [(cls._rec_name,) + tuple(clause[1:])]
class SampleProducer(ModelSQL, ModelView):
'Sample Producer'
__name__ = 'lims.sample.producer'
party = fields.Many2One('party.party', 'Party', required=True)
name = fields.Char('Name', required=True)
class Service(ModelSQL, ModelView):
'Service'
__name__ = 'lims.service'
_rec_name = 'number'
number = fields.Char('Number', select=True, readonly=True)
create_date2 = fields.Function(fields.DateTime('Create Date'),
'get_create_date2', searcher='search_create_date2')
fraction = fields.Many2One('lims.fraction', 'Fraction', required=True,
ondelete='CASCADE', select=True, depends=['number'],
states={'readonly': Or(Bool(Eval('number')),
Bool(Eval('context', {}).get('readonly', True))),
})
fraction_view = fields.Function(fields.Many2One('lims.fraction',
'Fraction', states={'invisible': Not(Bool(Eval('_parent_fraction')))}),
'on_change_with_fraction_view')
sample = fields.Function(fields.Many2One('lims.sample', 'Sample'),
'get_fraction_field', setter='set_fraction_field',
searcher='search_fraction_field')
entry = fields.Function(fields.Many2One('lims.entry', 'Entry'),
'get_fraction_field',
searcher='search_fraction_field')
party = fields.Function(fields.Many2One('party.party', 'Party'),
'get_fraction_field',
searcher='search_fraction_field')
analysis = fields.Many2One('lims.analysis', 'Analysis/Set/Group',
required=True, select=True, depends=['analysis_domain'],
domain=['OR', ('id', '=', Eval('analysis')),
('id', 'in', Eval('analysis_domain'))],
states={'readonly': Bool(Eval('context', {}).get('readonly', True))})
analysis_view = fields.Function(fields.Many2One('lims.analysis',
'Analysis/Set/Group'), 'get_views_field',
searcher='search_views_field')
analysis_domain = fields.Function(fields.Many2Many('lims.analysis',
None, None, 'Analysis domain'),
'on_change_with_analysis_domain')
typification_domain = fields.Function(fields.Many2Many(
'lims.typification', None, None, 'Typification domain'),
'on_change_with_typification_domain')
analysis_type = fields.Function(fields.Selection([
('analysis', 'Analysis'),
('set', 'Set'),
('group', 'Group'),
], 'Type', sort=False),
'on_change_with_analysis_type', searcher='search_analysis_field')
urgent = fields.Boolean('Urgent')
priority = fields.Integer('Priority')
report_date = fields.Date('Date agreed for result')
laboratory = fields.Many2One('lims.laboratory', 'Laboratory',
domain=[('id', 'in', Eval('laboratory_domain'))],
states={
'required': Bool(Eval('laboratory_domain')),
'readonly': Bool(Eval('context', {}).get('readonly', True)),
},
depends=['laboratory_domain'])
laboratory_view = fields.Function(fields.Many2One('lims.laboratory',
'Laboratory'), 'get_views_field')
laboratory_domain = fields.Function(fields.Many2Many('lims.laboratory',
None, None, 'Laboratory domain'),
'on_change_with_laboratory_domain')
method = fields.Many2One('lims.lab.method', 'Method',
domain=['OR', ('id', '=', Eval('method')),
('id', 'in', Eval('method_domain'))],
states={
'required': Bool(Eval('method_domain')),
'readonly': Bool(Eval('context', {}).get('readonly', True)),
},
depends=['method_domain'])
method_view = fields.Function(fields.Many2One('lims.lab.method',
'Method'), 'get_views_field')
method_domain = fields.Function(fields.Many2Many('lims.lab.method',
None, None, 'Method domain'), 'on_change_with_method_domain')
device = fields.Many2One('lims.lab.device', 'Device',
domain=['OR', ('id', '=', Eval('device')),
('id', 'in', Eval('device_domain'))],
states={
'required': Bool(Eval('device_domain')),
'readonly': Bool(Eval('context', {}).get('readonly', True)),
},
depends=['device_domain'])
device_view = fields.Function(fields.Many2One('lims.lab.device',
'Device'), 'get_views_field')
device_domain = fields.Function(fields.Many2Many('lims.lab.device',
None, None, 'Device domain'), 'on_change_with_device_domain')
comments = fields.Text('Comments',
states={'readonly': Bool(Eval('context', {}).get('readonly', True))})
analysis_detail = fields.One2Many('lims.entry.detail.analysis',
'service', 'Analysis detail')
confirmed = fields.Function(fields.Boolean('Confirmed'), 'get_confirmed',
searcher='search_confirmed')
confirmation_date = fields.Date('Confirmation date', readonly=True)
divide = fields.Boolean('Divide')
has_results_report = fields.Function(fields.Boolean('Results Report'),
'get_has_results_report')
manage_service_available = fields.Function(fields.Boolean(
'Available for Manage services'), 'get_manage_service_available')
icon = fields.Function(fields.Char("Icon"), 'get_icon')
planned = fields.Function(fields.Boolean('Planned'), 'get_planned',
searcher='search_planned')
@classmethod
def __setup__(cls):
super(Service, cls).__setup__()
cls._order.insert(0, ('number', 'DESC'))
@staticmethod
def default_urgent():
return False
@staticmethod
def default_priority():
return 0
@staticmethod
def default_divide():
return False
@classmethod
def validate(cls, services):
super(Service, cls).validate(services)
for service in services:
service.check_duplicated_analysis()
def check_duplicated_analysis(self):
Analysis = Pool().get('lims.analysis')
fraction_id = self.fraction.id
services = self.search([
('fraction', '=', fraction_id),
('id', '!=', self.id)
])
if services:
analysis_ids = []
for service in services:
if service.analysis:
analysis_ids.append(service.analysis.id)
analysis_ids.extend(Analysis.get_included_analysis(
service.analysis.id))
new_analysis_ids = [self.analysis.id]
new_analysis_ids.extend(Analysis.get_included_analysis(
self.analysis.id))
for a_id in new_analysis_ids:
if a_id in analysis_ids:
analysis = Analysis(a_id)
raise UserError(gettext(
'lims.msg_duplicated_analysis_service',
analysis=analysis.rec_name,
fraction=self.fraction.rec_name,
))
@classmethod
def create(cls, vlist):
pool = Pool()
LabWorkYear = pool.get('lims.lab.workyear')
Sequence = pool.get('ir.sequence')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
workyear_id = LabWorkYear.find()
workyear = LabWorkYear(workyear_id)
sequence = workyear.get_sequence('service')
if not sequence:
raise UserError(gettext('lims.msg_no_service_sequence',
work_year=workyear.rec_name))
vlist = [x.copy() for x in vlist]
for values in vlist:
values['number'] = Sequence.get_id(sequence.id)
services = super(Service, cls).create(vlist)
if not Transaction().context.get('copying', False):
cls.update_analysis_detail(services)
aditional_services = cls.create_aditional_services(services)
# Aditional processing for Manage Services
if aditional_services and Transaction().context.get(
'manage_service', False):
cls.copy_analysis_comments(aditional_services)
cls.set_confirmation_date(aditional_services)
analysis_detail = EntryDetailAnalysis.search([
('service', 'in', [s.id for s in aditional_services])])
if analysis_detail:
fraction = analysis_detail[0].fraction
EntryDetailAnalysis.create_notebook_lines(analysis_detail,
fraction)
EntryDetailAnalysis.write(analysis_detail, {
'state': 'unplanned',
})
# from lims_account_invoice
if 'trytond.modules.lims_account_invoice' in sys.modules:
for aditional_service in aditional_services:
aditional_service.create_invoice_line('out')
fractions_ids = list(set(s.fraction.id for s in services))
cls.set_shared_fraction(fractions_ids)
return services
@classmethod
def write(cls, *args):
super(Service, cls).write(*args)
actions = iter(args)
for services, vals in zip(actions, actions):
change_detail = False
for field in ('analysis', 'laboratory', 'method', 'device'):
if vals.get(field):
change_detail = True
break
if change_detail:
cls.update_analysis_detail(services)
fractions_ids = list(set(s.fraction.id for s in services))
cls.set_shared_fraction(fractions_ids)
@classmethod
def delete(cls, services):
if Transaction().user != 0:
cls.check_delete(services)
fractions_ids = list(set(s.fraction.id for s in services))
super(Service, cls).delete(services)
cls.set_shared_fraction(fractions_ids)
@classmethod
def check_delete(cls, services):
for service in services:
if service.fraction and service.fraction.confirmed:
raise UserError(gettext(
'lims.msg_delete_service', service=service.rec_name))
@staticmethod
def update_analysis_detail(services):
pool = Pool()
Service = pool.get('lims.service')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
for service in services:
to_delete = EntryDetailAnalysis.search([
('service', '=', service.id),
])
if to_delete:
with Transaction().set_user(0, set_context=True):
EntryDetailAnalysis.delete(to_delete)
if service.analysis.behavior == 'additional':
continue
to_create = []
service_context = {
'product_type': service.fraction.product_type.id,
'matrix': service.fraction.matrix.id,
}
analysis_data = []
if service.analysis.type == 'analysis':
laboratory_id = service.laboratory.id
method_id = service.method.id if service.method else None
device_id = service.device.id if service.device else None
analysis_data.append({
'id': service.analysis.id,
'origin': service.analysis.code,
'laboratory': laboratory_id,
'method': method_id,
'device': device_id,
})
else:
analysis_data.extend(Service._get_included_analysis(
service.analysis, service.analysis.code,
service_context))
if analysis_data:
for analysis in analysis_data:
values = {}
values['service'] = service.id
values['analysis'] = analysis['id']
values['analysis_origin'] = analysis['origin']
values['laboratory'] = analysis['laboratory']
values['method'] = analysis['method']
values['device'] = analysis['device']
to_create.append(values)
if to_create:
with Transaction().set_user(0, set_context=True):
EntryDetailAnalysis.create(to_create)
@staticmethod
def _get_included_analysis(analysis, analysis_origin='',
service_context=None):
Typification = Pool().get('lims.typification')
childs = []
if analysis.included_analysis:
for included in analysis.included_analysis:
if (analysis.type == 'set' and
included.included_analysis.type == 'analysis'):
origin = analysis_origin
else:
origin = (analysis_origin + ' > ' +
included.included_analysis.code)
if included.included_analysis.type == 'analysis':
laboratory_id = included.laboratory.id
typifications = Typification.search([
('product_type', '=', service_context['product_type']),
('matrix', '=', service_context['matrix']),
('analysis', '=', included.included_analysis),
('by_default', '=', True),
('valid', '=', True),
])
method_id = (typifications[0].method.id if typifications
else None)
device_id = None
if included.included_analysis.devices:
for d in included.included_analysis.devices:
if (d.laboratory.id == laboratory_id and
d.by_default is True):
device_id = d.device.id
childs.append({
'id': included.included_analysis.id,
'origin': origin,
'laboratory': laboratory_id,
'method': method_id,
'device': device_id,
})
childs.extend(Service._get_included_analysis(
included.included_analysis, origin, service_context))
return childs
@staticmethod
def create_aditional_services(services):
cursor = Transaction().connection.cursor()
pool = Pool()
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
Typification = pool.get('lims.typification')
AnalysisLaboratory = pool.get('lims.analysis-laboratory')
AnalysisDevice = pool.get('lims.analysis.device')
Service = pool.get('lims.service')
aditional_services = {}
for service in services:
entry_details = EntryDetailAnalysis.search([
('service', '=', service.id),
])
for detail in entry_details:
typifications = Typification.search([
('product_type', '=', service.fraction.product_type.id),
('matrix', '=', service.fraction.matrix.id),
('analysis', '=', detail.analysis.id),
('method', '=', detail.method),
('valid', '=', True),
])
if not typifications:
continue
typification = typifications[0]
if typification.additional:
if service.fraction.id not in aditional_services:
aditional_services[service.fraction.id] = {}
if (typification.additional.id not in
aditional_services[service.fraction.id]):
aditional_services[service.fraction.id][
typification.additional.id] = {
'laboratory': None,
'method': None,
'device': None,
}
if typification.additionals:
if service.fraction.id not in aditional_services:
aditional_services[service.fraction.id] = {}
for additional in typification.additionals:
if (additional.id not in
aditional_services[service.fraction.id]):
cursor.execute('SELECT laboratory '
'FROM "' + AnalysisLaboratory._table + '" '
'WHERE analysis = %s', (additional.id,))
res = cursor.fetchone()
laboratory_id = res and res[0] or None
cursor.execute('SELECT method '
'FROM "' + Typification._table + '" '
'WHERE product_type = %s '
'AND matrix = %s '
'AND analysis = %s '
'AND valid IS TRUE '
'AND by_default IS TRUE',
(service.fraction.product_type.id,
service.fraction.matrix.id, additional.id))
res = cursor.fetchone()
method_id = res and res[0] or None
cursor.execute('SELECT device '
'FROM "' + AnalysisDevice._table + '" '
'WHERE active IS TRUE '
'AND analysis = %s '
'AND laboratory = %s '
'AND by_default IS TRUE',
(additional.id, laboratory_id))
res = cursor.fetchone()
device_id = res and res[0] or None
aditional_services[service.fraction.id][
additional.id] = {
'laboratory': laboratory_id,
'method': method_id,
'device': device_id,
}
if aditional_services:
services_default = []
for fraction_id, analysis in aditional_services.items():
for analysis_id, service_data in analysis.items():
if not Service.search([
('fraction', '=', fraction_id),
('analysis', '=', analysis_id),
]):
services_default.append({
'fraction': fraction_id,
'analysis': analysis_id,
'laboratory': service_data['laboratory'],
'method': service_data['method'],
'device': service_data['device'],
})
return Service.create(services_default)
@classmethod
def set_shared_fraction(cls, fractions_ids):
pool = Pool()
Fraction = pool.get('lims.fraction')
fractions = Fraction.search([
('id', 'in', fractions_ids),
])
for fraction in fractions:
shared = False
labs = []
for s in fraction.services:
if not s.analysis:
continue
if s.analysis.type == 'analysis':
if s.analysis.behavior == 'additional':
continue
labs.append(s.laboratory.id)
else:
labs.extend(cls._get_analysis_included_labs(s.analysis))
if len(set(labs)) > 1:
shared = True
if fraction.shared != shared:
Fraction.write([fraction], {'shared': shared})
@classmethod
def _get_analysis_included_labs(cls, analysis):
childs = []
if analysis.included_analysis:
for included in analysis.included_analysis:
if included.included_analysis.type == 'analysis':
childs.append(included.laboratory.id)
childs.extend(cls._get_analysis_included_labs(
included.included_analysis))
return childs
@classmethod
def view_attributes(cls):
return [
('//group[@id="invisible_fields"]', 'states', {
'invisible': True,
}),
]
@classmethod
def copy(cls, services, default=None):
EntryDetailAnalysis = Pool().get('lims.entry.detail.analysis')
if default is None:
default = {}
current_default = default.copy()
current_default['confirmation_date'] = None
current_default['analysis_detail'] = None
detail_default = {}
if current_default.get('method', None):
detail_default['method'] = current_default['method']
if current_default.get('device', None):
detail_default['device'] = current_default['device']
new_services = []
for service in sorted(services, key=lambda x: x.number):
with Transaction().set_context(copying=True):
new_service, = super(Service, cls).copy([service],
default=current_default)
detail_default['service'] = new_service.id
EntryDetailAnalysis.copy(service.analysis_detail,
default=detail_default)
new_services.append(new_service)
return new_services
@staticmethod
def copy_analysis_comments(services):
pool = Pool()
Fraction = pool.get('lims.fraction')
comments = {}
for service in services:
if service.analysis.comments:
fraction_id = service.fraction.id
if fraction_id not in comments:
comments[fraction_id] = ''
if comments[fraction_id]:
comments[fraction_id] += '\n'
comments[fraction_id] += service.analysis.comments
if comments:
fractions_to_save = []
for fraction_id, comment in comments.items():
fraction = Fraction(fraction_id)
if fraction.comments:
fraction.comments += '\n' + comment
else:
fraction.comments = comment
fractions_to_save.append(fraction)
if fractions_to_save:
Fraction.save(fractions_to_save)
@staticmethod
def set_confirmation_date(services, confirmation_date=None):
pool = Pool()
Date = pool.get('ir.date')
Service = pool.get('lims.service')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
if not confirmation_date:
confirmation_date = Date.today()
Service.write(services, {
'confirmation_date': confirmation_date,
})
analysis_details = EntryDetailAnalysis.search([
('service', 'in', [s.id for s in services]),
])
if analysis_details:
EntryDetailAnalysis.write(analysis_details, {
'confirmation_date': confirmation_date,
})
@fields.depends('analysis', 'fraction', 'typification_domain',
'laboratory', '_parent_fraction.id',
methods=['on_change_with_laboratory_domain',
'on_change_with_method_domain', '_on_change_with_device_domain'])
def on_change_analysis(self):
Laboratory = Pool().get('lims.laboratory')
laboratory = None
method = None
device = None
if self.analysis:
laboratories = self.on_change_with_laboratory_domain()
if len(laboratories) == 1:
laboratory = laboratories[0]
methods = self.on_change_with_method_domain()
if len(methods) == 1:
method = methods[0]
devices = self._on_change_with_device_domain(self.analysis,
Laboratory(laboratory), True)
if len(devices) == 1:
device = devices[0]
self.laboratory = laboratory
self.method = method
self.device = device
@staticmethod
def default_analysis_domain():
return Transaction().context.get('analysis_domain', [])
@fields.depends('fraction', '_parent_fraction.id')
def on_change_with_analysis_domain(self, name=None):
if Transaction().context.get('analysis_domain'):
return Transaction().context.get('analysis_domain')
return []
@staticmethod
def default_typification_domain():
return Transaction().context.get('typification_domain', [])
@fields.depends('fraction', '_parent_fraction.id')
def on_change_with_typification_domain(self, name=None):
if Transaction().context.get('typification_domain'):
return Transaction().context.get('typification_domain')
return []
@fields.depends('analysis', '_parent_analysis.type')
def on_change_with_analysis_type(self, name=None):
if self.analysis:
return self.analysis.type
return ''
@staticmethod
def default_fraction_view():
if (Transaction().context.get('fraction', 0) > 0):
return Transaction().context.get('fraction')
return None
@fields.depends('fraction', '_parent_fraction.id')
def on_change_with_fraction_view(self, name=None):
if self.fraction:
return self.fraction.id
return None
@staticmethod
def default_sample():
if (Transaction().context.get('sample', 0) > 0):
return Transaction().context.get('sample')
return None
@fields.depends('fraction', '_parent_fraction.sample')
def on_change_with_sample(self, name=None):
if self.fraction:
result = self.get_fraction_field((self,), ('sample',))
return result['sample'][self.id]
return None
@staticmethod
def default_entry():
if (Transaction().context.get('entry', 0) > 0):
return Transaction().context.get('entry')
return None
@fields.depends('fraction', '_parent_fraction.entry')
def on_change_with_entry(self, name=None):
if self.fraction:
result = self.get_fraction_field((self,), ('entry',))
