735 lines
29 KiB
Python
735 lines
29 KiB
Python
# This file is part of lims_quality_control module for Tryton.
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# The COPYRIGHT file at the top level of this repository contains
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# the full copyright notices and license terms.
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from datetime import datetime
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from trytond.model import fields
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from trytond.pyson import Eval, Equal, Bool
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from trytond.transaction import Transaction
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from trytond.pool import Pool, PoolMeta
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from trytond.exceptions import UserError
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from trytond.i18n import gettext
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from trytond.modules.lims_interface.interface import FUNCTIONS
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from .function import custom_functions
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FUNCTIONS.update(custom_functions)
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class Configuration(metaclass=PoolMeta):
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__name__ = 'lims.configuration'
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qc_fraction_type = fields.Many2One('lims.fraction.type',
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'QC fraction type')
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class Method(metaclass=PoolMeta):
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__name__ = 'lims.lab.method'
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specification = fields.Text('Specification')
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class Analysis(metaclass=PoolMeta):
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__name__ = 'lims.analysis'
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quality_type = fields.Selection([
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('qualitative', 'Qualitative'),
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('quantitative', 'Quantitative'),
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], 'Quality Type', required=True)
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quality_possible_values = fields.One2Many('lims.quality.qualitative.value',
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'analysis', 'Possible Values',
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states={
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'invisible': ~Equal(Eval('quality_type'), 'qualitative'),
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'required': Equal(Eval('quality_type'), 'qualitative'),
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}, depends=['quality_type'])
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@staticmethod
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def default_quality_type():
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return 'quantitative'
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class Typification(metaclass=PoolMeta):
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__name__ = 'lims.typification'
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_history = True
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specification = fields.Text('Specification')
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quality = fields.Boolean('Quality')
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quality_template = fields.Many2One('lims.quality.template',
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'Quality Template')
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quality_type = fields.Function(fields.Selection([
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('qualitative', 'Qualitative'),
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('quantitative', 'Quantitative')
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], 'Quality Type', states={'invisible': True}),
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'on_change_with_quality_type')
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valid_value = fields.Many2One('lims.quality.qualitative.value',
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'Valid Value',
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states={
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'invisible': ~Equal(Eval('quality_type'), 'qualitative'),
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'required': Equal(Eval('quality_type'), 'qualitative'),
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},
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domain=[('id', 'in', Eval('valid_value_domain'))],
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depends=['valid_value_domain', 'quality_type'])
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valid_value_domain = fields.Function(fields.Many2Many(
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'lims.quality.qualitative.value',
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None, None, 'Valid Value domain',
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states={'invisible': True}), 'on_change_with_valid_value_domain')
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quality_test_report = fields.Boolean('Quality Test Report')
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quality_order = fields.Integer('Quality Order')
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quality_min = fields.Float('Min',
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digits=(16, Eval('limit_digits', 2)),
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states={
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'invisible': ~Equal(Eval('quality_type'), 'quantitative'),
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'required': Equal(Eval('quality_type'), 'quantitative'),
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}, depends=['quality_type', 'limit_digits'])
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quality_max = fields.Float('Max',
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digits=(16, Eval('limit_digits', 2)),
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states={
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'invisible': ~Equal(Eval('quality_type'), 'quantitative'),
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'required': Equal(Eval('quality_type'), 'quantitative'),
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}, depends=['quality_type', 'limit_digits'])
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interface = fields.Function(fields.Many2One('lims.interface',
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'Interface'), 'get_interface')
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@classmethod
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def __setup__(cls):
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super().__setup__()
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cls._sql_constraints = []
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cls.start_uom.states = {
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'invisible': ~Equal(Eval('quality_type'), 'quantitative'),
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'required': Equal(Eval('quality_type'), 'quantitative'),
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}
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cls.start_uom.depends = ['quality_type']