return result['entry'][self.id]
return None
@staticmethod
def default_party():
if (Transaction().context.get('party', 0) > 0):
return Transaction().context.get('party')
return None
@fields.depends('fraction', '_parent_fraction.party')
def on_change_with_party(self, name=None):
if self.fraction:
result = self.get_fraction_field((self,), ('party',))
return result['party'][self.id]
return None
@fields.depends('analysis', 'laboratory',
methods=['_on_change_with_device_domain'])
def on_change_laboratory(self):
device = None
if self.analysis and self.laboratory:
devices = self._on_change_with_device_domain(self.analysis,
self.laboratory, True)
if len(devices) == 1:
device = devices[0]
self.device = device
@fields.depends('analysis')
def on_change_with_laboratory_domain(self, name=None):
cursor = Transaction().connection.cursor()
AnalysisLaboratory = Pool().get('lims.analysis-laboratory')
if not self.analysis:
return []
cursor.execute('SELECT DISTINCT(laboratory) '
'FROM "' + AnalysisLaboratory._table + '" '
'WHERE analysis = %s',
(self.analysis.id,))
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
@fields.depends('analysis', 'typification_domain')
def on_change_with_method_domain(self, name=None):
cursor = Transaction().connection.cursor()
Typification = Pool().get('lims.typification')
if not self.analysis:
return []
typification_ids = ', '.join(str(t) for t in
self.on_change_with_typification_domain())
if not typification_ids:
return []
cursor.execute('SELECT DISTINCT(method) '
'FROM "' + Typification._table + '" '
'WHERE id IN (' + typification_ids + ') '
'AND analysis = %s',
(self.analysis.id,))
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
@fields.depends('analysis', 'laboratory',
methods=['_on_change_with_device_domain'])
def on_change_with_device_domain(self, name=None):
return self._on_change_with_device_domain(self.analysis,
self.laboratory)
@staticmethod
def _on_change_with_device_domain(analysis=None, laboratory=None,
by_default=False):
cursor = Transaction().connection.cursor()
AnalysisDevice = Pool().get('lims.analysis.device')
if not analysis or not laboratory:
return []
if by_default:
by_default_clause = 'AND by_default IS TRUE'
else:
by_default_clause = ''
cursor.execute('SELECT DISTINCT(device) '
'FROM "' + AnalysisDevice._table + '" '
'WHERE active IS TRUE '
'AND analysis = %s '
'AND laboratory = %s ' +
by_default_clause,
(analysis.id, laboratory.id))
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
@classmethod
def get_views_field(cls, services, names):
result = {}
for name in names:
field_name = name[:-5]
result[name] = {}
for s in services:
field = getattr(s, field_name, None)
result[name][s.id] = field.id if field else None
return result
@classmethod
def search_views_field(cls, name, clause):
return [(name[:-5],) + tuple(clause[1:])]
@classmethod
def search_analysis_field(cls, name, clause):
if name == 'analysis_type':
name = 'type'
return [('analysis.' + name,) + tuple(clause[1:])]
@classmethod
def search_create_date2(cls, name, clause):
cursor = Transaction().connection.cursor()
operator_ = clause[1:2][0]
cursor.execute('SELECT id '
'FROM "' + cls._table + '" '
'WHERE create_date' + operator_ + ' %s',
clause[2:3])
return [('id', 'in', [x[0] for x in cursor.fetchall()])]
@classmethod
def get_fraction_field(cls, services, names):
result = {}
for name in names:
result[name] = {}
if name == 'label':
for s in services:
result[name][s.id] = getattr(s.fraction, name, None)
else:
for s in services:
field = getattr(s.fraction, name, None)
result[name][s.id] = field.id if field else None
return result
@classmethod
def set_fraction_field(cls, records, name, value):
return
def get_create_date2(self, name):
return self.create_date.replace(microsecond=0)
@classmethod
def search_fraction_field(cls, name, clause):
return [('fraction.' + name,) + tuple(clause[1:])]
@classmethod
def order_create_date2(cls, tables):
return cls.create_date.convert_order('create_date', tables, cls)
def _order_analysis_field(name):
def order_field(tables):
Analysis = Pool().get('lims.analysis')
field = Analysis._fields[name]
table, _ = tables[None]
analysis_tables = tables.get('analysis')
if analysis_tables is None:
analysis = Analysis.__table__()
analysis_tables = {
None: (analysis, analysis.id == table.analysis),
}
tables['analysis'] = analysis_tables
return field.convert_order(name, analysis_tables, Analysis)
return staticmethod(order_field)
# Redefine convert_order function with 'order_%s' % field
order_analysis_view = _order_analysis_field('id')
order_analysis_type = _order_analysis_field('type')
def _order_fraction_field(name):
def order_field(tables):
Fraction = Pool().get('lims.fraction')
field = Fraction._fields[name]
table, _ = tables[None]
fraction_tables = tables.get('fraction')
if fraction_tables is None:
fraction = Fraction.__table__()
fraction_tables = {
None: (fraction, fraction.id == table.fraction),
}
tables['fraction'] = fraction_tables
return field.convert_order(name, fraction_tables, Fraction)
return staticmethod(order_field)
# Redefine convert_order function with 'order_%s' % field
order_sample = _order_fraction_field('sample')
order_entry = _order_fraction_field('entry')
order_party = _order_fraction_field('party')
def get_confirmed(self, name=None):
if self.fraction:
return self.fraction.confirmed
return False
@classmethod
def search_confirmed(cls, name, clause):
return [('fraction.confirmed',) + tuple(clause[1:])]
@classmethod
def get_has_results_report(cls, services, names):
cursor = Transaction().connection.cursor()
NotebookLine = Pool().get('lims.notebook.line')
result = {}
for name in names:
result[name] = {}
for s in services:
cursor.execute('SELECT service '
'FROM "' + NotebookLine._table + '" '
'WHERE service = %s '
'AND results_report IS NOT NULL',
(s.id,))
value = False
if cursor.fetchone():
value = True
result[name][s.id] = value
return result
def get_manage_service_available(self, name=None):
NotebookLine = Pool().get('lims.notebook.line')
planned_notebook_lines = NotebookLine.search([
('service', '=', self.id),
('planification', '!=', None),
])
if planned_notebook_lines:
return False
return True
def get_icon(self, name):
if self.has_results_report:
return 'lims-green'
if not self.confirmed:
return 'lims-red'
return 'lims-white'
def get_planned(self, name):
if not self.analysis_detail:
return False
for ad in self.analysis_detail:
if (ad.state in ('draft', 'unplanned') and
ad.analysis.behavior != 'internal_relation'):
return False
return True
@classmethod
def search_planned(cls, name, clause):
cursor = Transaction().connection.cursor()
pool = Pool()
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
Analysis = pool.get('lims.analysis')
cursor.execute('SELECT DISTINCT(d.service) '
'FROM "' + EntryDetailAnalysis._table + '" d '
'INNER JOIN "' + Analysis._table + '" a '
'ON a.id = d.analysis '
'WHERE d.state IN (\'draft\', \'unplanned\') '
'AND a.behavior != \'internal_relation\'')
not_planned_ids = [s[0] for s in cursor.fetchall()]
field, op, operand = clause
if (op, operand) in (('=', True), ('!=', False)):
return [('id', 'not in', not_planned_ids)]
elif (op, operand) in (('=', False), ('!=', True)):
return [('id', 'in', not_planned_ids)]
else:
return []
class Fraction(ModelSQL, ModelView):
'Fraction'
__name__ = 'lims.fraction'
_rec_name = 'number'
number = fields.Char('Number', select=True, readonly=True)
create_date2 = fields.Function(fields.DateTime('Create Date'),
'get_create_date2', searcher='search_create_date2')
sample = fields.Many2One('lims.sample', 'Sample', required=True,
ondelete='CASCADE', select=True, depends=['number'],
states={'readonly': Bool(Eval('number'))})
sample_view = fields.Function(fields.Many2One('lims.sample', 'Sample',
states={'invisible': Not(Bool(Eval('_parent_sample')))}),
'on_change_with_sample_view')
entry = fields.Function(fields.Many2One('lims.entry', 'Entry'),
'get_sample_field',
searcher='search_sample_field')
party = fields.Function(fields.Many2One('party.party', 'Party'),
'get_sample_field',
searcher='search_sample_field')
label = fields.Function(fields.Char('Label'), 'get_sample_field',
searcher='search_sample_field')
type = fields.Many2One('lims.fraction.type', 'Fraction type',
required=True, select=True)
storage_location = fields.Many2One('stock.location', 'Storage location',
required=True, domain=[('type', '=', 'storage')])
storage_time = fields.Integer('Storage time (in months)', required=True)
weight = fields.Float('Weight')
weight_uom = fields.Many2One('product.uom', 'Weight UoM',
domain=[('category.lims_only_available', '=', True)])
packages_quantity = fields.Integer('Packages quantity', required=True)
package_type = fields.Many2One('lims.packaging.type', 'Package type',
required=True)
size = fields.Float('Size')
size_uom = fields.Many2One('product.uom', 'Size UoM',
domain=[('category.lims_only_available', '=', True)])
expiry_date = fields.Date('Expiry date', states={'readonly': True})
discharge_date = fields.Date('Discharge date')
countersample_location = fields.Many2One('stock.location',
'Countersample location', readonly=True)
countersample_date = fields.Date('Countersample date', readonly=True)
fraction_state = fields.Many2One('lims.packaging.integrity',
'Fraction state', required=True)
services = fields.One2Many('lims.service', 'fraction', 'Services',
states={'readonly': Bool(Eval('button_manage_services_available'))},
context={
'analysis_domain': Eval('analysis_domain'),
'typification_domain': Eval('typification_domain'),
'product_type': Eval('product_type'), 'matrix': Eval('matrix'),
'fraction': Eval('id'), 'sample': Eval('sample'),
'entry': Eval('entry'), 'party': Eval('party'),
'readonly': False,
},
depends=['button_manage_services_available', 'analysis_domain',
'typification_domain', 'product_type', 'matrix', 'sample',
'entry', 'party',
])
shared = fields.Boolean('Shared')
comments = fields.Text('Comments')
analysis_domain = fields.Function(fields.Many2Many('lims.analysis',
None, None, 'Analysis domain'),
'on_change_with_analysis_domain')
typification_domain = fields.Function(fields.Many2Many(
'lims.typification', None, None, 'Typification domain'),
'on_change_with_typification_domain')
product_type = fields.Function(fields.Many2One('lims.product.type',
'Product type'),
'on_change_with_product_type')
matrix = fields.Function(fields.Many2One('lims.matrix', 'Matrix'),
'on_change_with_matrix')
button_manage_services_available = fields.Function(fields.Boolean(
'Button manage services available'),
'on_change_with_button_manage_services_available')
confirmed = fields.Boolean('Confirmed', select=True)
button_confirm_available = fields.Function(fields.Boolean(
'Button confirm available'),
'on_change_with_button_confirm_available')
current_location = fields.Function(fields.Many2One('stock.location',
'Current Location'), 'get_current_location',
searcher='search_current_location')
duplicated_analysis_message = fields.Text('Message', readonly=True,
states={'invisible': Not(Bool(Eval('duplicated_analysis_message')))})
has_results_report = fields.Function(fields.Boolean('Results Report'),
'get_has_results_report', searcher='search_has_results_report')
has_all_results_reported = fields.Function(fields.Boolean(
'All results reported'), 'get_has_all_results_reported')
waiting_confirmation = fields.Boolean('Waiting confirmation')
entry_state = fields.Function(fields.Selection([
('draft', 'Draft'),
('ongoing', 'Ongoing'),
('pending', 'Administration pending'),
('closed', 'Closed'),
], 'Entry State'), 'get_entry_state', searcher='search_entry_state')
icon = fields.Function(fields.Char("Icon"), 'get_icon')
special_type = fields.Function(fields.Char('Fraction type'),
'on_change_with_special_type',
searcher='search_special_type')
con_type = fields.Selection([
('', ''),
('con', 'CON'),
('coi', 'COI'),
('mrc', 'MRC'),
('sla', 'SLA'),
('itc', 'ITC'),
('itl', 'ITL'),
], 'Type', sort=False)
con_original_fraction = fields.Many2One('lims.fraction',
'Original fraction')
bmz_type = fields.Selection([
('', ''),
('sla', 'SLA'),
('noinitialbmz', 'No initial BMZ'),
], 'Type', sort=False)
bmz_product_type = fields.Many2One('lims.product.type', 'Product type')
bmz_matrix = fields.Many2One('lims.matrix', 'Matrix')
bmz_original_fraction = fields.Many2One('lims.fraction',
'Original fraction')
rm_type = fields.Selection([
('', ''),
('sla', 'SLA'),
('noinitialrm', 'No initial RM'),
], 'Type', sort=False)
rm_product_type = fields.Many2One('lims.product.type', 'Product type')
rm_matrix = fields.Many2One('lims.matrix', 'Matrix')
rm_original_fraction = fields.Many2One('lims.fraction',
'Original fraction')
bre_product_type = fields.Many2One('lims.product.type', 'Product type')
bre_matrix = fields.Many2One('lims.matrix', 'Matrix')
bre_reagents = fields.One2Many('lims.fraction.reagent', 'fraction',
'Reagents')
mrt_product_type = fields.Many2One('lims.product.type', 'Product type')
mrt_matrix = fields.Many2One('lims.matrix', 'Matrix')
cie_fraction_type_available = fields.Function(fields.Boolean(
'Available for Blind Sample'),
'on_change_with_cie_fraction_type_available')
cie_fraction_type = fields.Boolean('Blind Sample',
states={'readonly': Not(Bool(Eval('cie_fraction_type_available')))},
depends=['cie_fraction_type_available'])
cie_original_fraction = fields.Many2One('lims.fraction',
'Original fraction', states={'readonly': Bool(Eval('confirmed'))},
depends=['confirmed'])
@classmethod
def __setup__(cls):
super(Fraction, cls).__setup__()
cls._order.insert(0, ('number', 'DESC'))
cls._buttons.update({
'manage_services': {
'invisible': ~Eval('button_manage_services_available'),
},
'complete_services': {
'invisible': ~Eval('button_manage_services_available'),
},
'confirm': {
'invisible': ~Eval('button_confirm_available'),
},
'load_services': {
'invisible': Or(Bool(Eval('button_manage_services_available')),
Bool(Eval('services'))),
},
})
@staticmethod
def default_packages_quantity():
return 1
@staticmethod
def default_storage_time():
return 3
@staticmethod
def default_confirmed():
return False
@staticmethod
def default_waiting_confirmation():
return False
@classmethod
def get_next_number(cls, sample_id, f_count):
Sample = Pool().get('lims.sample')
samples = Sample.search([('id', '=', sample_id)])
sample_number = samples[0].number
fraction_number = cls.search_count([('sample', '=', sample_id)])
fraction_number += f_count
return '%s-%s' % (sample_number, fraction_number)
@classmethod
def create(cls, vlist):
vlist = [x.copy() for x in vlist]
f_count = {}
for values in vlist:
if not values['sample'] in f_count:
f_count[values['sample']] = 0
f_count[values['sample']] += 1
values['number'] = cls.get_next_number(values['sample'],
f_count[values['sample']])
return super(Fraction, cls).create(vlist)
@classmethod
def view_attributes(cls):
return [
('//group[@id="button_confirm"]', 'states', {
'invisible': ~Eval('button_confirm_available'),
}),
('//page[@id="cie"]', 'states', {
'invisible': Not(Bool(Eval('cie_fraction_type'))),
}),
('//page[@id="mrt"]', 'states', {
'invisible': Not(Bool(Equal(Eval('special_type'), 'mrt'))),
}),
('//page[@id="bre"]', 'states', {
'invisible': Not(Bool(Equal(Eval('special_type'), 'bre'))),
}),
('//page[@id="rm"]', 'states', {
'invisible': Not(Bool(Equal(Eval('special_type'), 'rm'))),
}),
('//page[@id="bmz"]', 'states', {
'invisible': Not(Bool(Equal(Eval('special_type'), 'bmz'))),
}),
('//page[@id="con"]', 'states', {
'invisible': Not(Bool(Equal(Eval('special_type'), 'con'))),
})]
@classmethod
def copy(cls, fractions, default=None):
if default is None:
default = {}
with Transaction().set_context(_check_access=False):
new_fractions = []
for fraction in sorted(fractions, key=lambda x: x.number):
current_default = default.copy()
current_default['confirmed'] = False
current_default['waiting_confirmation'] = False
current_default['discharge_date'] = None
current_default['expiry_date'] = None
current_default['countersample_date'] = None
current_default['countersample_location'] = None
new_fraction, = super(Fraction, cls).copy([fraction],
default=current_default)
new_fractions.append(new_fraction)
return new_fractions
@classmethod
def check_delete(cls, fractions):
for fraction in fractions:
if fraction.confirmed:
raise UserError(gettext(
'lims.msg_delete_fraction', fraction=fraction.rec_name))
@classmethod
def delete(cls, fractions):
cls.check_delete(fractions)
super(Fraction, cls).delete(fractions)
@fields.depends('type', 'storage_location')
def on_change_with_storage_time(self, name=None):
if (self.type and self.type.max_storage_time):
return self.type.max_storage_time
if (self.storage_location and self.storage_location.storage_time):
return self.storage_location.storage_time
return 3
@staticmethod
def default_analysis_domain():
return Transaction().context.get('analysis_domain', [])
@fields.depends('sample', '_parent_sample.id')
def on_change_with_analysis_domain(self, name=None):
if Transaction().context.get('analysis_domain'):
return Transaction().context.get('analysis_domain')
if self.sample:
return self.sample.on_change_with_analysis_domain()
return []
@staticmethod
def default_typification_domain():
return Transaction().context.get('typification_domain', [])
@fields.depends('sample', '_parent_sample.id')
def on_change_with_typification_domain(self, name=None):
if Transaction().context.get('typification_domain'):
return Transaction().context.get('typification_domain')
if self.sample:
return self.sample.on_change_with_typification_domain()
return []
@staticmethod
def default_product_type():
return Transaction().context.get('product_type', None)
@fields.depends('sample', '_parent_sample.product_type')
def on_change_with_product_type(self, name=None):
if Transaction().context.get('product_type'):
return Transaction().context.get('product_type')
if self.sample and self.sample.product_type:
return self.sample.product_type.id
return None
@staticmethod
def default_matrix():
return Transaction().context.get('matrix', None)
@fields.depends('sample', '_parent_sample.matrix')
def on_change_with_matrix(self, name=None):
if Transaction().context.get('matrix'):
return Transaction().context.get('matrix')
if self.sample and self.sample.matrix:
return self.sample.matrix.id
return None
@staticmethod
def default_sample_view():
if (Transaction().context.get('sample', 0) > 0):
return Transaction().context.get('sample')
return None
@staticmethod
def default_cie_fraction_type():
return False
@fields.depends('type')
def on_change_with_special_type(self, name=None):
Config = Pool().get('lims.configuration')
if self.type:
config = Config(1)
if self.type == config.mcl_fraction_type:
return 'mcl'
elif self.type == config.con_fraction_type:
return 'con'
elif self.type == config.bmz_fraction_type:
return 'bmz'
elif self.type == config.rm_fraction_type:
return 'rm'
elif self.type == config.bre_fraction_type:
return 'bre'
elif self.type == config.mrt_fraction_type:
return 'mrt'
elif self.type == config.coi_fraction_type:
return 'coi'
elif self.type == config.mrc_fraction_type:
return 'mrc'
elif self.type == config.sla_fraction_type:
return 'sla'
elif self.type == config.itc_fraction_type:
return 'itc'
elif self.type == config.itl_fraction_type:
return 'itl'
return ''
@classmethod
def search_special_type(cls, name, clause):
Config = Pool().get('lims.configuration')
if clause[1] in ('=', '!='):
types = [clause[2]]
elif clause[1] in ('in', 'not in'):
types = clause[2]
else:
return []
if types:
config = Config(1)
res_type = []
for type_ in types:
if type_ == 'mcl':
res_type.append(config.mcl_fraction_type)
if type_ == 'con':
res_type.append(config.con_fraction_type)
if type_ == 'bmz':
res_type.append(config.bmz_fraction_type)
if type_ == 'rm':
res_type.append(config.rm_fraction_type)
if type_ == 'bre':
res_type.append(config.bre_fraction_type)
if type_ == 'mrt':
res_type.append(config.mrt_fraction_type)
if type_ == 'coi':
res_type.append(config.coi_fraction_type)
if type_ == 'mrc':
res_type.append(config.mrc_fraction_type)
if type_ == 'sla':
res_type.append(config.sla_fraction_type)
if type_ == 'itc':
res_type.append(config.itc_fraction_type)
if type_ == 'itl':
res_type.append(config.itl_fraction_type)
if clause[1] in ('=', '!='):
return [('type', clause[1], res_type[0])]
elif clause[1] in ('in', 'not in'):
return [('type', clause[1], res_type)]
return []
@fields.depends('sample', '_parent_sample.id')
def on_change_with_sample_view(self, name=None):
if self.sample:
return self.sample.id
return None
@staticmethod
def default_entry():
if (Transaction().context.get('entry', 0) > 0):
return Transaction().context.get('entry')
return None
@fields.depends('sample', '_parent_sample.entry')
def on_change_with_entry(self, name=None):
if self.sample:
result = self.get_sample_field((self,), ('entry',))
return result['entry'][self.id]
return None
@staticmethod
def default_party():
if (Transaction().context.get('party', 0) > 0):
return Transaction().context.get('party')
return None
@fields.depends('sample', '_parent_sample.party')
def on_change_with_party(self, name=None):
if self.sample:
result = self.get_sample_field((self,), ('party',))
return result['party'][self.id]
return None
@staticmethod
def default_label():
return Transaction().context.get('label', '')
@fields.depends('sample', 'special_type', 'con_original_fraction',
'services', 'create_date', '_parent_sample.label')
def on_change_with_label(self, name=None):
type = self.special_type
if type == 'con':
label = ''
if self.con_original_fraction:
label += self.con_original_fraction.label
if self.services:
if self.services[0].analysis:
label += ' ' + self.services[0].analysis.code
if self.create_date:
label += ' ' + str(datetime.date(self.create_date))
return label
elif type == 'bmz':
label = 'BMZ'
if self.services:
if self.services[0].analysis:
label += ' ' + self.services[0].analysis.code
if self.create_date:
label += ' ' + str(datetime.date(self.create_date))
return label
elif type == 'rm':
label = 'RM'
if self.services:
if self.services[0].analysis:
label += ' ' + self.services[0].analysis.code
if self.create_date:
label += ' ' + str(datetime.date(self.create_date))
return label
elif type == 'bre':
label = 'BRE'
if self.services:
if self.services[0].analysis:
label += ' ' + self.services[0].analysis.code
if self.create_date:
label += ' ' + str(datetime.date(self.create_date))
return label
elif type == 'mrt':
label = 'MRT'
if self.services:
if self.services[0].analysis:
label += ' ' + self.services[0].analysis.code
if self.create_date:
label += ' ' + str(datetime.date(self.create_date))
return label
else:
if self.sample:
result = self.get_sample_field((self,), ('label',))
return result['label'][self.id]
return ''
@staticmethod
def default_package_type():
if Transaction().context.get('package_type'):
return Transaction().context.get('package_type')
return None
@fields.depends('sample', '_parent_sample.package_type')
def on_change_with_package_type(self, name=None):
if self.sample:
result = self.get_sample_field((self,), ('package_type',))
return result['package_type'][self.id]
return None
@staticmethod
def default_size():
return Transaction().context.get('size', None)
@fields.depends('sample', '_parent_sample.size')
def on_change_with_size(self, name=None):
if self.sample:
result = self.get_sample_field((self,), ('size',))
return result['size'][self.id]
return None
@staticmethod
def default_size_uom():
if Transaction().context.get('size_uom'):
return Transaction().context.get('size_uom')
return None
@fields.depends('sample', '_parent_sample.size_uom')
def on_change_with_size_uom(self, name=None):
if self.sample:
result = self.get_sample_field((self,), ('size_uom',))
return result['size_uom'][self.id]
return None
@staticmethod
def default_fraction_state():
if Transaction().context.get('fraction_state'):
return Transaction().context.get('fraction_state')
return None
@fields.depends('sample', '_parent_sample.package_state')
def on_change_with_fraction_state(self, name=None):
if self.sample:
result = self.get_sample_field((self,), ('fraction_state',))
return result['fraction_state'][self.id]
return None
@classmethod
def get_sample_field(cls, fractions, names):
result = {}
for name in names:
result[name] = {}
if name in ('label', 'size'):
for f in fractions:
result[name][f.id] = getattr(f.sample, name, None)
elif name == 'fraction_state':
for f in fractions:
field = getattr(f.sample, 'package_state', None)
result[name][f.id] = field.id if field else None
else:
for f in fractions:
field = getattr(f.sample, name, None)
result[name][f.id] = field.id if field else None
return result
@classmethod
def search_sample_field(cls, name, clause):
return [('sample.' + name,) + tuple(clause[1:])]
@classmethod
def get_entry_state(cls, fractions, name):
result = {}
for f in fractions:
result[f.id] = getattr(f.entry, 'state', None)
return result
@classmethod
def search_entry_state(cls, name, clause):
return [('sample.entry.state',) + tuple(clause[1:])]
@fields.depends('confirmed')
def on_change_with_button_manage_services_available(self, name=None):
if self.confirmed:
return True
return False
@fields.depends('confirmed', 'type', '_parent_type.cie_fraction_type')
def on_change_with_cie_fraction_type_available(self, name=None):
if not self.confirmed and self.type and self.type.cie_fraction_type:
return True
return False
@classmethod
@ModelView.button_action('lims.wiz_lims_manage_services')
def manage_services(cls, fractions):
pass
@classmethod
@ModelView.button_action('lims.wiz_lims_complete_services')
def complete_services(cls, fractions):
pass
@classmethod
@ModelView.button_action('lims.wiz_lims_load_services')
def load_services(cls, fractions):
pass
@fields.depends('confirmed', 'sample', '_parent_sample.entry')
def on_change_with_button_confirm_available(self, name=None):
if (not self.confirmed and self.sample and self.sample.entry and
(self.sample.entry.state == 'ongoing')):
return True
return False
@classmethod
def check_divided_report(cls, fractions):
pool = Pool()
Service = pool.get('lims.service')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
services = Service.search([
('fraction', 'in', [f.id for f in fractions]),
('divide', '=', True),
])
for service in services:
if (EntryDetailAnalysis.search_count([
('service', '=', service.id),
('report_grouper', '!=', 0),
]) == 0):
raise UserError(gettext('lims.msg_not_divided'))
@classmethod
@ModelView.button
def confirm(cls, fractions):
pool = Pool()
Config = pool.get('lims.configuration')
Service = pool.get('lims.service')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
Move = pool.get('stock.move')
confirm_background = Config(1).entry_confirm_background
cls.check_divided_report(fractions)
fractions_to_save = []
stock_moves_to_create = []
for fraction in fractions:
services = Service.search([('fraction', '=', fraction.id)])
Service.copy_analysis_comments(services)
Service.set_confirmation_date(services)
fraction.create_laboratory_notebook()
analysis_detail = EntryDetailAnalysis.search([
('fraction', '=', fraction.id)])
if analysis_detail:
EntryDetailAnalysis.create_notebook_lines(analysis_detail,
fraction)
fraction.confirmed = True
if confirm_background:
fraction.waiting_confirmation = True
else:
stock_moves_to_create.append(fraction.create_stock_move())
fractions_to_save.append(fraction)
if stock_moves_to_create:
with Transaction().set_context(check_current_location=False):
Move.save(stock_moves_to_create)
Move.assign(stock_moves_to_create)
Move.do(stock_moves_to_create)
cls.save(fractions_to_save)
with Transaction().set_context(_check_access=False):
fracts = cls.search([
('id', 'in', [f.id for f in fractions]),
])
for fraction in fracts:
fraction.update_detail_analysis()
if fraction.cie_fraction_type:
fraction.create_blind_samples()
def create_laboratory_notebook(self):
pool = Pool()
Notebook = pool.get('lims.notebook')
with Transaction().set_user(0):
notebook = Notebook(
fraction=self.id,
)
notebook.save()
def create_stock_move(self):
return self._get_stock_move()
def _get_stock_move(self):
pool = Pool()
Config = pool.get('lims.configuration')
Date = pool.get('ir.date')
User = pool.get('res.user')
Location = pool.get('stock.location')
Move = pool.get('stock.move')
config_ = Config(1)
if config_.fraction_product:
product = config_.fraction_product
else:
raise UserError(gettext('lims.msg_missing_fraction_product'))
today = Date.today()
company = User(Transaction().user).company
if self.sample.entry.party.customer_location:
from_location = self.sample.entry.party.customer_location
else:
locations = Location.search([('type', '=', 'customer')])
from_location = locations[0] if len(locations) == 1 else None
with Transaction().set_user(0, set_context=True):
move = Move()
move.product = product.id
move.fraction = self.id
move.quantity = self.packages_quantity
move.uom = product.default_uom
move.from_location = from_location
move.to_location = self.storage_location
move.company = company
move.planned_date = today
move.origin = self
move.state = 'draft'
return move
@classmethod
def confirm_waiting_fractions(cls):
'''
Cron - Confirm Waiting Fractions
'''
Move = Pool().get('stock.move')
logger = logging.getLogger('lims')
fractions = cls.search([
('waiting_confirmation', '=', True),
], order=[('id', 'ASC')])
if fractions:
logger.info('Cron - Confirming fractions:INIT')
fractions_to_save = []
stock_moves_to_create = []
for fraction in fractions:
fraction.waiting_confirmation = False
stock_moves_to_create.append(fraction.create_stock_move())
fractions_to_save.append(fraction)
if stock_moves_to_create:
with Transaction().set_context(check_current_location=False):
Move.save(stock_moves_to_create)
Move.assign(stock_moves_to_create)
Move.do(stock_moves_to_create)
cls.save(fractions_to_save)
logger.info('Cron - Confirming fractions:END')
@fields.depends('services')
def on_change_services(self, name=None):
Analysis = Pool().get('lims.analysis')
self.duplicated_analysis_message = ''
if self.services:
analysis_ids = []
for service in self.services:
if service.analysis:
new_analysis_ids = [service.analysis.id]
new_analysis_ids.extend(Analysis.get_included_analysis(
service.analysis.id))
for a_id in new_analysis_ids:
if a_id in analysis_ids:
analysis = Analysis(a_id)
self.duplicated_analysis_message = (
gettext(
'lims.msg_duplicated_analysis_fraction',
analysis=analysis.rec_name))
return
analysis_ids.extend(new_analysis_ids)
def get_create_date2(self, name):
return self.create_date.replace(microsecond=0)
@classmethod
def search_create_date2(cls, name, clause):
cursor = Transaction().connection.cursor()
operator_ = clause[1:2][0]
cursor.execute('SELECT id '
'FROM "' + cls._table + '" '
'WHERE create_date' + operator_ + ' %s',
clause[2:3])
return [('id', 'in', [x[0] for x in cursor.fetchall()])]
@fields.depends('countersample_date', 'storage_time')
def on_change_with_expiry_date(self, name=None):
if self.countersample_date:
return self.countersample_date + relativedelta(
months=self.storage_time)
return None
@classmethod
def get_current_location(cls, fractions, name=None):
cursor = Transaction().connection.cursor()
Move = Pool().get('stock.move')
result = {}
for f in fractions:
cursor.execute('SELECT to_location '
'FROM "' + Move._table + '" '
'WHERE fraction = %s '
'AND state IN (\'assigned\', \'done\') '
'ORDER BY effective_date DESC, id DESC '
'LIMIT 1', (f.id,))
location = cursor.fetchone()
result[f.id] = location[0] if location else None
return result
@classmethod
def search_current_location(cls, name, domain=None):
if not Transaction().context.get('check_current_location', True):
return []
cursor = Transaction().connection.cursor()
pool = Pool()
Fraction = pool.get('lims.fraction')
Move = pool.get('stock.move')
Location = pool.get('stock.location')
def _search_current_location_eval_domain(line, domain):
operator_funcs = {
'=': operator.eq,
'>=': operator.ge,
'>': operator.gt,
'<=': operator.le,
'<': operator.lt,
'!=': operator.ne,
'in': lambda v, l: v in l,
'not in': lambda v, l: v not in l,
'ilike': lambda v, l: False,
}
field, op, operand = domain
value = line.get(field)
return operator_funcs[op](value, operand)
if domain and domain[1] == 'ilike':
locations = Location.search([
('code', '=', domain[2]),
], order=[])
if not locations:
locations = Location.search([
('name',) + tuple(domain[1:]),
], order=[])
if not locations:
return []
domain = ('current_location', 'in', [l.id for l in locations])
cursor.execute('SELECT f.id, last_move.to_location '
'FROM "' + Fraction._table + '" f '
'INNER JOIN ( '
'SELECT DISTINCT ON (fraction) fraction, to_location '
'FROM "' + Move._table + '" '
'WHERE state IN (\'assigned\', \'done\') '
'ORDER BY fraction, effective_date DESC, id DESC '
') last_move '
'ON f.id = last_move.fraction')
processed_lines = [{
'fraction': x[0],
'current_location': x[1],
} for x in cursor.fetchall()]
record_ids = [line['fraction'] for line in processed_lines
if _search_current_location_eval_domain(line, domain)]
return [('id', 'in', record_ids)]
@classmethod
def order_create_date2(cls, tables):
return cls.create_date.convert_order('create_date', tables, cls)
def _order_sample_field(name):
def order_field(tables):
Sample = Pool().get('lims.sample')
field = Sample._fields[name]
table, _ = tables[None]
sample_tables = tables.get('sample')
if sample_tables is None:
sample = Sample.__table__()
sample_tables = {
None: (sample, sample.id == table.sample),
}
tables['sample'] = sample_tables
return field.convert_order(name, sample_tables, Sample)
return staticmethod(order_field)
# Redefine convert_order function with 'order_%s' % field
order_entry = _order_sample_field('entry')
order_party = _order_sample_field('party')
order_label = _order_sample_field('label')
order_product_type = _order_sample_field('product_type')
order_matrix = _order_sample_field('matrix')
@classmethod
def get_has_results_report(cls, fractions, names):
cursor = Transaction().connection.cursor()
pool = Pool()
Service = pool.get('lims.service')
NotebookLine = pool.get('lims.notebook.line')
result = {}
for name in names:
result[name] = {}
for f in fractions:
cursor.execute('SELECT s.fraction '
'FROM "' + Service._table + '" s '
'INNER JOIN "' + NotebookLine._table + '" nl '
'ON s.id = nl.service '
'WHERE s.fraction = %s '
'AND nl.results_report IS NOT NULL',
(f.id,))
value = False
if cursor.fetchone():
value = True
result[name][f.id] = value
return result
@classmethod
def search_has_results_report(cls, name, clause):
cursor = Transaction().connection.cursor()
pool = Pool()
Service = pool.get('lims.service')
NotebookLine = pool.get('lims.notebook.line')
cursor.execute('SELECT DISTINCT(s.fraction) '
'FROM "' + Service._table + '" s '
'INNER JOIN "' + NotebookLine._table + '" nl '
'ON s.id = nl.service '
'WHERE nl.results_report IS NOT NULL')
has_results_report = [x[0] for x in cursor.fetchall()]
field, op, operand = clause
if (op, operand) in (('=', True), ('!=', False)):
return [('id', 'in', has_results_report)]
elif (op, operand) in (('=', False), ('!=', True)):
return [('id', 'not in', has_results_report)]
else:
return []
def get_has_all_results_reported(self, name=None):
NotebookLine = Pool().get('lims.notebook.line')
notebook_lines = NotebookLine.search([
('analysis_detail.service.fraction', '=', self.id),
('report', '=', True),
('annulled', '=', False),
])
if not notebook_lines:
return False
for nl in notebook_lines:
if not nl.accepted:
return False
if not nl.results_report:
return False
return True
def get_formated_number(self, format):
formated_number = self.number
number_parts = self.number.split('/')
number_parts2 = number_parts[1].split('-')
if len(number_parts2) < 2: # 2014: "0000097-1/2014"
number_parts2 = number_parts[0].split('-')
sample_number = number_parts2[0]
sample_year = number_parts[1]
fraction_number = number_parts2[1]
else: # 2015: "2015/0000017-1"
sample_number = number_parts2[0]
sample_year = number_parts[0]
fraction_number = number_parts2[1]
if format == 'sn-sy-fn':
formated_number = (sample_number + '-' + sample_year + '-' +
fraction_number)
elif format == 'sy-sn-fn':
formated_number = (sample_year + '-' + sample_number + '-' +
fraction_number)
elif format == 'pt-m-sn-sy-fn':
formated_number = (self.product_type.code + '-' +
self.matrix.code + '-' + sample_number + '-' +
sample_year + '-' + fraction_number)
elif format == 'pt-m-sy-sn-fn':
formated_number = (self.product_type.code + '-' +
self.matrix.code + '-' + sample_year + '-' +
sample_number + '-' + fraction_number)
return formated_number
def get_icon(self, name):
if self.has_results_report:
return 'lims-green'
if not self.confirmed:
return 'lims-red'
return 'lims-white'
def update_detail_analysis(self):
EntryDetailAnalysis = Pool().get('lims.entry.detail.analysis')
analysis_details = EntryDetailAnalysis.search([
('fraction', '=', self.id),
])
if analysis_details:
EntryDetailAnalysis.write(analysis_details, {
'state': 'unplanned',
})
def create_blind_samples(self):
pool = Pool()
NotebookLine = pool.get('lims.notebook.line')
BlindSample = pool.get('lims.blind_sample')
Date = pool.get('ir.date')
confirmation_date = Date.today()
to_create = []
nlines = NotebookLine.search([
('notebook.fraction', '=', self.id),
])
for nline in nlines:
detail = nline.analysis_detail
record = {
'line': nline.id,
'entry': nline.fraction.entry.id,
'sample': nline.fraction.sample.id,
'fraction': nline.fraction.id,
'service': nline.service.id,
'analysis': nline.analysis.id,
'repetition': nline.repetition,
'date': confirmation_date,
'min_value': detail.cie_min_value,
'max_value': detail.cie_max_value,
}
original_fraction = self.cie_original_fraction
if original_fraction:
record['original_sample'] = original_fraction.sample.id
record['original_fraction'] = original_fraction.id
original_line = NotebookLine.search([
('notebook.fraction', '=', original_fraction.id),
('analysis', '=', nline.analysis.id),
('repetition', '=', nline.repetition),
])
if original_line:
record['original_line'] = original_line[0].id
record['original_repetition'] = original_line[0].repetition
to_create.append(record)
if to_create:
BlindSample.create(to_create)
@staticmethod
def get_stored_fractions():
cursor = Transaction().connection.cursor()
pool = Pool()
Move = pool.get('stock.move')