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cls.end_uom.states = {
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'invisible': ~Equal(Eval('quality_type'), 'quantitative'),
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}
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cls.end_uom.depends = ['quality_type']
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cls.initial_concentration.states = {
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'invisible': ~Equal(Eval('quality_type'), 'quantitative'),
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}
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cls.initial_concentration.depends = ['quality_type']
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cls.final_concentration.states = {
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'invisible': ~Equal(Eval('quality_type'), 'quantitative'),
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}
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cls.final_concentration.depends = ['quality_type']
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cls.limit_digits.states = {
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'invisible': ~Equal(Eval('quality_type'), 'quantitative'),
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}
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cls.limit_digits.depends = ['quality_type']
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cls.calc_decimals.states = {
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'invisible': ~Equal(Eval('quality_type'), 'quantitative'),
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}
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cls.calc_decimals.depends = ['quality_type']
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@classmethod
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def __register__(cls, module_name):
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super().__register__(module_name)
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table = cls.__table_handler__(module_name)
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table.drop_constraint('product_matrix_analysis_method_uniq')
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@fields.depends('analysis')
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def on_change_with_valid_value_domain(self, name=None):
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values = []
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if self.analysis and self.analysis.quality_possible_values:
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for value in self.analysis.quality_possible_values:
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values.append(value.id)
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return values
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@fields.depends('analysis')
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def on_change_with_quality_type(self, name=None):
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if self.analysis:
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return self.analysis.quality_type
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@fields.depends('method')
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def on_change_method(self):
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if self.method:
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self.specification = self.method.specification
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def check_default(self):
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if self.quality:
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return
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if self.by_default:
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typifications = self.search([
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('product_type', '=', self.product_type.id),
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('matrix', '=', self.matrix.id),
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('analysis', '=', self.analysis.id),
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('valid', '=', True),
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('by_default', '=', True),
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('id', '!=', self.id),
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])
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if typifications:
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raise UserError(gettext('lims.msg_default_typification'))
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else:
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if self.valid:
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typifications = self.search([
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('product_type', '=', self.product_type.id),
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('matrix', '=', self.matrix.id),
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('analysis', '=', self.analysis.id),
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('valid', '=', True),
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('id', '!=', self.id),
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])
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if not typifications:
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raise UserError(
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gettext('lims.msg_not_default_typification'))
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@classmethod
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def get_interface(cls, typifications, name):
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cursor = Transaction().connection.cursor()
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pool = Pool()
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Template = pool.get('lims.template.analysis_sheet')
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TemplateAnalysis = pool.get('lims.template.analysis_sheet.analysis')
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result = {}
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for t in typifications:
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cursor.execute('SELECT t.id '
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'FROM "' + Template._table + '" t '
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'INNER JOIN "' + TemplateAnalysis._table + '" ta '
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'ON t.id = ta.template '
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'WHERE t.active IS TRUE '
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'AND ta.analysis = %s '
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'AND ta.method = %s',
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(t.analysis.id, t.method.id))
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template_id = cursor.fetchone()
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result[t.id] = None
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if not template_id:
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cursor.execute('SELECT t.id '
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'FROM "' + Template._table + '" t '
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'INNER JOIN "' + TemplateAnalysis._table + '" ta '
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'ON t.id = ta.template '
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'WHERE t.active IS TRUE '
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'WHERE ta.analysis = %s '