Location = pool.get('stock.location')
cursor.execute('SELECT DISTINCT ON (m.fraction) m.fraction, l.type '
'FROM "' + Move._table + '" m '
'INNER JOIN "' + Location._table + '" l '
'ON m.to_location = l.id '
'WHERE m.fraction IS NOT NULL '
'AND m.state IN (\'assigned\', \'done\') '
'ORDER BY m.fraction ASC, m.effective_date DESC, m.id DESC')
return [x[0] for x in cursor.fetchall() if x[1] == 'storage']
class Sample(ModelSQL, ModelView):
'Sample'
__name__ = 'lims.sample'
_rec_name = 'number'
number = fields.Char('Number', select=True, readonly=True)
create_date2 = fields.Function(fields.DateTime('Create Date'),
'get_create_date2', searcher='search_create_date2')
date = fields.DateTime('Date', required=True)
date2 = fields.Function(fields.Date('Date'), 'get_date',
searcher='search_date')
entry = fields.Many2One('lims.entry', 'Entry', required=True,
ondelete='CASCADE', select=True, depends=['number'],
states={'readonly': Bool(Eval('number'))})
entry_view = fields.Function(fields.Many2One('lims.entry', 'Entry',
states={'invisible': Not(Bool(Eval('_parent_entry')))}),
'on_change_with_entry_view')
party = fields.Function(fields.Many2One('party.party', 'Party'),
'get_entry_field',
searcher='search_entry_field')
producer = fields.Many2One('lims.sample.producer', 'Producer company',
domain=[('party', '=', Eval('party'))], depends=['party'])
label = fields.Char('Label', translate=True)
sample_client_description = fields.Char('Product described by the client',
translate=True)
product_type = fields.Many2One('lims.product.type', 'Product type',
states={'readonly': Bool(Eval('product_type_matrix_readonly'))},
required=True, domain=[
('id', 'in', Eval('product_type_domain')),
], depends=['product_type_domain', 'product_type_matrix_readonly'])
product_type_view = fields.Function(fields.Many2One('lims.product.type',
'Product type'), 'get_views_field', searcher='search_views_field')
product_type_domain = fields.Function(fields.Many2Many(
'lims.product.type', None, None, 'Product type domain'),
'on_change_with_product_type_domain')
matrix = fields.Many2One('lims.matrix', 'Matrix', required=True,
states={'readonly': Bool(Eval('product_type_matrix_readonly'))},
domain=[
('id', 'in', Eval('matrix_domain')),
], depends=['matrix_domain', 'product_type_matrix_readonly'])
matrix_view = fields.Function(fields.Many2One('lims.matrix',
'Matrix'), 'get_views_field', searcher='search_views_field')
matrix_domain = fields.Function(fields.Many2Many('lims.matrix',
None, None, 'Matrix domain'),
'on_change_with_matrix_domain')
product_type_matrix_readonly = fields.Function(fields.Boolean(
'Product type and Matrix readonly'),
'get_product_type_matrix_readonly')
obj_description = fields.Many2One('lims.objective_description',
'Objective description', depends=['product_type', 'matrix'],
domain=[
('product_type', '=', Eval('product_type')),
('matrix', '=', Eval('matrix')),
])
obj_description_manual = fields.Char('Manual Objective description',
translate=True, states={'readonly': Bool(Eval('obj_description'))},
depends=['obj_description'])
package_state = fields.Many2One('lims.packaging.integrity',
'Package state')
package_type = fields.Many2One('lims.packaging.type', 'Package type')
packages_quantity = fields.Integer('Packages quantity', required=True)
size = fields.Float('Size')
size_uom = fields.Many2One('product.uom', 'Size UoM',
domain=[('category.lims_only_available', '=', True)])
restricted_entry = fields.Boolean('Restricted entry',
states={'readonly': True})
zone = fields.Many2One('lims.zone', 'Zone', required=True)
trace_report = fields.Boolean('Trace report')
fractions = fields.One2Many('lims.fraction', 'sample', 'Fractions',
context={
'analysis_domain': Eval('analysis_domain'),
'typification_domain': Eval('typification_domain'),
'product_type': Eval('product_type'), 'matrix': Eval('matrix'),
'sample': Eval('id'), 'entry': Eval('entry'),
'party': Eval('party'), 'label': Eval('label'),
'package_type': Eval('package_type'), 'size': Eval('size'),
'size_uom': Eval('size_uom'),
'fraction_state': Eval('package_state'),
},
depends=['analysis_domain', 'typification_domain', 'entry',
'party', 'label'])
report_comments = fields.Text('Report comments', translate=True)
comments = fields.Text('Comments')
variety = fields.Many2One('lims.variety', 'Variety',
domain=[('varieties.matrix', '=', Eval('matrix'))],
depends=['matrix'])
analysis_domain = fields.Function(fields.Many2Many('lims.analysis',
None, None, 'Analysis domain'), 'on_change_with_analysis_domain')
typification_domain = fields.Function(fields.Many2Many(
'lims.typification', None, None, 'Typification domain'),
'on_change_with_typification_domain')
confirmed = fields.Function(fields.Boolean('Confirmed'), 'get_confirmed')
has_results_report = fields.Function(fields.Boolean('Results Report'),
'get_has_results_report')
icon = fields.Function(fields.Char("Icon"), 'get_icon')
urgent = fields.Function(fields.Boolean('Urgent'), 'get_urgent',
searcher='search_urgent')
completion_percentage = fields.Function(fields.Float('Complete',
digits=(1, 4), domain=[
('completion_percentage', '>=', 0),
('completion_percentage', '<=', 1),
]),
'get_completion_percentage')
@classmethod
def __setup__(cls):
super(Sample, cls).__setup__()
cls._order.insert(0, ('number', 'DESC'))
@staticmethod
def default_date():
return datetime.now()
@staticmethod
def default_restricted_entry():
return False
@staticmethod
def default_trace_report():
return False
@classmethod
def copy(cls, samples, default=None):
if default is None:
default = {}
new_samples = []
for sample in sorted(samples, key=lambda x: x.number):
new_sample, = super(Sample, cls).copy([sample],
default=default)
new_samples.append(new_sample)
return new_samples
def get_date(self, name):
pool = Pool()
Company = pool.get('company.company')
date = self.date
if not date:
return None
company_id = Transaction().context.get('company')
if company_id:
date = Company(company_id).convert_timezone_datetime(date)
return date.date()
def get_create_date2(self, name):
return self.create_date.replace(microsecond=0)
@classmethod
def search_date(cls, name, clause):
pool = Pool()
Company = pool.get('company.company')
cursor = Transaction().connection.cursor()
timezone = None
company_id = Transaction().context.get('company')
if company_id:
timezone = Company(company_id).timezone
timezone_datetime = 'date::timestamp AT TIME ZONE \'UTC\''
if timezone:
timezone_datetime += ' AT TIME ZONE \'' + timezone + '\''
operator_ = clause[1:2][0]
cursor.execute('SELECT id '
'FROM "' + cls._table + '" '
'WHERE (' + timezone_datetime + ')::date ' +
operator_ + ' %s::date', clause[2:3])
return [('id', 'in', [x[0] for x in cursor.fetchall()])]
@classmethod
def search_create_date2(cls, name, clause):
cursor = Transaction().connection.cursor()
operator_ = clause[1:2][0]
cursor.execute('SELECT id '
'FROM "' + cls._table + '" '
'WHERE create_date' + operator_ + ' %s',
clause[2:3])
return [('id', 'in', [x[0] for x in cursor.fetchall()])]
@classmethod
def create(cls, vlist):
pool = Pool()
LabWorkYear = pool.get('lims.lab.workyear')
Sequence = pool.get('ir.sequence')
workyear_id = LabWorkYear.find()
workyear = LabWorkYear(workyear_id)
sequence = workyear.get_sequence('sample')
if not sequence:
raise UserError(gettext('lims.msg_no_sample_sequence',
work_year=workyear.rec_name))
vlist = [x.copy() for x in vlist]
for values in vlist:
values['number'] = Sequence.get_id(sequence.id)
samples = super(Sample, cls).create(vlist)
for sample in samples:
sample.warn_duplicated_label()
return samples
def warn_duplicated_label(self):
return # deactivated
Warning = Pool().get('res.user.warning')
if self.label:
duplicated = self.search([
('entry', '=', self.entry.id),
('label', '=', self.label),
('id', '!=', self.id),
])
if duplicated:
key = 'lims_sample_label@%s' % self.number
if Warning.check(key):
raise UserWarning(gettext(
'lims.duplicated_label', label=self.label))
@classmethod
def write(cls, *args):
super(Sample, cls).write(*args)
actions = iter(args)
for samples, vals in zip(actions, actions):
if vals.get('label'):
for sample in samples:
sample.warn_duplicated_label()
@fields.depends('product_type', 'matrix', 'zone',
'_parent_product_type.restricted_entry',
'_parent_matrix.restricted_entry', '_parent_zone.restricted_entry')
def on_change_with_restricted_entry(self, name=None):
return (self.product_type and self.product_type.restricted_entry and
self.matrix and self.matrix.restricted_entry and
self.zone and self.zone.restricted_entry)
@fields.depends('product_type', 'matrix')
def on_change_with_analysis_domain(self, name=None):
cursor = Transaction().connection.cursor()
pool = Pool()
Typification = pool.get('lims.typification')
CalculatedTypification = pool.get('lims.typification.calculated')
Analysis = pool.get('lims.analysis')
if not self.product_type or not self.matrix:
return []
cursor.execute('SELECT DISTINCT(analysis) '
'FROM "' + Typification._table + '" '
'WHERE product_type = %s '
'AND matrix = %s '
'AND valid',
(self.product_type.id, self.matrix.id))
typified_analysis = [a[0] for a in cursor.fetchall()]
if not typified_analysis:
return []
cursor.execute('SELECT id '
'FROM "' + Analysis._table + '" '
'WHERE type = \'analysis\' '
'AND behavior IN (\'normal\', \'internal_relation\') '
'AND disable_as_individual IS TRUE '
'AND state = \'active\'')
disabled_analysis = [a[0] for a in cursor.fetchall()]
if disabled_analysis:
typified_analysis = list(set(typified_analysis) -
set(disabled_analysis))
cursor.execute('SELECT DISTINCT(analysis) '
'FROM "' + CalculatedTypification._table + '" '
'WHERE product_type = %s '
'AND matrix = %s',
(self.product_type.id, self.matrix.id))
typified_sets_groups = [a[0] for a in cursor.fetchall()]
cursor.execute('SELECT id '
'FROM "' + Analysis._table + '" '
'WHERE behavior = \'additional\' '
'AND state = \'active\'')
additional_analysis = [a[0] for a in cursor.fetchall()]
return typified_analysis + typified_sets_groups + additional_analysis
@fields.depends('product_type', 'matrix')
def on_change_with_typification_domain(self, name=None):
cursor = Transaction().connection.cursor()
Typification = Pool().get('lims.typification')
if not self.product_type or not self.matrix:
return []
cursor.execute('SELECT id '
'FROM "' + Typification._table + '" '
'WHERE product_type = %s '
'AND matrix = %s '
'AND valid',
(self.product_type.id, self.matrix.id))
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
@staticmethod
def default_product_type_domain():
cursor = Transaction().connection.cursor()
Typification = Pool().get('lims.typification')
cursor.execute('SELECT DISTINCT(product_type) '
'FROM "' + Typification._table + '" '
'WHERE valid')
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
def on_change_with_product_type_domain(self, name=None):
return self.default_product_type_domain()
@fields.depends('product_type')
def on_change_product_type(self):
matrix = None
if self.product_type:
matrixs = self.on_change_with_matrix_domain()
if len(matrixs) == 1:
matrix = matrixs[0]
self.matrix = matrix
@fields.depends('product_type')
def on_change_with_matrix_domain(self, name=None):
cursor = Transaction().connection.cursor()
Typification = Pool().get('lims.typification')
if not self.product_type:
return []
cursor.execute('SELECT DISTINCT(matrix) '
'FROM "' + Typification._table + '" '
'WHERE product_type = %s '
'AND valid',
(self.product_type.id,))
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
def get_product_type_matrix_readonly(self, name=None):
pool = Pool()
Service = pool.get('lims.service')
if Service.search_count([('sample', '=', self.id)]) != 0:
return True
return False
@fields.depends('product_type', 'matrix')
def on_change_with_obj_description(self):
cursor = Transaction().connection.cursor()
ObjectiveDescription = Pool().get('lims.objective_description')
if not self.product_type or not self.matrix:
return None
cursor.execute('SELECT id '
'FROM "' + ObjectiveDescription._table + '" '
'WHERE product_type = %s '
'AND matrix = %s',
(self.product_type.id, self.matrix.id))
res = cursor.fetchone()
return res and res[0] or None
@classmethod
def check_delete(cls, samples):
for sample in samples:
if sample.entry and sample.entry.state != 'draft':
raise UserError(
gettext('lims.msg_delete_sample', sample=sample.rec_name))
@classmethod
def delete(cls, samples):
cls.check_delete(samples)
super(Sample, cls).delete(samples)
@staticmethod
def default_entry_view():
if (Transaction().context.get('entry', 0) > 0):
return Transaction().context.get('entry')
return None
@fields.depends('entry', '_parent_entry.id')
def on_change_with_entry_view(self, name=None):
if self.entry:
return self.entry.id
return None
@staticmethod
def default_party():
if (Transaction().context.get('party', 0) > 0):
return Transaction().context.get('party')
return None
@staticmethod
def default_zone():
Party = Pool().get('party.party')
if (Transaction().context.get('party', 0) > 0):
party = Party(Transaction().context.get('party'))
if party.entry_zone:
return party.entry_zone.id
@fields.depends('entry', '_parent_entry.party')
def on_change_with_party(self, name=None):
if self.entry:
result = self.get_entry_field((self,), ('party',))
return result['party'][self.id]
return None
@classmethod
def get_views_field(cls, samples, names):
result = {}
for name in names:
field_name = name[:-5]
result[name] = {}
for s in samples:
field = getattr(s, field_name, None)
result[name][s.id] = field.id if field else None
return result
@classmethod
def search_views_field(cls, name, clause):
return [(name[:-5],) + tuple(clause[1:])]
@classmethod
def get_entry_field(cls, samples, names):
result = {}
for name in names:
result[name] = {}
for s in samples:
field = getattr(s.entry, name, None)
result[name][s.id] = field.id if field else None
return result
@classmethod
def search_entry_field(cls, name, clause):
return [('entry.' + name,) + tuple(clause[1:])]
@staticmethod
def order_product_type_view(tables):
ProductType = Pool().get('lims.product.type')
field = ProductType._fields['id']
table, _ = tables[None]
product_type_tables = tables.get('product_type')
if product_type_tables is None:
product_type = ProductType.__table__()
product_type_tables = {
None: (product_type, product_type.id == table.product_type),
}
tables['product_type'] = product_type_tables
return field.convert_order('id', product_type_tables, ProductType)
@staticmethod
def order_matrix_view(tables):
Matrix = Pool().get('lims.matrix')
field = Matrix._fields['id']
table, _ = tables[None]
matrix_tables = tables.get('matrix')
if matrix_tables is None:
matrix = Matrix.__table__()
matrix_tables = {
None: (matrix, matrix.id == table.matrix),
}
tables['matrix'] = matrix_tables
return field.convert_order('id', matrix_tables, Matrix)
def get_confirmed(self, name=None):
if not self.fractions:
return False
for fraction in self.fractions:
if not fraction.confirmed:
return False
return True
def get_icon(self, name):
if self.has_results_report:
return 'lims-green'
if not self.confirmed:
return 'lims-red'
return 'lims-white'
@classmethod
def order_create_date2(cls, tables):
return cls.create_date.convert_order('create_date', tables, cls)
@staticmethod
def order_party(tables):
Entry = Pool().get('lims.entry')
field = Entry._fields['party']
table, _ = tables[None]
entry_tables = tables.get('entry')
if entry_tables is None:
entry = Entry.__table__()
entry_tables = {
None: (entry, entry.id == table.entry),
}
tables['entry'] = entry_tables
return field.convert_order('party', entry_tables, Entry)
@classmethod
def get_has_results_report(cls, samples, names):
cursor = Transaction().connection.cursor()
pool = Pool()
Fraction = pool.get('lims.fraction')
Service = pool.get('lims.service')
NotebookLine = pool.get('lims.notebook.line')
result = {}
for name in names:
result[name] = {}
for s in samples:
cursor.execute('SELECT f.sample '
'FROM "' + Fraction._table + '" f '
'INNER JOIN "' + Service._table + '" s '
'ON f.id = s.fraction '
'INNER JOIN "' + NotebookLine._table + '" nl '
'ON s.id = nl.service '
'WHERE f.sample = %s '
'AND nl.results_report IS NOT NULL',
(s.id,))
value = False
if cursor.fetchone():
value = True
result[name][s.id] = value
return result
@classmethod
def get_urgent(cls, samples, name):
pool = Pool()
Service = pool.get('lims.service')
result = {}
for s in samples:
services = Service.search_count([
('sample', '=', s.id),
('urgent', '=', True),
])
if services > 0:
result[s.id] = True
else:
result[s.id] = False
return result
@classmethod
def search_urgent(cls, name, clause):
field, op, operand = clause
if (op, operand) in (('=', True), ('!=', False)):
return [('fractions.services.urgent', '=', True)]
elif (op, operand) in (('=', False), ('!=', True)):
urgents = cls.search([('fractions.services.urgent', '=', True)])
return [('id', 'not in', [u.id for u in urgents])]
return []
def get_completion_percentage(self, name=None):
cursor = Transaction().connection.cursor()
pool = Pool()
NotebookLine = pool.get('lims.notebook.line')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
Notebook = pool.get('lims.notebook')
Fraction = pool.get('lims.fraction')
FractionType = pool.get('lims.fraction.type')
cursor.execute('SELECT nl.notebook, nl.analysis, nl.accepted '
'FROM "' + NotebookLine._table + '" nl '
'INNER JOIN "' + EntryDetailAnalysis._table + '" d '
'ON d.id = nl.analysis_detail '
'INNER JOIN "' + Notebook._table + '" n '
'ON n.id = nl.notebook '
'INNER JOIN "' + Fraction._table + '" f '
'ON f.id = n.fraction '
'INNER JOIN "' + FractionType._table + '" ft '
'ON ft.id = f.type '
'WHERE ft.report = TRUE '
'AND f.sample = %s '
'AND nl.report = TRUE '
'AND nl.annulled = FALSE',
(self.id,))
notebook_lines = cursor.fetchall()
total = len(notebook_lines)
if not total:
return 0
oks, to_check = [], []
for line in notebook_lines:
key = (line[0], line[1])
if line[2]:
oks.append(key)
else:
to_check.append(key)
accepted = len(oks)
if not accepted:
return 0
for key in to_check:
if key in oks:
total -= 1
return round(accepted / total, 4)
class DuplicateSampleStart(ModelView):
'Copy Sample'
__name__ = 'lims.sample.duplicate.start'
sample = fields.Many2One('lims.sample', 'Sample', readonly=True)
date = fields.DateTime('Date', required=True)
labels = fields.Text('Labels')
class DuplicateSample(Wizard):
'Copy Sample'
__name__ = 'lims.sample.duplicate'
start = StateView('lims.sample.duplicate.start',
'lims.lims_duplicate_sample_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Copy', 'duplicate', 'tryton-ok', default=True),
])
duplicate = StateTransition()
def default_start(self, fields):
Sample = Pool().get('lims.sample')
sample = Sample(Transaction().context['active_id'])
return {
'sample': sample.id,
'date': sample.date,
}
def transition_duplicate(self):
Sample = Pool().get('lims.sample')
sample = self.start.sample
date = self.start.date
labels_list = self._get_labels_list(self.start.labels)
for label in labels_list:
Sample.copy([sample], default={
'label': label,
'date': date,
})
return 'end'
def _get_labels_list(self, labels=None):
if not labels:
return [None]
return labels.split('\n')
class DuplicateSampleFromEntryStart(ModelView):
'Copy Sample'
__name__ = 'lims.entry.duplicate_sample.start'
entry = fields.Many2One('lims.entry', 'Entry')
sample = fields.Many2One('lims.sample', 'Sample', required=True,
domain=[('entry', '=', Eval('entry'))], depends=['entry'])
date = fields.DateTime('Date', required=True)
labels = fields.Text('Labels')
@fields.depends('sample', '_parent_sample.date')
def on_change_with_date(self, name=None):
if self.sample:
return self.sample.date
return False
class DuplicateSampleFromEntry(Wizard):
'Copy Sample'
__name__ = 'lims.entry.duplicate_sample'
start = StateView('lims.entry.duplicate_sample.start',
'lims.lims_duplicate_sample_from_entry_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Copy', 'duplicate', 'tryton-ok', default=True),
])
duplicate = StateTransition()
def default_start(self, fields):
return {
'entry': Transaction().context['active_id'],
}
def transition_duplicate(self):
Sample = Pool().get('lims.sample')
sample = self.start.sample
date = self.start.date
labels_list = self._get_labels_list(self.start.labels)
for label in labels_list:
Sample.copy([sample], default={
'label': label,
'date': date,
})
return 'end'
def _get_labels_list(self, labels=None):
if not labels:
return [None]
return labels.split('\n')
class ManageServices(Wizard):
'Manage Services'
__name__ = 'lims.manage_services'
start_state = 'check'
check = StateTransition()
start = StateView('lims.fraction',
'lims.lims_manage_services_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Ok', 'ok', 'tryton-ok', default=True),
])
ok = StateTransition()
def default_start(self, fields):
Fraction = Pool().get('lims.fraction')
fraction = Fraction(Transaction().context['active_id'])
if not fraction:
return {}
not_planned_services_ids = [s.id for s in fraction.services if
s.manage_service_available]
analysis_domain_ids = fraction.on_change_with_analysis_domain()
typification_domain_ids = fraction.on_change_with_typification_domain()
default = {
'id': fraction.id,
'sample': fraction.sample.id,
'entry': fraction.entry.id,
'party': fraction.party.id,
'services': not_planned_services_ids,
'analysis_domain': analysis_domain_ids,
'typification_domain': typification_domain_ids,
'product_type': fraction.product_type.id,
'matrix': fraction.matrix.id,
}
return default
def transition_check(self):
Fraction = Pool().get('lims.fraction')
fraction = Fraction(Transaction().context['active_id'])
if fraction.countersample_date is None:
return 'start'
else:
raise UserError(gettext('lims.msg_counter_sample_date'))
return 'end'
def transition_ok(self):
pool = Pool()
Entry = pool.get('lims.entry')
Fraction = pool.get('lims.fraction')
delete_ack_report_cache = False
fraction = Fraction(Transaction().context['active_id'])
original_services = [s for s in fraction.services if
s.manage_service_available]
actual_services = self.start.services
for service in original_services:
if service not in actual_services:
self.delete_service(service)
delete_ack_report_cache = True
for service in actual_services:
if service not in original_services:
self.create_service(service, fraction)
delete_ack_report_cache = True
for original_service in original_services:
for actual_service in actual_services:
if original_service == actual_service:
for field in self._get_comparison_fields():
if (getattr(original_service, field) !=
getattr(actual_service, field)):
self.update_service(original_service,
actual_service, fraction, field)
delete_ack_report_cache = True
break
if delete_ack_report_cache:
entry = Entry(fraction.entry.id)
entry.ack_report_format = None
entry.ack_report_cache = None
entry.save()
original_services = [s for s in fraction.services if not s.planned]
actual_services = self.start.services
for original_service in original_services:
for actual_service in actual_services:
if original_service == actual_service:
update_cie_data = True
for field in ('analysis', 'laboratory', 'method',
'device'):
if (getattr(original_service, field) !=
getattr(actual_service, field)):
update_cie_data = False
break
if update_cie_data:
for detail in actual_service.analysis_detail:
detail.save()
return 'end'
def create_service(self, service, fraction):
pool = Pool()
Service = pool.get('lims.service')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
service_create = [{
'fraction': fraction.id,
'sample': service.sample.id,
'analysis': service.analysis.id,
'urgent': service.urgent,
'priority': service.priority,
'report_date': service.report_date,
'laboratory': (service.laboratory.id if service.laboratory
else None),
'method': service.method.id if service.method else None,
'device': service.device.id if service.device else None,
'comments': service.comments,
'divide': service.divide,
}]
with Transaction().set_context(manage_service=True):
new_service, = Service.create(service_create)
Service.copy_analysis_comments([new_service])
Service.set_confirmation_date([new_service])
analysis_detail = EntryDetailAnalysis.search([
('service', '=', new_service.id)])
if analysis_detail:
EntryDetailAnalysis.create_notebook_lines(analysis_detail,
fraction)
EntryDetailAnalysis.write(analysis_detail, {
'state': 'unplanned',
})
if fraction.cie_fraction_type:
self._create_blind_samples(analysis_detail, fraction)
return new_service
def delete_service(self, service):
Service = Pool().get('lims.service')
with Transaction().set_user(0, set_context=True):
Service.delete([service])
def update_service(self, original_service, actual_service, fraction,
field_changed):
pool = Pool()
Service = pool.get('lims.service')
NotebookLine = pool.get('lims.notebook.line')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
service_write = {}
service_write[field_changed] = getattr(actual_service, field_changed)
Service.write([original_service], service_write)
update_details = True if field_changed in ('analysis', 'laboratory',
'method', 'device') else False
if update_details:
notebook_lines = NotebookLine.search([
('service', '=', original_service.id),
])
if notebook_lines:
NotebookLine.delete(notebook_lines)
analysis_detail = EntryDetailAnalysis.search([
('service', '=', original_service.id)])
if analysis_detail:
EntryDetailAnalysis.create_notebook_lines(analysis_detail,
fraction)
EntryDetailAnalysis.write(analysis_detail, {
'state': 'unplanned',
'confirmation_date': original_service.confirmation_date,
})
if fraction.cie_fraction_type:
self._create_blind_samples(analysis_detail, fraction)
def _create_blind_samples(self, analysis_detail, fraction):
pool = Pool()
NotebookLine = pool.get('lims.notebook.line')
BlindSample = pool.get('lims.blind_sample')
Date = pool.get('ir.date')
confirmation_date = Date.today()
to_create = []
for detail in analysis_detail:
nlines = NotebookLine.search([
('analysis_detail', '=', detail.id),
])
for nline in nlines:
record = {
'line': nline.id,
'entry': nline.fraction.entry.id,
'sample': nline.fraction.sample.id,
'fraction': nline.fraction.id,
'service': nline.service.id,
'analysis': nline.analysis.id,
'repetition': nline.repetition,
'date': confirmation_date,
'min_value': detail.cie_min_value,
'max_value': detail.cie_max_value,
}
original_fraction = fraction.cie_original_fraction
if original_fraction:
record['original_sample'] = original_fraction.sample.id
record['original_fraction'] = original_fraction.id
original_line = NotebookLine.search([
('notebook.fraction', '=', original_fraction.id),
('analysis', '=', nline.analysis.id),
('repetition', '=', nline.repetition),
])
if original_line:
record['original_line'] = original_line[0].id
record['original_repetition'] = (
original_line[0].repetition)
to_create.append(record)
if to_create:
BlindSample.create(to_create)
def _get_comparison_fields(self):
return ('analysis', 'laboratory', 'method', 'device', 'urgent',
'priority', 'report_date', 'comments', 'divide')
class CompleteServices(Wizard):
'Complete Services'
__name__ = 'lims.complete_services'
start = StateTransition()
def transition_start(self):
Fraction = Pool().get('lims.fraction')
fraction = Fraction(Transaction().context['active_id'])
for service in fraction.services:
if service.analysis.behavior != 'additional':
self.complete_analysis_detail(service)
return 'end'
def complete_analysis_detail(self, service):
'Similar to Service.update_analysis_detail(services)'
pool = Pool()
Service = pool.get('lims.service')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
analysis_data = []
if service.analysis.type == 'analysis':
laboratory_id = service.laboratory.id
method_id = service.method.id if service.method else None
device_id = service.device.id if service.device else None
analysis_data.append({
'id': service.analysis.id,
'origin': service.analysis.code,
'laboratory': laboratory_id,
'method': method_id,
'device': device_id,
})
else:
service_context = {
'product_type': service.fraction.product_type.id,
'matrix': service.fraction.matrix.id,
}
analysis_data.extend(Service._get_included_analysis(
service.analysis, service.analysis.code,
service_context))
to_create = []
for analysis in analysis_data:
if EntryDetailAnalysis.search_count([
('service', '=', service.id),
('analysis', '=', analysis['id']),
]) != 0:
continue
values = {}
values['service'] = service.id
values['analysis'] = analysis['id']
values['analysis_origin'] = analysis['origin']
values['laboratory'] = analysis['laboratory']
values['method'] = analysis['method']
values['device'] = analysis['device']
values['confirmation_date'] = service.confirmation_date
values['state'] = 'unplanned'
to_create.append(values)
if to_create:
with Transaction().set_user(0, set_context=True):
analysis_detail = EntryDetailAnalysis.create(to_create)
if analysis_detail:
EntryDetailAnalysis.create_notebook_lines(analysis_detail,
service.fraction)
class EditSampleServiceStart(ModelView):
'Edit Sample Services'
__name__ = 'lims.sample.edit_service.start'
product_type = fields.Many2One('lims.product.type', 'Product type')
matrix = fields.Many2One('lims.matrix', 'Matrix')
analysis_domain = fields.Many2Many('lims.analysis', None, None,
'Analysis domain')
services = fields.One2Many('lims.create_sample.service', None, 'Services',
required=True, depends=['analysis_domain', 'product_type', 'matrix'],
context={
'analysis_domain': Eval('analysis_domain'),
'product_type': Eval('product_type'), 'matrix': Eval('matrix'),
})
class EditSampleService(Wizard):
'Edit Sample Services'
__name__ = 'lims.sample.edit_service'
start = StateView('lims.sample.edit_service.start',
'lims.edit_sample_service_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Confirm', 'confirm', 'tryton-ok', default=True),
])
confirm = StateTransition()
def default_start(self, fields):
Sample = Pool().get('lims.sample')
sample = Sample(Transaction().context['active_id'])
if not sample:
return {}
analysis_domain_ids = sample.on_change_with_analysis_domain()
services = []
for f in sample.fractions:
for s in f.services:
services.append({
'analysis': s.analysis.id,
'laboratory': s.laboratory and s.laboratory.id or None,
'method': s.method and s.method.id or None,
'device': s.device and s.device.id or None,
'urgent': s.urgent,
'priority': s.priority,
'report_date': s.report_date,
'divide': s.divide,
})
default = {
'product_type': sample.product_type.id,
'matrix': sample.matrix.id,
'analysis_domain': analysis_domain_ids,
'services': services,
}
return default
def transition_confirm(self):
Sample = Pool().get('lims.sample')
actual_analysis = [s.analysis.id for s in self.start.services]
for sample in Sample.browse(Transaction().context['active_ids']):
for fraction in sample.fractions:
original_analysis = []
for service in fraction.services:
original_analysis.append(service.analysis.id)
if service.analysis.id not in actual_analysis:
self.delete_service(service)
for service in self.start.services:
if service.analysis.id not in original_analysis:
self.create_service(service, fraction)
return 'end'
def create_service(self, service, fraction):
pool = Pool()
Service = pool.get('lims.service')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
service_create = [{
'fraction': fraction.id,
'sample': fraction.sample.id,
'analysis': service.analysis.id,
'laboratory': (service.laboratory.id if service.laboratory
else None),
'method': service.method.id if service.method else None,
'device': service.device.id if service.device else None,
'urgent': service.urgent,
'priority': service.priority,
'report_date': service.report_date,
'divide': service.divide,
}]
with Transaction().set_context(manage_service=True):
new_service, = Service.create(service_create)
Service.copy_analysis_comments([new_service])
Service.set_confirmation_date([new_service])
analysis_detail = EntryDetailAnalysis.search([
('service', '=', new_service.id)])
if analysis_detail:
EntryDetailAnalysis.create_notebook_lines(analysis_detail,
fraction)
EntryDetailAnalysis.write(analysis_detail, {
'state': 'unplanned',
})
return new_service
def delete_service(self, service):
pool = Pool()
#Service = pool.get('lims.service')
NotebookLine = pool.get('lims.notebook.line')
with Transaction().set_user(0, set_context=True):
#Service.delete([service])
notebook_lines = NotebookLine.search([
('service', '=', service.id),
])
NotebookLine.write(notebook_lines, {
'annulled': True,
'annulment_date': datetime.now(),
})
class FractionsByLocationsStart(ModelView):
'Fractions by Locations'
__name__ = 'lims.fractions_by_locations.start'
location = fields.Many2One('stock.location', 'Location',
required=True)
@classmethod
def default_location(cls):
Location = Pool().get('stock.location')
locations = Location.search([('type', '=', 'warehouse')])
if len(locations) == 1:
return locations[0].id
class FractionsByLocations(Wizard):
'Fractions by Locations'
__name__ = 'lims.fractions_by_locations'
start = StateView('lims.fractions_by_locations.start',
'lims.fractions_by_locations_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Open', 'open', 'tryton-ok', True),
])
open = StateAction('lims.act_lims_fractions_by_locations')
def do_open(self, action):
Location = Pool().get('stock.location')
childs = Location.search([
('parent', 'child_of', [self.start.location.id]),
])
locations = [l.id for l in childs]
action['pyson_domain'] = PYSONEncoder().encode([
('current_location', 'in', locations),
])
action['name'] += ' (%s)' % self.start.location.rec_name
return action, {}
class CountersampleStorageStart(ModelView):
'Countersamples Storage'
__name__ = 'lims.countersample.storage.start'
report_date_from = fields.Date('Report date from', required=True)
report_date_to = fields.Date('to', required=True)
date_from = fields.Date('Date from', required=True)
date_to = fields.Date('to', required=True)
location_origin = fields.Many2One('stock.location', 'Origin Location',
required=True, domain=[('type', '=', 'storage')])
storage_force = fields.Boolean('Storage force')
class CountersampleStorageEmpty(ModelView):
'Countersamples Storage'
__name__ = 'lims.countersample.storage.empty'
class CountersampleStorageResult(ModelView):
'Countersamples Storage'
__name__ = 'lims.countersample.storage.result'
location_destination = fields.Many2One('stock.location',
'Destination Location', required=True,
domain=[('type', '=', 'storage')])
countersample_date = fields.Date('Storage date', required=True)
fractions = fields.Many2Many('lims.fraction', None, None,
'Fractions', required=True,
domain=[('id', 'in', Eval('fraction_domain'))],
depends=['fraction_domain'])
fraction_domain = fields.One2Many('lims.fraction', None,
'Fractions domain')
shipment = fields.Many2One('stock.shipment.internal', 'Internal Shipment')
class CountersampleStorage(Wizard):
'Countersamples Storage'
__name__ = 'lims.countersample.storage'
start = StateView('lims.countersample.storage.start',
'lims.lims_countersample_storage_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search', 'search', 'tryton-forward', default=True),
])
search = StateTransition()
empty = StateView('lims.countersample.storage.empty',
'lims.lims_countersample_storage_empty_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search again', 'start', 'tryton-forward', default=True),
])
result = StateView('lims.countersample.storage.result',
'lims.lims_countersample_storage_result_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Storage', 'storage', 'tryton-ok', default=True),
])
storage = StateTransition()
open = StateAction('stock.act_shipment_internal_form')
def default_start(self, fields):
res = {}
for field in ('report_date_from', 'report_date_to',
'date_from', 'date_to'):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field)
for field in ('location_origin',):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field).id
return res
def transition_search(self):
pool = Pool()
Fraction = pool.get('lims.fraction')
NotebookLine = pool.get('lims.notebook.line')
f_list = []
if self.start.storage_force is True:
fractions = Fraction.search([
('countersample_date', '=', None),
('sample.date2', '>=', self.start.date_from),
('sample.date2', '<=', self.start.date_to),
('current_location', '=', self.start.location_origin.id),
])
if fractions:
for f in fractions:
notebook_lines_ids = (
self._get_fraction_notebook_lines_storage_force(f.id))
if not notebook_lines_ids:
continue
notebook_lines = NotebookLine.search([
('id', 'in', notebook_lines_ids),
])
if not notebook_lines:
continue
f_list.append(f)
else:
fractions = Fraction.search([
('countersample_date', '=', None),
('sample.date2', '>=', self.start.date_from),
('sample.date2', '<=', self.start.date_to),
('has_results_report', '=', True),
('current_location', '=', self.start.location_origin.id),
])
if fractions:
for f in fractions:
notebook_lines_ids = self._get_fraction_notebook_lines(
f.id)
if not notebook_lines_ids:
continue
notebook_lines = NotebookLine.search([
('id', 'in', notebook_lines_ids),
])
if not notebook_lines:
continue
# Check not accepted (with repetitions)
to_check = []
oks = []
for line in notebook_lines:
key = line.analysis.id
if not line.accepted:
to_check.append(key)
else:
oks.append(key)
to_check = list(set(to_check))
oks = list(set(oks))
if to_check:
for key in oks:
if key in to_check:
to_check.remove(key)
if len(to_check) > 0:
continue
all_results_reported = True
for nl in notebook_lines:
if not nl.accepted:
continue
if not nl.results_report:
all_results_reported = False
break
if not self._get_line_reported(nl,
self.start.report_date_from,
self.start.report_date_to):
all_results_reported = False
break
if all_results_reported:
f_list.append(f)
if f_list:
self.result.fractions = f_list
return 'result'
return 'empty'
def _get_fraction_notebook_lines(self, fraction_id):
cursor = Transaction().connection.cursor()
pool = Pool()
NotebookLine = pool.get('lims.notebook.line')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
Service = pool.get('lims.service')
cursor.execute('SELECT nl.id '
'FROM "' + NotebookLine._table + '" nl '
'INNER JOIN "' + EntryDetailAnalysis._table + '" ad '
'ON ad.id = nl.analysis_detail '
'INNER JOIN "' + Service._table + '" srv '
'ON srv.id = nl.service '
'WHERE srv.fraction = %s '
'AND nl.report = TRUE '
'AND nl.annulled = FALSE',
(fraction_id,))