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'AND ta.method IS NULL',
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(t.analysis.id,))
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template_id = cursor.fetchone()
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if template_id:
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template = Template(template_id[0])
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result[t.id] = template.interface.id
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return result
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@classmethod
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def create(cls, vlist):
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Template = Pool().get('lims.quality.template')
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vlist = [x.copy() for x in vlist]
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for values in vlist:
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if values.get('quality_template'):
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template, = Template.browse([values.get('quality_template')])
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values['product_type'] = template.product.product_type.id
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values['matrix'] = template.product.matrix.id
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return super().create(vlist)
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class NotebookLine(metaclass=PoolMeta):
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__name__ = 'lims.notebook.line'
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typification = fields.Many2One('lims.typification', 'Typification')
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quality_test = fields.Many2One('lims.quality.test', 'Quality Test',
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select=True)
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test_value = fields.Many2One('lims.quality.qualitative.value',
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'Test Value',
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states={
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'readonly': True,
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})
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qualitative_value = fields.Many2One('lims.quality.qualitative.value',
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'Qualitative Value',
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domain=[
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('analysis', '=', Eval('analysis')),
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], depends=['analysis'])
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success = fields.Function(fields.Boolean('Success',
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depends=['success_icon']), 'get_success')
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success_icon = fields.Function(fields.Char('Success Icon',
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depends=['success']), 'get_success_icon')
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quality_min = fields.Float('Min',
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digits=(16, Eval('decimals', 2)), depends=['decimals'])
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quality_max = fields.Float('Max',
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digits=(16, Eval('decimals', 2)), depends=['decimals'])
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quality_test_report = fields.Boolean('Quality Test Report')
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specification = fields.Text('Specification', readonly=True)
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test_result = fields.Function(fields.Char('Test Result'),
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'get_test_result')
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@classmethod
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def __setup__(cls):
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super().__setup__()
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cls.result.states = {
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'invisible': Bool(Eval('qualitative_value')),
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'readonly': Bool(Eval('accepted')),
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}
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cls.result.depends = ['accepted', 'qualitative_value']
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@staticmethod
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def default_quality_test_report():
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return True
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@classmethod
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def get_test_result(cls, lines, name):
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result = {}
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for line in lines:
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result[line.id] = line.get_formated_result()
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return result
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@classmethod
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def get_success(self, lines, name):
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res = {}
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for line in lines:
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res[line.id] = False
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if line.analysis.quality_type == 'quantitative':
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if line.result:
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value = float(line.result)
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quality_min = line.quality_min
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if not isinstance(quality_min, (int, float)):
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quality_min = float('-inf')
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quality_max = line.quality_max
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if not isinstance(quality_max, (int, float)):
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quality_max = float('inf')
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if (value >= quality_min and value <= quality_max):
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res[line.id] = True
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else:
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if line.qualitative_value == line.test_value:
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res[line.id] = True
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return res
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def get_success_icon(self, name):
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if not self.accepted:
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return 'lims-white'
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if self.success:
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return 'lims-green'
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return 'lims-red'
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@fields.depends('qualitative_value')
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def on_change_qualitative_value(self):
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if self.qualitative_value:
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self.literal_result = self.qualitative_value.name