return [x[0] for x in cursor.fetchall()]
def _get_line_reported(self, nl, date_from, date_to):
cursor = Transaction().connection.cursor()
pool = Pool()
ReportVersionDetailLine = pool.get(
'lims.results_report.version.detail.line')
ReportVersionDetail = pool.get('lims.results_report.version.detail')
ReportVersion = pool.get('lims.results_report.version')
cursor.execute('SELECT rvdl.id '
'FROM "' + ReportVersionDetailLine._table + '" rvdl '
'INNER JOIN "' + ReportVersionDetail._table + '" rvd '
'ON rvd.id = rvdl.report_version_detail '
'INNER JOIN "' + ReportVersion._table + '" rv '
'ON rv.id = rvd.report_version '
'WHERE rvdl.notebook_line = %s '
'AND rv.results_report = %s '
'AND DATE(COALESCE(rvd.write_date, rvd.create_date)) '
'BETWEEN %s::date AND %s::date',
(nl.id, nl.results_report.id, date_from, date_to))
return cursor.fetchone()
def default_result(self, fields):
fractions = [f.id for f in self.result.fractions]
self.result.fractions = None
return {
'fractions': [],
'fraction_domain': fractions,
}
def transition_storage(self):
Fraction = Pool().get('lims.fraction')
countersample_location = self.result.location_destination
countersample_date = self.result.countersample_date
fractions_to_save = []
for fraction in self.result.fractions:
fraction.countersample_location = countersample_location
fraction.countersample_date = countersample_date
fraction.expiry_date = countersample_date + relativedelta(
months=fraction.storage_time)
fractions_to_save.append(fraction)
Fraction.save(fractions_to_save)
moves = self._get_stock_moves(self.result.fractions)
shipment = self.create_internal_shipment(moves)
if shipment:
self.result.shipment = shipment
return 'open'
return 'end'
def create_internal_shipment(self, moves):
ShipmentInternal = Pool().get('stock.shipment.internal')
shipment = self._get_internal_shipment()
if not shipment:
return
shipment.moves = moves
with Transaction().set_context(check_current_location=False):
shipment.save()
ShipmentInternal.wait([shipment])
ShipmentInternal.assign_force([shipment])
ShipmentInternal.done([shipment])
return shipment
def _get_internal_shipment(self):
pool = Pool()
User = pool.get('res.user')
ShipmentInternal = pool.get('stock.shipment.internal')
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
planned_date = self.result.countersample_date
with Transaction().set_user(0, set_context=True):
shipment = ShipmentInternal()
shipment.reference = gettext('lims.msg_reference')
shipment.planned_date = planned_date
shipment.planned_start_date = planned_date
shipment.company = company
shipment.from_location = from_location
shipment.to_location = to_location
shipment.state = 'draft'
return shipment
def _get_stock_moves(self, fractions):
pool = Pool()
Config = pool.get('lims.configuration')
User = pool.get('res.user')
Move = pool.get('stock.move')
config_ = Config(1)
if config_.fraction_product:
product = config_.fraction_product
else:
raise UserError(gettext('lims.msg_missing_fraction_product'))
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
planned_date = self.result.countersample_date
moves = []
for fraction in fractions:
with Transaction().set_user(0, set_context=True):
move = Move()
move.product = product.id
move.fraction = fraction.id
move.quantity = fraction.packages_quantity
move.uom = product.default_uom
move.from_location = from_location
move.to_location = to_location
move.company = company
move.planned_date = planned_date
move.origin = fraction
move.state = 'draft'
moves.append(move)
return moves
def do_open(self, action):
action['pyson_domain'] = PYSONEncoder().encode([
('id', '=', self.result.shipment.id),
])
return action, {}
def transition_open(self):
return 'end'
def _get_fraction_notebook_lines_storage_force(self, fraction_id):
cursor = Transaction().connection.cursor()
pool = Pool()
NotebookLine = pool.get('lims.notebook.line')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
Service = pool.get('lims.service')
cursor.execute('SELECT nl.id '
'FROM "' + NotebookLine._table + '" nl '
'INNER JOIN "' + EntryDetailAnalysis._table + '" ad '
'ON ad.id = nl.analysis_detail '
'INNER JOIN "' + Service._table + '" srv '
'ON srv.id = nl.service '
'WHERE srv.fraction = %s ',
(fraction_id,))
return [x[0] for x in cursor.fetchall()]
class CountersampleStorageRevertStart(ModelView):
'Revert Countersamples Storage'
__name__ = 'lims.countersample.storage_revert.start'
date_from = fields.Date('Date from', required=True)
date_to = fields.Date('Date to', required=True)
location_origin = fields.Many2One('stock.location', 'Origin Location',
required=True, domain=[('type', '=', 'storage')])
class CountersampleStorageRevertEmpty(ModelView):
'Revert Countersamples Storage'
__name__ = 'lims.countersample.storage_revert.empty'
class CountersampleStorageRevertResult(ModelView):
'Revert Countersamples Storage'
__name__ = 'lims.countersample.storage_revert.result'
location_destination = fields.Many2One('stock.location',
'Destination Location', required=True,
domain=[('type', '=', 'storage')])
fractions = fields.Many2Many('lims.fraction', None, None,
'Fractions', required=True,
domain=[('id', 'in', Eval('fraction_domain'))],
depends=['fraction_domain'])
fraction_domain = fields.One2Many('lims.fraction', None,
'Fractions domain')
shipment = fields.Many2One('stock.shipment.internal', 'Internal Shipment')
class CountersampleStorageRevert(Wizard):
'Revert Countersamples Storage'
__name__ = 'lims.countersample.storage_revert'
start = StateView('lims.countersample.storage_revert.start',
'lims.lims_countersample_storage_revert_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search', 'search', 'tryton-forward', default=True),
])
search = StateTransition()
empty = StateView('lims.countersample.storage_revert.empty',
'lims.lims_countersample_storage_revert_empty_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search again', 'start', 'tryton-forward', default=True),
])
result = StateView('lims.countersample.storage_revert.result',
'lims.lims_countersample_storage_revert_result_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Revert', 'revert', 'tryton-ok', default=True),
])
revert = StateTransition()
open = StateAction('stock.act_shipment_internal_form')
def default_start(self, fields):
res = {}
for field in ('date_from', 'date_to'):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field)
for field in ('location_origin',):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field).id
return res
def transition_search(self):
Fraction = Pool().get('lims.fraction')
fractions = Fraction.search([
('countersample_date', '>=', self.start.date_from),
('countersample_date', '<=', self.start.date_to),
('current_location', '=', self.start.location_origin.id),
])
if fractions:
self.result.fractions = fractions
return 'result'
return 'empty'
def default_result(self, fields):
fractions = [f.id for f in self.result.fractions]
self.result.fractions = None
return {
'fractions': [],
'fraction_domain': fractions,
}
def transition_revert(self):
Fraction = Pool().get('lims.fraction')
fractions_to_save = []
for fraction in self.result.fractions:
fraction.countersample_location = None
fraction.countersample_date = None
fraction.expiry_date = None
fractions_to_save.append(fraction)
Fraction.save(fractions_to_save)
moves = self._get_stock_moves(self.result.fractions)
shipment = self.create_internal_shipment(moves)
if shipment:
self.result.shipment = shipment
return 'open'
return 'end'
def create_internal_shipment(self, moves):
ShipmentInternal = Pool().get('stock.shipment.internal')
shipment = self._get_internal_shipment()
if not shipment:
return
shipment.moves = moves
with Transaction().set_context(check_current_location=False):
shipment.save()
ShipmentInternal.wait([shipment])
ShipmentInternal.assign_force([shipment])
ShipmentInternal.done([shipment])
return shipment
def _get_internal_shipment(self):
pool = Pool()
User = pool.get('res.user')
Date = pool.get('ir.date')
ShipmentInternal = pool.get('stock.shipment.internal')
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
today = Date.today()
with Transaction().set_user(0, set_context=True):
shipment = ShipmentInternal()
shipment.reference = gettext('lims.msg_reference_reversion')
shipment.planned_date = today
shipment.planned_start_date = today
shipment.company = company
shipment.from_location = from_location
shipment.to_location = to_location
shipment.state = 'draft'
return shipment
def _get_stock_moves(self, fractions):
pool = Pool()
Config = pool.get('lims.configuration')
User = pool.get('res.user')
Date = pool.get('ir.date')
Move = pool.get('stock.move')
config_ = Config(1)
if config_.fraction_product:
product = config_.fraction_product
else:
raise UserError(gettext('lims.msg_missing_fraction_product'))
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
today = Date.today()
moves = []
for fraction in fractions:
with Transaction().set_user(0, set_context=True):
move = Move()
move.product = product.id
move.fraction = fraction.id
move.quantity = fraction.packages_quantity
move.uom = product.default_uom
move.from_location = from_location
move.to_location = to_location
move.company = company
move.planned_date = today
move.origin = fraction
move.state = 'draft'
moves.append(move)
return moves
def do_open(self, action):
action['pyson_domain'] = PYSONEncoder().encode([
('id', '=', self.result.shipment.id),
])
return action, {}
def transition_open(self):
return 'end'
class CountersampleDischargeStart(ModelView):
'Countersamples Discharge'
__name__ = 'lims.countersample.discharge.start'
expiry_date_from = fields.Date('Expiry date from', required=True)
expiry_date_to = fields.Date('to', required=True)
date_from = fields.Date('Date from', required=True)
date_to = fields.Date('to', required=True)
location_origin = fields.Many2One('stock.location', 'Origin Location',
required=True, domain=[('type', '=', 'storage')])
class CountersampleDischargeEmpty(ModelView):
'Countersamples Discharge'
__name__ = 'lims.countersample.discharge.empty'
class CountersampleDischargeResult(ModelView):
'Countersamples Discharge'
__name__ = 'lims.countersample.discharge.result'
location_destination = fields.Many2One('stock.location',
'Destination Location', required=True,
domain=[('type', '=', 'lost_found')])
discharge_date = fields.Date('Discharge date', required=True)
fractions = fields.Many2Many('lims.fraction', None, None,
'Fractions', required=True,
domain=[('id', 'in', Eval('fraction_domain'))],
depends=['fraction_domain'])
fraction_domain = fields.One2Many('lims.fraction', None,
'Fractions domain')
shipment = fields.Many2One('stock.shipment.internal', 'Internal Shipment')
class CountersampleDischarge(Wizard):
'Countersamples Discharge'
__name__ = 'lims.countersample.discharge'
start = StateView('lims.countersample.discharge.start',
'lims.lims_countersample_discharge_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search', 'search', 'tryton-forward', default=True),
])
search = StateTransition()
empty = StateView('lims.countersample.discharge.empty',
'lims.lims_countersample_discharge_empty_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search again', 'start', 'tryton-forward', default=True),
])
result = StateView('lims.countersample.discharge.result',
'lims.lims_countersample_discharge_result_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Discharge', 'discharge', 'tryton-ok', default=True),
])
discharge = StateTransition()
open = StateAction('stock.act_shipment_internal_form')
def default_start(self, fields):
res = {}
for field in ('expiry_date_from', 'expiry_date_to',
'date_from', 'date_to'):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field)
for field in ('location_origin',):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field).id
return res
def transition_search(self):
Fraction = Pool().get('lims.fraction')
fractions = Fraction.search([
('discharge_date', '=', None),
('sample.date2', '>=', self.start.date_from),
('sample.date2', '<=', self.start.date_to),
('expiry_date', '>=', self.start.expiry_date_from),
('expiry_date', '<=', self.start.expiry_date_to),
('current_location', '=', self.start.location_origin.id),
])
if fractions:
self.result.fractions = fractions
return 'result'
return 'empty'
def default_result(self, fields):
fractions = [f.id for f in self.result.fractions]
self.result.fractions = None
return {
'fractions': [],
'fraction_domain': fractions,
}
def transition_discharge(self):
Fraction = Pool().get('lims.fraction')
discharge_date = self.result.discharge_date
fractions_to_save = []
for fraction in self.result.fractions:
fraction.discharge_date = discharge_date
fractions_to_save.append(fraction)
Fraction.save(fractions_to_save)
moves = self._get_stock_moves(self.result.fractions)
shipment = self.create_internal_shipment(moves)
if shipment:
self.result.shipment = shipment
return 'open'
return 'end'
def create_internal_shipment(self, moves):
ShipmentInternal = Pool().get('stock.shipment.internal')
shipment = self._get_internal_shipment()
if not shipment:
return
shipment.moves = moves
with Transaction().set_context(check_current_location=False):
shipment.save()
ShipmentInternal.wait([shipment])
ShipmentInternal.assign_force([shipment])
ShipmentInternal.done([shipment])
return shipment
def _get_internal_shipment(self):
pool = Pool()
User = pool.get('res.user')
ShipmentInternal = pool.get('stock.shipment.internal')
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
planned_date = self.result.discharge_date
with Transaction().set_user(0, set_context=True):
shipment = ShipmentInternal()
shipment.reference = gettext('lims.msg_reference_discharge')
shipment.planned_date = planned_date
shipment.planned_start_date = planned_date
shipment.company = company
shipment.from_location = from_location
shipment.to_location = to_location
shipment.state = 'draft'
return shipment
def _get_stock_moves(self, fractions):
pool = Pool()
Config = pool.get('lims.configuration')
User = pool.get('res.user')
Move = pool.get('stock.move')
config_ = Config(1)
if config_.fraction_product:
product = config_.fraction_product
else:
raise UserError(gettext('lims.msg_missing_fraction_product'))
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
planned_date = self.result.discharge_date
moves = []
for fraction in fractions:
with Transaction().set_user(0, set_context=True):
move = Move()
move.product = product.id
move.fraction = fraction.id
move.quantity = fraction.packages_quantity
move.uom = product.default_uom
move.from_location = from_location
move.to_location = to_location
move.company = company
move.planned_date = planned_date
move.origin = fraction
move.state = 'draft'
moves.append(move)
return moves
def do_open(self, action):
action['pyson_domain'] = PYSONEncoder().encode([
('id', '=', self.result.shipment.id),
])
return action, {}
def transition_open(self):
return 'end'
class FractionDischargeStart(ModelView):
'Fractions Discharge'
__name__ = 'lims.fraction.discharge.start'
date_from = fields.Date('Date from', required=True)
date_to = fields.Date('Date to', required=True)
location_origin = fields.Many2One('stock.location', 'Origin Location',
required=True, domain=[('type', '=', 'storage')])
discharge_force = fields.Boolean('Discharge force')
class FractionDischargeEmpty(ModelView):
'Fractions Discharge'
__name__ = 'lims.fraction.discharge.empty'
class FractionDischargeResult(ModelView):
'Fractions Discharge'
__name__ = 'lims.fraction.discharge.result'
location_destination = fields.Many2One('stock.location',
'Destination Location', required=True,
domain=[('type', '=', 'lost_found')])
discharge_date = fields.Date('Discharge date', required=True)
fractions = fields.Many2Many('lims.fraction', None, None,
'Fractions', required=True,
domain=[('id', 'in', Eval('fraction_domain'))],
depends=['fraction_domain'])
fraction_domain = fields.One2Many('lims.fraction', None,
'Fractions domain')
shipment = fields.Many2One('stock.shipment.internal', 'Internal Shipment')
class FractionDischarge(Wizard):
'Fractions Discharge'
__name__ = 'lims.fraction.discharge'
start = StateView('lims.fraction.discharge.start',
'lims.lims_fraction_discharge_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search', 'search', 'tryton-forward', default=True),
])
search = StateTransition()
empty = StateView('lims.fraction.discharge.empty',
'lims.lims_fraction_discharge_empty_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search again', 'start', 'tryton-forward', default=True),
])
result = StateView('lims.fraction.discharge.result',
'lims.lims_fraction_discharge_result_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Discharge', 'discharge', 'tryton-ok', default=True),
])
discharge = StateTransition()
open = StateAction('stock.act_shipment_internal_form')
def default_start(self, fields):
res = {}
for field in ('date_from', 'date_to'):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field)
for field in ('location_origin',):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field).id
return res
def transition_search(self):
Fraction = Pool().get('lims.fraction')
if self.start.discharge_force is True:
fractions = Fraction.search([
('discharge_date', '=', None),
('sample.date2', '>=', self.start.date_from),
('sample.date2', '<=', self.start.date_to),
('current_location', '=', self.start.location_origin.id),
])
else:
fractions = Fraction.search([
('discharge_date', '=', None),
('sample.date2', '>=', self.start.date_from),
('sample.date2', '<=', self.start.date_to),
('has_results_report', '=', False),
('current_location', '=', self.start.location_origin.id),
])
if fractions:
self.result.fractions = fractions
return 'result'
return 'empty'
def default_result(self, fields):
fractions = [f.id for f in self.result.fractions]
self.result.fractions = None
return {
'fractions': [],
'fraction_domain': fractions,
}
def transition_discharge(self):
Fraction = Pool().get('lims.fraction')
discharge_date = self.result.discharge_date
fractions_to_save = []
for fraction in self.result.fractions:
fraction.discharge_date = discharge_date
fractions_to_save.append(fraction)
Fraction.save(fractions_to_save)
moves = self._get_stock_moves(self.result.fractions)
shipment = self.create_internal_shipment(moves)
if shipment:
self.result.shipment = shipment
return 'open'
return 'end'
def create_internal_shipment(self, moves):
ShipmentInternal = Pool().get('stock.shipment.internal')
shipment = self._get_internal_shipment()
if not shipment:
return
shipment.moves = moves
with Transaction().set_context(check_current_location=False):
shipment.save()
ShipmentInternal.wait([shipment])
ShipmentInternal.assign_force([shipment])
ShipmentInternal.done([shipment])
return shipment
def _get_internal_shipment(self):
pool = Pool()
User = pool.get('res.user')
ShipmentInternal = pool.get('stock.shipment.internal')
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
planned_date = self.result.discharge_date
with Transaction().set_user(0, set_context=True):
shipment = ShipmentInternal()
shipment.reference = gettext('lims.msg_reference_fractions_discharge')
shipment.planned_date = planned_date
shipment.planned_start_date = planned_date
shipment.company = company
shipment.from_location = from_location
shipment.to_location = to_location
shipment.state = 'draft'
return shipment
def _get_stock_moves(self, fractions):
pool = Pool()
Config = pool.get('lims.configuration')
User = pool.get('res.user')
Move = pool.get('stock.move')
config_ = Config(1)
if config_.fraction_product:
product = config_.fraction_product
else:
raise UserError(gettext('lims.msg_missing_fraction_product'))
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
planned_date = self.result.discharge_date
moves = []
for fraction in fractions:
with Transaction().set_user(0, set_context=True):
move = Move()
move.product = product.id
move.fraction = fraction.id
move.quantity = fraction.packages_quantity
move.uom = product.default_uom
move.from_location = from_location
move.to_location = to_location
move.company = company
move.planned_date = planned_date
move.origin = fraction
move.state = 'draft'
moves.append(move)
return moves
def do_open(self, action):
action['pyson_domain'] = PYSONEncoder().encode([
('id', '=', self.result.shipment.id),
])
return action, {}
def transition_open(self):
return 'end'
class FractionDischargeRevertStart(ModelView):
'Revert Fractions Discharge'
__name__ = 'lims.fraction.discharge_revert.start'
date_from = fields.Date('Date from', required=True)
date_to = fields.Date('Date to', required=True)
location_origin = fields.Many2One('stock.location', 'Origin Location',
required=True, domain=[('type', '=', 'lost_found')])
class FractionDischargeRevertEmpty(ModelView):
'Revert Fractions Discharge'
__name__ = 'lims.fraction.discharge_revert.empty'
class FractionDischargeRevertResult(ModelView):
'Revert Fractions Discharge'
__name__ = 'lims.fraction.discharge_revert.result'
location_destination = fields.Many2One('stock.location',
'Destination Location', required=True,
domain=[('type', '=', 'storage')])
fractions = fields.Many2Many('lims.fraction', None, None,
'Fractions', required=True,
domain=[('id', 'in', Eval('fraction_domain'))],
depends=['fraction_domain'])
fraction_domain = fields.One2Many('lims.fraction', None,
'Fractions domain')
shipment = fields.Many2One('stock.shipment.internal', 'Internal Shipment')
class FractionDischargeRevert(Wizard):
'Revert Fractions Discharge'
__name__ = 'lims.fraction.discharge_revert'
start = StateView('lims.fraction.discharge_revert.start',
'lims.lims_fraction_discharge_revert_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search', 'search', 'tryton-forward', default=True),
])
search = StateTransition()
empty = StateView('lims.fraction.discharge_revert.empty',
'lims.lims_fraction_discharge_revert_empty_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Search again', 'start', 'tryton-forward', default=True),
])
result = StateView('lims.fraction.discharge_revert.result',
'lims.lims_fraction_discharge_revert_result_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Revert', 'revert', 'tryton-ok', default=True),
])
revert = StateTransition()
open = StateAction('stock.act_shipment_internal_form')
def default_start(self, fields):
res = {}
for field in ('date_from', 'date_to'):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field)
for field in ('location_origin',):
if (hasattr(self.start, field) and getattr(self.start, field)):
res[field] = getattr(self.start, field).id
return res
def transition_search(self):
Fraction = Pool().get('lims.fraction')
fractions = Fraction.search([
('discharge_date', '>=', self.start.date_from),
('discharge_date', '<=', self.start.date_to),
('current_location', '=', self.start.location_origin.id),
])
if fractions:
self.result.fractions = fractions
return 'result'
return 'empty'
def default_result(self, fields):
fractions = [f.id for f in self.result.fractions]
self.result.fractions = None
return {
'fractions': [],
'fraction_domain': fractions,
}
def transition_revert(self):
Fraction = Pool().get('lims.fraction')
fractions_to_save = []
for fraction in self.result.fractions:
fraction.discharge_date = None
fractions_to_save.append(fraction)
Fraction.save(fractions_to_save)
moves = self._get_stock_moves(self.result.fractions)
shipment = self.create_internal_shipment(moves)
if shipment:
self.result.shipment = shipment
return 'open'
return 'end'
def create_internal_shipment(self, moves):
ShipmentInternal = Pool().get('stock.shipment.internal')
shipment = self._get_internal_shipment()
if not shipment:
return
shipment.moves = moves
with Transaction().set_context(check_current_location=False):
shipment.save()
ShipmentInternal.wait([shipment])
ShipmentInternal.assign_force([shipment])
ShipmentInternal.done([shipment])
return shipment
def _get_internal_shipment(self):
pool = Pool()
User = pool.get('res.user')
Date = pool.get('ir.date')
ShipmentInternal = pool.get('stock.shipment.internal')
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
today = Date.today()
with Transaction().set_user(0, set_context=True):
shipment = ShipmentInternal()
shipment.reference = gettext('lims.msg_reference')
shipment.planned_date = today
shipment.planned_start_date = today
shipment.company = company
shipment.from_location = from_location
shipment.to_location = to_location
shipment.state = 'draft'
return shipment
def _get_stock_moves(self, fractions):
pool = Pool()
Config = pool.get('lims.configuration')
User = pool.get('res.user')
Date = pool.get('ir.date')
Move = pool.get('stock.move')
config_ = Config(1)
if config_.fraction_product:
product = config_.fraction_product
else:
raise UserError(gettext('lims.msg_missing_fraction_product'))
company = User(Transaction().user).company
from_location = self.start.location_origin
to_location = self.result.location_destination
today = Date.today()
moves = []
for fraction in fractions:
with Transaction().set_user(0, set_context=True):
move = Move()
move.product = product.id
move.fraction = fraction.id
move.quantity = fraction.packages_quantity
move.uom = product.default_uom
move.from_location = from_location
move.to_location = to_location
move.company = company
move.planned_date = today
move.origin = fraction
move.state = 'draft'
moves.append(move)
return moves
def do_open(self, action):
action['pyson_domain'] = PYSONEncoder().encode([
('id', '=', self.result.shipment.id),
])
return action, {}
def transition_open(self):
return 'end'
class CreateSampleStart(ModelView):
'Create Sample'
__name__ = 'lims.create_sample.start'
party = fields.Many2One('party.party', 'Party')
date = fields.DateTime('Date', required=True)
producer = fields.Many2One('lims.sample.producer', 'Producer company',
domain=[('party', '=', Eval('party'))], depends=['party'])
sample_client_description = fields.Char(
'Product described by the client', required=True)
sample_client_description_eng = fields.Char(
'Product described by the client (English)')
product_type = fields.Many2One('lims.product.type', 'Product type',
required=True, states={'readonly': Bool(Eval('services'))},
domain=[('id', 'in', Eval('product_type_domain'))],
depends=['product_type_domain', 'services'])
product_type_domain = fields.Many2Many('lims.product.type', None, None,
'Product type domain')
matrix = fields.Many2One('lims.matrix', 'Matrix', required=True,
states={'readonly': Bool(Eval('services'))},
domain=[('id', 'in', Eval('matrix_domain'))],
depends=['matrix_domain', 'services'])
matrix_domain = fields.Many2Many('lims.matrix', None, None,
'Matrix domain')
obj_description = fields.Many2One('lims.objective_description',
'Objective description', depends=['product_type', 'matrix'],
domain=[
('product_type', '=', Eval('product_type')),
('matrix', '=', Eval('matrix')),
])
obj_description_manual = fields.Char(
'Manual Objective description', depends=['obj_description'],
states={'readonly': Bool(Eval('obj_description'))})
obj_description_manual_eng = fields.Char(
'Manual Objective description (English)', depends=['obj_description'],
states={'readonly': Bool(Eval('obj_description'))})
fraction_state = fields.Many2One('lims.packaging.integrity',
'Package state', required=True)
package_type = fields.Many2One('lims.packaging.type', 'Package type',
required=True)
packages_quantity = fields.Integer('Packages quantity', required=True)
size = fields.Float('Size')
size_uom = fields.Many2One('product.uom', 'Size UoM',
domain=[('category.lims_only_available', '=', True)])
restricted_entry = fields.Boolean('Restricted entry',
states={'readonly': True})
zone = fields.Many2One('lims.zone', 'Zone', required=True)
trace_report = fields.Boolean('Trace report')
report_comments = fields.Text('Report comments', translate=True)
comments = fields.Text('Comments')
variety = fields.Many2One('lims.variety', 'Variety',
domain=[('varieties.matrix', '=', Eval('matrix'))],
depends=['matrix'])
labels = fields.Text('Labels')
fraction_type = fields.Many2One('lims.fraction.type', 'Fraction type',
required=True)
storage_location = fields.Many2One('stock.location', 'Storage location',
required=True, domain=[('type', '=', 'storage')])
storage_time = fields.Integer('Storage time (in months)', required=True)
weight = fields.Float('Weight')
weight_uom = fields.Many2One('product.uom', 'Weight UoM',
domain=[('category.lims_only_available', '=', True)])
shared = fields.Boolean('Shared')
analysis_domain = fields.Function(fields.Many2Many('lims.analysis',
None, None, 'Analysis domain'), 'on_change_with_analysis_domain')
services = fields.One2Many('lims.create_sample.service', None, 'Services',
required=True, depends=['analysis_domain', 'product_type', 'matrix'],
context={
'analysis_domain': Eval('analysis_domain'),
'product_type': Eval('product_type'), 'matrix': Eval('matrix'),
})
@staticmethod
def default_date():
return datetime.now()
@staticmethod
def default_restricted_entry():
return False
@staticmethod
def default_zone():
Entry = Pool().get('lims.entry')
entry_id = Transaction().context.get('active_id', None)
if entry_id:
entry = Entry(entry_id)
if entry.party.entry_zone:
return entry.party.entry_zone.id
@staticmethod
def default_trace_report():
return False
@staticmethod
def default_storage_time():
return 3
@staticmethod
def default_product_type_domain():
cursor = Transaction().connection.cursor()
Typification = Pool().get('lims.typification')
cursor.execute('SELECT DISTINCT(product_type) '
'FROM "' + Typification._table + '" '
'WHERE valid')
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
@fields.depends('product_type', 'matrix', 'matrix_domain')
def on_change_product_type(self):
matrix_domain = []
matrix = None
if self.product_type:
matrix_domain = self.on_change_with_matrix_domain()
if len(matrix_domain) == 1:
matrix = matrix_domain[0]
self.matrix_domain = matrix_domain
self.matrix = matrix
@fields.depends('product_type')
def on_change_with_matrix_domain(self, name=None):
cursor = Transaction().connection.cursor()
Typification = Pool().get('lims.typification')
if not self.product_type:
return []
cursor.execute('SELECT DISTINCT(matrix) '
'FROM "' + Typification._table + '" '
'WHERE product_type = %s '
'AND valid',
(self.product_type.id,))
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
@fields.depends('product_type', 'matrix')
def on_change_with_analysis_domain(self, name=None):
cursor = Transaction().connection.cursor()
pool = Pool()
Typification = pool.get('lims.typification')
CalculatedTypification = pool.get('lims.typification.calculated')
Analysis = pool.get('lims.analysis')
if not self.product_type or not self.matrix:
return []
cursor.execute('SELECT DISTINCT(analysis) '
'FROM "' + Typification._table + '" '
'WHERE product_type = %s '
'AND matrix = %s '
'AND valid',
(self.product_type.id, self.matrix.id))
typified_analysis = [a[0] for a in cursor.fetchall()]
if not typified_analysis:
return []
cursor.execute('SELECT id '
'FROM "' + Analysis._table + '" '
'WHERE type = \'analysis\' '
'AND behavior IN (\'normal\', \'internal_relation\') '
'AND disable_as_individual IS TRUE '
'AND state = \'active\'')
disabled_analysis = [a[0] for a in cursor.fetchall()]
if disabled_analysis:
typified_analysis = list(set(typified_analysis) -
set(disabled_analysis))
cursor.execute('SELECT DISTINCT(analysis) '
'FROM "' + CalculatedTypification._table + '" '
'WHERE product_type = %s '
'AND matrix = %s',
(self.product_type.id, self.matrix.id))
typified_sets_groups = [a[0] for a in cursor.fetchall()]
cursor.execute('SELECT id '
'FROM "' + Analysis._table + '" '
'WHERE behavior = \'additional\' '
'AND state = \'active\'')
additional_analysis = [a[0] for a in cursor.fetchall()]
return typified_analysis + typified_sets_groups + additional_analysis
@fields.depends('product_type', 'matrix', 'zone',
'_parent_product_type.restricted_entry',
'_parent_matrix.restricted_entry', '_parent_zone.restricted_entry')
def on_change_with_restricted_entry(self, name=None):
return (self.product_type and self.product_type.restricted_entry and
self.matrix and self.matrix.restricted_entry and
self.zone and self.zone.restricted_entry)
@fields.depends('fraction_type', 'storage_location', 'package_type',
'fraction_state')
def on_change_fraction_type(self):
if not self.fraction_type:
return
if (not self.storage_location and
self.fraction_type.default_storage_location):
self.storage_location = self.fraction_type.default_storage_location
if (not self.package_type and
self.fraction_type.default_package_type):
self.package_type = self.fraction_type.default_package_type
if (not self.fraction_state and
self.fraction_type.default_fraction_state):
self.fraction_state = self.fraction_type.default_fraction_state
@fields.depends('fraction_type', 'storage_location',
'_parent_fraction_type.max_storage_time',
'_parent_storage_location.storage_time')
def on_change_with_storage_time(self, name=None):
if self.fraction_type and self.fraction_type.max_storage_time:
return self.fraction_type.max_storage_time
if self.storage_location and self.storage_location.storage_time:
return self.storage_location.storage_time
return 3
@fields.depends('product_type', 'matrix')
def on_change_with_obj_description(self):
cursor = Transaction().connection.cursor()
ObjectiveDescription = Pool().get('lims.objective_description')
if not self.product_type or not self.matrix:
return None
cursor.execute('SELECT id '
'FROM "' + ObjectiveDescription._table + '" '
'WHERE product_type = %s '
'AND matrix = %s',
(self.product_type.id, self.matrix.id))
res = cursor.fetchone()
return res and res[0] or None
class CreateSampleService(ModelView):
'Service'
__name__ = 'lims.create_sample.service'
analysis = fields.Many2One('lims.analysis', 'Analysis/Set/Group',
required=True, domain=[
('id', 'in', Eval('context', {}).get('analysis_domain', [])),
])
laboratory = fields.Many2One('lims.laboratory', 'Laboratory',
domain=[('id', 'in', Eval('laboratory_domain'))],
states={'required': Bool(Eval('laboratory_domain'))},
depends=['laboratory_domain'])
laboratory_domain = fields.Many2Many('lims.laboratory',
None, None, 'Laboratory domain')
method = fields.Many2One('lims.lab.method', 'Method',
domain=[('id', 'in', Eval('method_domain'))],
states={'required': Bool(Eval('method_domain'))},
depends=['method_domain'])
method_domain = fields.Many2Many('lims.lab.method',
None, None, 'Method domain')
device = fields.Many2One('lims.lab.device', 'Device',
domain=[('id', 'in', Eval('device_domain'))],
states={'required': Bool(Eval('device_domain'))},
depends=['device_domain'])
device_domain = fields.Many2Many('lims.lab.device',
None, None, 'Device domain')
urgent = fields.Boolean('Urgent')
priority = fields.Integer('Priority')
report_date = fields.Date('Date agreed for result')
divide = fields.Boolean('Divide')
@staticmethod
def default_urgent():
return False
@staticmethod
def default_priority():
return 0
@staticmethod
def default_divide():
return False
@fields.depends('analysis')
def on_change_analysis(self):
analysis_id = self.analysis.id if self.analysis else None
product_type_id = Transaction().context.get('product_type', None)
matrix_id = Transaction().context.get('matrix', None)
laboratory_id = None
laboratory_domain = []
method_id = None
method_domain = []
device_id = None
device_domain = []
if analysis_id:
laboratory_domain = self._get_laboratory_domain(analysis_id)
if len(laboratory_domain) == 1:
laboratory_id = laboratory_domain[0]
method_domain = self._get_method_domain(analysis_id,
product_type_id, matrix_id)
if len(method_domain) == 1:
method_id = method_domain[0]
if laboratory_id:
device_domain = self._get_device_domain(analysis_id,
laboratory_id)
if len(device_domain) == 1:
device_id = device_domain[0]
self.laboratory_domain = laboratory_domain
self.laboratory = laboratory_id
self.method_domain = method_domain
self.method = method_id
self.device_domain = device_domain
self.device = device_id
@fields.depends('analysis', 'laboratory')
def on_change_laboratory(self):
analysis_id = self.analysis.id if self.analysis else None
laboratory_id = self.laboratory.id if self.laboratory else None
device_id = None
device_domain = []
if analysis_id and laboratory_id:
device_domain = self._get_device_domain(analysis_id,
laboratory_id)
if len(device_domain) == 1:
device_id = device_domain[0]
self.device_domain = device_domain
self.device = device_id
@staticmethod
def _get_laboratory_domain(analysis_id):
cursor = Transaction().connection.cursor()
AnalysisLaboratory = Pool().get('lims.analysis-laboratory')
cursor.execute('SELECT DISTINCT(laboratory) '
'FROM "' + AnalysisLaboratory._table + '" '
'WHERE analysis = %s',
(analysis_id,))
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
@staticmethod
def _get_method_domain(analysis_id, product_type_id, matrix_id):
cursor = Transaction().connection.cursor()
Typification = Pool().get('lims.typification')
cursor.execute('SELECT DISTINCT(method) '
'FROM "' + Typification._table + '" '
'WHERE product_type = %s '
'AND matrix = %s '
'AND analysis = %s '
'AND valid',
(product_type_id, matrix_id, analysis_id))
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
@staticmethod
def _get_device_domain(analysis_id, laboratory_id):
cursor = Transaction().connection.cursor()
AnalysisDevice = Pool().get('lims.analysis.device')
cursor.execute('SELECT DISTINCT(device) '
'FROM "' + AnalysisDevice._table + '" '
'WHERE active IS TRUE '
'AND analysis = %s '
'AND laboratory = %s '
'AND by_default IS TRUE',
(analysis_id, laboratory_id))
res = cursor.fetchall()
if not res:
return []
return [x[0] for x in res]
class CreateSample(Wizard):
'Create Sample'
__name__ = 'lims.create_sample'
start = StateView('lims.create_sample.start',
'lims.lims_create_sample_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Create', 'create_', 'tryton-ok', default=True),
])
create_ = StateTransition()
def default_start(self, fields):
Entry = Pool().get('lims.entry')
entry = Entry(Transaction().context['active_id'])
return {
'party': entry.party.id,
}
def transition_create_(self):
# TODO: Remove logs
logger = logging.getLogger(__name__)
logger.info('-- CreateSample().transition_create_():INIT --')
Sample = Pool().get('lims.sample')
entry_id = Transaction().context['active_id']
samples_defaults = self._get_samples_defaults(entry_id)
logger.info('.. Sample.create(..)')