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@classmethod
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def fields_view_get(cls, view_id=None, view_type='form'):
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pool = Pool()
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User = pool.get('res.user')
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Config = pool.get('lims.configuration')
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UiView = pool.get('ir.ui.view')
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result = super().fields_view_get(view_id=view_id, view_type=view_type)
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# All Notebook Lines view
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if view_id and UiView(view_id).name == 'notebook_line_all_list':
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return result
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notebook_view = User(Transaction().user).notebook_view
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if not notebook_view:
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notebook_view = Config(1).default_notebook_view
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if not notebook_view:
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return result
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if view_type == 'tree':
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xml = '<?xml version="1.0"?>\n' \
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'<tree editable="1">\n'
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fields = set()
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for column in notebook_view.columns:
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fields.add(column.field.name)
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attrs = []
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if column.field.name == 'analysis':
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attrs.append('icon="icon"')
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if column.field.name == 'success':
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attrs.append('icon="success_icon"')
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if column.field.name in ('acceptance_date', 'annulment_date'):
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attrs.append('widget="date"')
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xml += ('<field name="%s" %s/>\n'
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% (column.field.name, ' '.join(attrs)))
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for depend in getattr(cls, column.field.name).depends:
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fields.add(depend)
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for field in ('report_date', 'result', 'converted_result',
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'result_modifier', 'converted_result_modifier',
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'literal_result', 'backup', 'verification', 'uncertainty',
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'accepted', 'acceptance_date', 'end_date', 'report',
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'annulled', 'annulment_date', 'icon'):
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fields.add(field)
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xml += '</tree>'
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result['arch'] = xml
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result['fields'] = cls.fields_get(fields_names=list(fields))
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return result
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class EntryDetailAnalysis(metaclass=PoolMeta):
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__name__ = 'lims.entry.detail.analysis'
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@classmethod
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def create_notebook_lines(cls, details, fraction):
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cursor = Transaction().connection.cursor()
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pool = Pool()
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Typification = pool.get('lims.typification')
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Method = pool.get('lims.lab.method')
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WaitingTime = pool.get('lims.lab.method.results_waiting')
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AnalysisLaboratory = pool.get('lims.analysis-laboratory')
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ProductType = pool.get('lims.product.type')
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Notebook = pool.get('lims.notebook')
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Company = pool.get('company.company')
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def _str_value(val=None):
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return str(val) if val is not None else None
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lines_create = []
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template_id = None
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if Transaction().context.get('template'):
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template_id = Transaction().context.get('template')
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for detail in details:
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query = 'SELECT default_repetitions, ' \
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'initial_concentration, final_concentration, start_uom, ' \
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'end_uom, detection_limit, quantification_limit, ' \
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'lower_limit, upper_limit, calc_decimals, report, id ' \
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'FROM "' + Typification._table + '" ' \
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'WHERE product_type = %s ' \
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'AND matrix = %s ' \
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'AND analysis = %s ' \
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'AND method = %s ' \
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'AND valid'
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if template_id:
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query += ' AND quality_template = %s'
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cursor.execute(query,
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(fraction.product_type.id, fraction.matrix.id,
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detail.analysis.id, detail.method.id, template_id))
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else:
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cursor.execute(query,
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(fraction.product_type.id, fraction.matrix.id,
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detail.analysis.id, detail.method.id))
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typifications = cursor.fetchall()
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typification = (typifications[0] if len(typifications) == 1
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else None)
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if typification:
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repetitions = typification[0]
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initial_concentration = _str_value(typification[1])