sample, = Sample.create(samples_defaults)
if (hasattr(self.start, 'sample_client_description_eng') and
getattr(self.start, 'sample_client_description_eng')):
with Transaction().set_context(language='en'):
sample_eng = Sample(sample.id)
sample_eng.sample_client_description = (
self.start.sample_client_description_eng)
sample_eng.save()
if (hasattr(self.start, 'obj_description_manual_eng') and
getattr(self.start, 'obj_description_manual_eng')):
with Transaction().set_context(language='en'):
sample_eng = Sample(sample.id)
sample_eng.obj_description_manual = (
self.start.obj_description_manual_eng)
sample_eng.save()
labels_list = self._get_labels_list(self.start.labels)
if len(labels_list) > 1:
logger.info('.. Sample.copy(..): %s' % (len(labels_list) - 1))
for label in labels_list[1:]:
Sample.copy([sample], default={
'label': label,
})
logger.info('-- CreateSample().transition_create_():END --')
return 'end'
def _get_samples_defaults(self, entry_id):
obj_description_id = None
if (hasattr(self.start, 'obj_description') and
getattr(self.start, 'obj_description')):
obj_description_id = getattr(self.start, 'obj_description').id
producer_id = None
if (hasattr(self.start, 'producer') and
getattr(self.start, 'producer')):
producer_id = getattr(self.start, 'producer').id
size = (hasattr(self.start, 'size') and
getattr(self.start, 'size') or None)
size_uom_id = None
if (hasattr(self.start, 'size_uom') and
getattr(self.start, 'size_uom')):
size_uom_id = getattr(self.start, 'size_uom').id
zone_id = None
if (hasattr(self.start, 'zone') and
getattr(self.start, 'zone')):
zone_id = getattr(self.start, 'zone').id
restricted_entry = (hasattr(self.start, 'restricted_entry') and
getattr(self.start, 'restricted_entry') or False)
variety_id = None
if (hasattr(self.start, 'variety') and
getattr(self.start, 'variety')):
variety_id = getattr(self.start, 'variety').id
weight = (hasattr(self.start, 'weight') and
getattr(self.start, 'weight') or None)
weight_uom_id = None
if (hasattr(self.start, 'weight_uom') and
getattr(self.start, 'weight_uom')):
weight_uom_id = getattr(self.start, 'weight_uom').id
shared = (hasattr(self.start, 'shared') and
getattr(self.start, 'shared') or False)
trace_report = (hasattr(self.start, 'trace_report') and
getattr(self.start, 'trace_report') or False)
report_comments = (hasattr(self.start, 'report_comments') and
getattr(self.start, 'report_comments') or None)
comments = (hasattr(self.start, 'comments') and
getattr(self.start, 'comments') or None)
# services data
services_defaults = []
for service in self.start.services:
service_defaults = {
'analysis': service.analysis.id,
'laboratory': (service.laboratory.id if service.laboratory
else None),
'method': service.method.id if service.method else None,
'device': service.device.id if service.device else None,
'urgent': service.urgent,
'priority': service.priority,
'report_date': service.report_date,
'divide': service.divide,
}
services_defaults.append(service_defaults)
# samples data
samples_defaults = []
labels_list = self._get_labels_list(self.start.labels)
for label in labels_list[:1]:
# fraction data
fraction_defaults = {
'type': self.start.fraction_type.id,
'storage_location': self.start.storage_location.id,
'storage_time': self.start.storage_time,
'weight': weight,
'weight_uom': weight_uom_id,
'packages_quantity': self.start.packages_quantity,
'size': size,
'size_uom': size_uom_id,
'shared': shared,
'package_type': self.start.package_type.id,
'fraction_state': self.start.fraction_state.id,
'services': [('create', services_defaults)],
}
sample_defaults = {
'entry': entry_id,
'date': self.start.date,
'producer': producer_id,
'sample_client_description': (
self.start.sample_client_description),
'product_type': self.start.product_type.id,
'matrix': self.start.matrix.id,
'obj_description': obj_description_id,
'obj_description_manual': self.start.obj_description_manual,
'package_state': self.start.fraction_state.id,
'package_type': self.start.package_type.id,
'packages_quantity': self.start.packages_quantity,
'size': size,
'size_uom': size_uom_id,
'restricted_entry': restricted_entry,
'zone': zone_id,
'trace_report': trace_report,
'report_comments': report_comments,
'comments': comments,
'variety': variety_id,
'label': label,
'fractions': [('create', [fraction_defaults])],
}
samples_defaults.append(sample_defaults)
return samples_defaults
def _get_labels_list(self, labels=None):
if not labels:
return [None]
return labels.split('\n')
class CountersampleStoragePrintStart(ModelView):
'Countersamples Storage Report'
__name__ = 'lims.countersample.storage.print.start'
report_date_from = fields.Date('Report date from', required=True)
report_date_to = fields.Date('to', required=True)
date_from = fields.Date('Date from', required=True)
date_to = fields.Date('to', required=True)
class CountersampleStoragePrint(Wizard):
'Countersamples Storage Report'
__name__ = 'lims.countersample.storage.print'
start = StateView('lims.countersample.storage.print.start',
'lims.lims_countersample_storage_print_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Print', 'print_', 'tryton-print', default=True),
])
print_ = StateAction('lims.report_countersample_storage')
def do_print_(self, action):
data = {
'report_date_from': self.start.report_date_from,
'report_date_to': self.start.report_date_to,
'date_from': self.start.date_from,
'date_to': self.start.date_to,
}
return action, data
def transition_print_(self):
return 'end'
class CountersampleStorageReport(Report):
'Countersamples Storage Report'
__name__ = 'lims.countersample.storage.report'
@classmethod
def get_context(cls, records, data):
pool = Pool()
Fraction = pool.get('lims.fraction')
NotebookLine = pool.get('lims.notebook.line')
report_context = super(CountersampleStorageReport,
cls).get_context(records, data)
report_context['company'] = report_context['user'].company
report_context['report_date_from'] = data['report_date_from']
report_context['report_date_to'] = data['report_date_to']
report_context['date_from'] = data['date_from']
report_context['date_to'] = data['date_to']
f_list = []
fractions = Fraction.search([
('countersample_date', '=', None),
('sample.date2', '>=', data['date_from']),
('sample.date2', '<=', data['date_to']),
('has_results_report', '=', True),
], order=[('number', 'ASC')])
for f in fractions:
notebook_lines_ids = cls._get_fraction_notebook_lines(f.id)
if not notebook_lines_ids:
continue
notebook_lines = NotebookLine.search([
('id', 'in', notebook_lines_ids),
])
if not notebook_lines:
continue
# Check not accepted (with repetitions)
to_check = []
oks = []
for line in notebook_lines:
key = line.analysis.id
if not line.accepted:
to_check.append(key)
else:
oks.append(key)
to_check = list(set(to_check))
oks = list(set(oks))
if to_check:
for key in oks:
if key in to_check:
to_check.remove(key)
if len(to_check) > 0:
continue
all_results_reported = True
for nl in notebook_lines:
if not nl.accepted:
continue
if not nl.results_report:
all_results_reported = False
break
if not cls._get_line_reported(nl, data['report_date_from'],
data['report_date_to']):
all_results_reported = False
break
if all_results_reported:
f_list.append(f)
objects = {}
for fraction in f_list:
if fraction.current_location.id not in objects:
objects[fraction.current_location.id] = {
'location': fraction.current_location.rec_name,
'fractions': [],
}
objects[fraction.current_location.id]['fractions'].append({
'number': fraction.get_formated_number('pt-m-sy-sn-fn'),
'type': fraction.type.code,
'packages': '%s %s' % (fraction.packages_quantity or '',
fraction.package_type.description if fraction.package_type
else ''),
'entry_date': fraction.sample.date2,
'results_reports': cls.get_fraction_results_reports(
fraction.id),
'stp_number': (fraction.sample.entry.project.code
if fraction.sample.entry.project else ''),
'comments': (fraction.comments
if fraction.comments else ''),
})
ordered_objects = sorted(list(objects.values()),
key=lambda x: x['location'])
report_context['objects'] = ordered_objects
return report_context
@classmethod
def _get_fraction_notebook_lines(cls, fraction_id):
cursor = Transaction().connection.cursor()
pool = Pool()
NotebookLine = pool.get('lims.notebook.line')
EntryDetailAnalysis = pool.get('lims.entry.detail.analysis')
Service = pool.get('lims.service')
cursor.execute('SELECT nl.id '
'FROM "' + NotebookLine._table + '" nl '
'INNER JOIN "' + EntryDetailAnalysis._table + '" ad '
'ON ad.id = nl.analysis_detail '
'INNER JOIN "' + Service._table + '" srv '
'ON srv.id = nl.service '
'WHERE srv.fraction = %s '
'AND nl.report = TRUE '
'AND nl.annulled = FALSE',
(fraction_id,))
return [x[0] for x in cursor.fetchall()]
@classmethod
def _get_line_reported(cls, nl, date_from, date_to):
cursor = Transaction().connection.cursor()
pool = Pool()
ReportVersionDetailLine = pool.get(
'lims.results_report.version.detail.line')
ReportVersionDetail = pool.get('lims.results_report.version.detail')
ReportVersion = pool.get('lims.results_report.version')
cursor.execute('SELECT rvdl.id '
'FROM "' + ReportVersionDetailLine._table + '" rvdl '
'INNER JOIN "' + ReportVersionDetail._table + '" rvd '
'ON rvd.id = rvdl.report_version_detail '
'INNER JOIN "' + ReportVersion._table + '" rv '
'ON rv.id = rvd.report_version '
'WHERE rvdl.notebook_line = %s '
'AND rv.results_report = %s '
'AND DATE(COALESCE(rvd.write_date, rvd.create_date)) '
'BETWEEN %s::date AND %s::date',
(nl.id, nl.results_report.id, date_from, date_to))
return cursor.fetchone()
@classmethod
def get_fraction_results_reports(cls, fraction_id):
cursor = Transaction().connection.cursor()
pool = Pool()
Service = pool.get('lims.service')
NotebookLine = pool.get('lims.notebook.line')
ResultsReport = pool.get('lims.results_report')
cursor.execute('SELECT DISTINCT(nl.results_report) '
'FROM "' + Service._table + '" s '
'INNER JOIN "' + NotebookLine._table + '" nl '
'ON s.id = nl.service '
'WHERE s.fraction = %s '
'AND nl.results_report IS NOT NULL',
(fraction_id,))
res = cursor.fetchall()
if not res:
return ''
result = []
for report_id in res:
results_report = ResultsReport(report_id[0])
result.append('%s (%s)' % (results_report.rec_name,
results_report.create_date2.strftime("%d/%m/%Y")))
return ' '.join(result)
class CountersampleDischargePrintStart(ModelView):
'Countersamples Discharge Report'
__name__ = 'lims.countersample.discharge.print.start'
expiry_date_from = fields.Date('Expiry date from', required=True)
expiry_date_to = fields.Date('to', required=True)
date_from = fields.Date('Date from', required=True)
date_to = fields.Date('to', required=True)
class CountersampleDischargePrint(Wizard):
'Countersamples Discharge Report'
__name__ = 'lims.countersample.discharge.print'
start = StateView('lims.countersample.discharge.print.start',
'lims.lims_countersample_discharge_print_start_view_form', [
Button('Cancel', 'end', 'tryton-cancel'),
Button('Print', 'print_', 'tryton-print', default=True),
])
print_ = StateAction('lims.report_countersample_discharge')
def do_print_(self, action):
data = {
'expiry_date_from': self.start.expiry_date_from,
'expiry_date_to': self.start.expiry_date_to,
'date_from': self.start.date_from,
'date_to': self.start.date_to,
}
return action, data
def transition_print_(self):
return 'end'
class CountersampleDischargeReport(Report):
'Countersamples Discharge Report'
__name__ = 'lims.countersample.discharge.report'
@classmethod
def get_context(cls, records, data):
pool = Pool()
Fraction = pool.get('lims.fraction')
report_context = super(CountersampleDischargeReport,
cls).get_context(records, data)
report_context['company'] = report_context['user'].company
report_context['expiry_date_from'] = data['expiry_date_from']
report_context['expiry_date_to'] = data['expiry_date_to']
report_context['date_from'] = data['date_from']
report_context['date_to'] = data['date_to']
fractions = Fraction.search([
('discharge_date', '=', None),
('sample.date2', '>=', data['date_from']),
('sample.date2', '<=', data['date_to']),
('expiry_date', '>=', data['expiry_date_from']),
('expiry_date', '<=', data['expiry_date_to']),
], order=[('number', 'ASC')])
objects = {}
for fraction in fractions:
if fraction.current_location.id not in objects:
objects[fraction.current_location.id] = {
'location': fraction.current_location.rec_name,
'fractions': [],
}
objects[fraction.current_location.id]['fractions'].append({
'number': fraction.get_formated_number('pt-m-sy-sn-fn'),
'type': fraction.type.code,
'packages': '%s %s' % (fraction.packages_quantity or '',
fraction.package_type.description if fraction.package_type
else ''),
'entry_date': fraction.sample.date2,
'results_reports': cls.get_fraction_results_reports(
fraction.id),
'stp_number': (fraction.sample.entry.project.code
if fraction.sample.entry.project else ''),
'countersample_date': fraction.countersample_date or '',
'expiry_date': fraction.expiry_date or '',
'comments': (fraction.comments
if fraction.comments else ''),
})
ordered_objects = sorted(list(objects.values()),
key=lambda x: x['location'])
report_context['objects'] = ordered_objects
return report_context
@classmethod
def get_fraction_results_reports(cls, fraction_id):
cursor = Transaction().connection.cursor()
pool = Pool()
Service = pool.get('lims.service')
NotebookLine = pool.get('lims.notebook.line')
ResultsReport = pool.get('lims.results_report')
cursor.execute('SELECT DISTINCT(nl.results_report) '
'FROM "' + Service._table + '" s '
'INNER JOIN "' + NotebookLine._table + '" nl '
'ON s.id = nl.service '
'WHERE s.fraction = %s '
'AND nl.results_report IS NOT NULL',
(fraction_id,))
res = cursor.fetchall()
if not res:
return ''
result = []
for report_id in res:
results_report = ResultsReport(report_id[0])
result.append('%s (%s)' % (results_report.rec_name,
results_report.create_date2.strftime("%d/%m/%Y")))
return ' '.join(result)