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final_concentration = _str_value(typification[2])
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initial_unit = typification[3] or None
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final_unit = typification[4] or None
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detection_limit = _str_value(typification[5])
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quantification_limit = _str_value(typification[6])
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lower_limit = _str_value(typification[7])
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upper_limit = _str_value(typification[8])
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decimals = typification[9]
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report = typification[10]
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else:
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repetitions = 0
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initial_concentration = None
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final_concentration = None
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initial_unit = None
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final_unit = None
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detection_limit = None
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quantification_limit = None
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lower_limit = None
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upper_limit = None
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decimals = 2
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report = False
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results_estimated_waiting = None
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cursor.execute('SELECT results_estimated_waiting '
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'FROM "' + WaitingTime._table + '" '
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'WHERE method = %s '
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'AND party = %s',
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(detail.method.id, detail.party.id))
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res = cursor.fetchone()
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if res:
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results_estimated_waiting = res[0]
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else:
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cursor.execute('SELECT results_estimated_waiting '
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'FROM "' + Method._table + '" '
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'WHERE id = %s', (detail.method.id,))
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res = cursor.fetchone()
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if res:
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results_estimated_waiting = res[0]
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department = None
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cursor.execute('SELECT department '
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'FROM "' + AnalysisLaboratory._table + '" '
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'WHERE analysis = %s '
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'AND laboratory = %s',
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(detail.analysis.id, detail.laboratory.id))
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res = cursor.fetchone()
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if res and res[0]:
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department = res[0]
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else:
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cursor.execute('SELECT department '
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'FROM "' + ProductType._table + '" '
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'WHERE id = %s', (fraction.product_type.id,))
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res = cursor.fetchone()
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if res and res[0]:
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department = res[0]
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for i in range(0, repetitions + 1):
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notebook_line = {
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'analysis_detail': detail.id,
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'service': detail.service.id,
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'analysis': detail.analysis.id,
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'analysis_origin': detail.analysis_origin,
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'repetition': i,
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'laboratory': detail.laboratory.id,
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'method': detail.method.id,
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'device': detail.device.id if detail.device else None,
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'initial_concentration': initial_concentration,
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'final_concentration': final_concentration,
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'initial_unit': initial_unit,
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'final_unit': final_unit,
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'detection_limit': detection_limit,
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'quantification_limit': quantification_limit,
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'lower_limit': lower_limit,
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'upper_limit': upper_limit,
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'decimals': decimals,
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'report': report,
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'results_estimated_waiting': results_estimated_waiting,
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'department': department,
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}
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if template_id:
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quality_typification = Typification(typification[11])
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notebook_line['typification'] = quality_typification.id
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notebook_line['test_value'] = \
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quality_typification.valid_value.id \
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if quality_typification.valid_value else None
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notebook_line['quality_test'] = Transaction().context.get(
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'test')
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notebook_line['quality_min'] = \
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quality_typification.quality_min
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notebook_line['quality_max'] = \
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quality_typification.quality_max
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notebook_line['quality_test_report'] = \
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quality_typification.quality_test_report
|
|
notebook_line['specification'] = \
|
|
quality_typification.specification
|
|
lines_create.append(notebook_line)
|
|
|
|
if not lines_create:
|
|
companies = Company.search([])
|
|
if fraction.party.id not in [c.party.id for c in companies]:
|
|
raise UserError(gettext(
|
|
'lims.msg_not_services', fraction=fraction.rec_name))
|
|
|
|
with Transaction().set_user(0):
|
|
notebook = Notebook.search([
|
|
('fraction', '=', fraction.id),
|
|
])
|
|
Notebook.write(notebook, {
|
|
'lines': [('create', lines_create)],
|
|
})
|
|
|
|
|
|
class AnalysisSheet(metaclass=PoolMeta):
|
|
__name__ = 'lims.analysis_sheet'
|
|
|
|
@classmethod
|
|
def delete(cls, sheets):
|
|
raise UserError(gettext('lims_quality_control.delete_sheet'))
|
|
|
|
|
|
class ResultReport(metaclass=PoolMeta):
|
|
__name__ = 'lims.result_report'
|
|
|
|
@classmethod
|
|
def get_reference(cls, range_type, notebook_line, language,
|
|
report_section):
|
|
res = super().get_reference(range_type, notebook_line, language,
|
|
report_section)
|
|
if res:
|
|
return res
|
|
|
|
res = ''
|
|
if notebook_line.quality_min:
|
|
with Transaction().set_context(language=language):
|
|
resf = float(notebook_line.quality_min)
|
|
resd = abs(resf) - abs(int(resf))
|
|
if resd > 0:
|
|
res1 = str(round(notebook_line.quality_min, 2))
|
|
else:
|
|
res1 = str(int(notebook_line.quality_min))
|
|
res = gettext('lims.msg_caa_min', min=res1)
|
|
|
|
if notebook_line.quality_max:
|
|
if res:
|
|
res += ' - '
|
|
with Transaction().set_context(language=language):
|
|
resf = float(notebook_line.quality_max)
|
|
resd = abs(resf) - abs(int(resf))
|
|
if resd > 0:
|
|
res1 = str(round(notebook_line.quality_max, 2))
|
|
else:
|
|
res1 = str(int(notebook_line.quality_max))
|
|
|
|
res += gettext('lims.msg_caa_max', max=res1)
|
|
return res
|
|
|
|
|
|
class NotebookLoadResultsManualLine(metaclass=PoolMeta):
|
|
__name__ = 'lims.notebook.load_results_manual.line'
|
|
|
|
qualitative_value = fields.Many2One('lims.quality.qualitative.value',
|
|
'Qualitative Value',
|
|
domain=[
|
|
('analysis', '=', Eval('analysis')),
|
|
], depends=['analysis'])
|
|
analysis = fields.Function(fields.Many2One('lims.analysis', 'Analysis'),
|
|
'get_analysis')
|
|
|
|
def get_analysis(self, name):
|
|
return self.line.analysis.id if self.line else None
|
|
|
|
@fields.depends('result', 'literal_result', 'result_modifier', 'end_date',
|
|
'qualitative_value')
|
|
def on_change_with_end_date(self):
|
|
pool = Pool()
|
|
Date = pool.get('ir.date')
|
|
if self.end_date:
|
|
return self.end_date
|
|
if (self.result or self.literal_result or self.qualitative_value or
|
|
self.result_modifier not in ('eq', 'low')):
|
|
return Date.today()
|
|
return None
|
|
|
|
@fields.depends('qualitative_value')
|
|
def on_change_qualitative_value(self):
|
|
if self.qualitative_value:
|
|
self.literal_result = self.qualitative_value.name
|
|
|
|
|
|
class NotebookLoadResultsManual(metaclass=PoolMeta):
|
|
__name__ = 'lims.notebook.load_results_manual'
|
|
|
|
def transition_confirm_(self):
|
|
pool = Pool()
|
|
NotebookLoadResultsManualLine = pool.get(
|
|
'lims.notebook.load_results_manual.line')
|
|
NotebookLine = pool.get('lims.notebook.line')
|
|
LabProfessionalMethod = pool.get('lims.lab.professional.method')
|
|
LabProfessionalMethodRequalification = pool.get(
|
|
'lims.lab.professional.method.requalification')
|
|
Date = pool.get('ir.date')
|
|
|
|
# Write Results to Notebook lines
|
|
actions = NotebookLoadResultsManualLine.search([
|
|
('session_id', '=', self._session_id),
|
|
])
|
|
|
|
for data in actions:
|
|
notebook_line = NotebookLine(data.line.id)
|
|
if not notebook_line:
|
|
continue
|
|
notebook_line_write = {
|
|
'result': data.result,
|
|
'qualitative_value': data.qualitative_value,
|
|
'result_modifier': data.result_modifier,
|
|
'end_date': data.end_date,
|
|
'chromatogram': data.chromatogram,
|
|
'initial_unit': (data.initial_unit.id if
|
|
data.initial_unit else None),
|
|
'comments': data.comments,
|
|
'literal_result': data.literal_result,
|
|
'converted_result': None,
|
|
'converted_result_modifier': 'eq',
|
|
'backup': None,
|
|
'verification': None,
|
|
'uncertainty': None,
|
|
}
|
|
if data.result_modifier == 'na':
|
|
notebook_line_write['annulled'] = True
|
|
notebook_line_write['annulment_date'] = datetime.now()
|
|
notebook_line_write['report'] = False
|
|
professionals = [{'professional': self.result.professional.id}]
|
|
notebook_line_write['professionals'] = (
|
|
[('delete', [p.id for p in notebook_line.professionals])] +
|
|
[('create', professionals)])
|
|
NotebookLine.write([notebook_line], notebook_line_write)
|
|
|
|
# Write Supervisors to Notebook lines
|
|
supervisor_lines = {}
|
|
if hasattr(self.sit2, 'supervisor'):
|
|
supervisor_lines[self.sit2.supervisor.id] = [
|
|
l.id for l in self.sit2.lines]
|
|
for prof_id, lines in supervisor_lines.items():
|
|
notebook_lines = NotebookLine.search([
|
|
('id', 'in', lines),
|
|
])
|
|
if notebook_lines:
|
|
professionals = [{'professional': prof_id}]
|
|
notebook_line_write = {
|
|
'professionals': [('create', professionals)],
|
|
}
|
|
NotebookLine.write(notebook_lines, notebook_line_write)
|
|
|
|
# Write the execution of method
|
|
all_prof = {}
|
|
key = (self.result.professional.id, self.result.method.id)
|
|
all_prof[key] = []
|
|
if hasattr(self.sit2, 'supervisor'):
|
|
for detail in self.sit2.lines:
|
|
key = (self.sit2.supervisor.id, detail.method.id)
|
|
if key not in all_prof:
|
|
all_prof[key] = []
|
|
key = (self.result.professional.id, detail.method.id)
|
|
if self.sit2.supervisor.id not in all_prof[key]:
|
|
all_prof[key].append(self.sit2.supervisor.id)
|
|
|
|
today = Date.today()
|
|
for key, sup in all_prof.items():
|
|
professional_method, = LabProfessionalMethod.search([
|
|
('professional', '=', key[0]),
|
|
('method', '=', key[1]),
|
|
('type', '=', 'analytical'),
|
|
])
|
|
if professional_method.state == 'training':
|
|
history = LabProfessionalMethodRequalification.search([
|
|
('professional_method', '=', professional_method.id),
|
|
('type', '=', 'training'),
|
|
])
|
|
if history:
|
|
prev_supervisors = [s.supervisor.id for s in
|
|
history[0].supervisors]
|
|
supervisors = [{'supervisor': s} for s in sup
|
|
if s not in prev_supervisors]
|
|
LabProfessionalMethodRequalification.write(history, {
|
|
'last_execution_date': today,
|
|
'supervisors': [('create', supervisors)],
|
|
})
|
|
else:
|
|
supervisors = [{'supervisor': s} for s in sup]
|
|
to_create = [{
|
|
'professional_method': professional_method.id,
|
|
'type': 'training',
|
|
'date': today,
|
|
'last_execution_date': today,
|
|
'supervisors': [('create', supervisors)],
|
|
}]
|
|
LabProfessionalMethodRequalification.create(to_create)
|
|
|
|
elif professional_method.state == 'qualified':
|
|
history = LabProfessionalMethodRequalification.search([
|
|
('professional_method', '=', professional_method.id),
|
|
('type', '=', 'qualification'),
|
|
])
|
|
if history:
|
|
LabProfessionalMethodRequalification.write(history, {
|
|
'last_execution_date': today,
|
|
})
|
|
else:
|
|
to_create = [{
|
|
'professional_method': professional_method.id,
|
|
'type': 'qualification',
|
|
'date': today,
|
|
'last_execution_date': today,
|
|
}]
|
|
LabProfessionalMethodRequalification.create(to_create)
|
|
|
|
else:
|
|
history = LabProfessionalMethodRequalification.search([
|
|
('professional_method', '=', professional_method.id),
|
|
('type', '=', 'requalification'),
|
|
])
|
|
if history:
|
|
LabProfessionalMethodRequalification.write(history, {
|
|
'last_execution_date': today,
|
|
})
|
|
else:
|
|
to_create = [{
|
|
'professional_method': professional_method.id,
|
|
'type': 'requalification',
|
|
'date': today,
|
|
'last_execution_date': today,
|
|
}]
|
|
LabProfessionalMethodRequalification.create(to_create)
|
|
|
|
return 'end'
|