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jupyter-desktop-server-golang
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Use insight 5.5.7-SNAPSHOT for websocket support

This commit is contained in:
Simon Li 2019-10-25 23:47:10 +01:00
parent f90271a513
commit 953b8e7139
3 changed files with 14 additions and 9 deletions
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6
README.md
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@ -1,4 +1,4 @@
# Jupyter OMERO client Desktop
# Jupyter OMERO/Fiji/Napari Desktop
[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/manics/jupyter-omeroanalysis-desktop/napari-binder?filepath=napari.ipynb)
@ -6,9 +6,9 @@ Run [OMERO clients](https://www.openmicroscopy.org/omero/downloads/) and [Napari
This is based on https://github.com/ryanlovett/nbnovnc
Either [run on mybinder.org](https://mybinder.org/v2/gh/manics/jupyter-omeroanalysis-desktop/napari-binder?filepath=napari.ipynb) or build locally with [repo2docker](https://repo2docker.readthedocs.io/):
```
docker build -t jupyter-omeroanalysis-desktop .
docker run -it --rm -p 8888:8888 jupyter-omeroanalysis-desktop
repo2docker .
```
Open the displayed URL, then go to `/desktop` e.g. http://localhost:8888/desktop and if you're lucky you'll see a Linux desktop with icons for OMERO.insight and FIJI.

11
binder/postBuild
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@ -30,25 +30,30 @@ chmod +x xstartup
# Desktop applications
# Fiji and OMERO insight
OMERO_INSIGHT_VERSION=5.5.6
#OMERO_INSIGHT_VERSION=5.5.6
#OMERO_INSIGHT_URL_BASE=https://github.com/ome/omero-insight/releases/download/v$OMERO_INSIGHT_VERSION/
OMERO_INSIGHT_VERSION=5.5.7-SNAPSHOT
OMERO_INSIGHT_URL_BASE=https://users.openmicroscopy.org.uk/~spli/insight
wget -q https://downloads.imagej.net/fiji/latest/fiji-nojre.zip
unzip -q fiji-nojre.zip
rm fiji-nojre.zip
pushd Fiji.app/plugins
wget -q https://github.com/ome/omero-insight/releases/download/v5.5.6/OMERO.imagej-$OMERO_INSIGHT_VERSION.zip
wget -q $OMERO_INSIGHT_URL_BASE/OMERO.imagej-$OMERO_INSIGHT_VERSION.zip
unzip -q OMERO.imagej-$OMERO_INSIGHT_VERSION.zip
rm OMERO.imagej-$OMERO_INSIGHT_VERSION.zip
popd
wget -q https://github.com/ome/omero-insight/releases/download/v5.5.6/OMERO.insight-$OMERO_INSIGHT_VERSION.zip
wget -q $OMERO_INSIGHT_URL_BASE/OMERO.insight-$OMERO_INSIGHT_VERSION.zip
unzip -q OMERO.insight-$OMERO_INSIGHT_VERSION.zip
rm OMERO.insight-$OMERO_INSIGHT_VERSION.zip
pushd OMERO.insight-$OMERO_INSIGHT_VERSION && \
wget -q https://www.openmicroscopy.org/img/logos/omero-logomark.svg
popd
ln -s OMERO.insight-$OMERO_INSIGHT_VERSION OMERO.insight
mkdir Desktop
cp $REPO_DIR/jupyter_desktop/share/*.desktop Desktop
chmod +x Desktop/*.desktop

6
jupyter_desktop/share/OMERO.insight.desktop
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@ -6,8 +6,8 @@ X-GNOME-FullName=OMERO.insight
Comment=OMERO desktop client
Type=Application
Categories=Education;Science;ImageProcessing;
Exec=/srv/conda/vnc/OMERO.insight-5.5.6/bin/omero-insight
TryExec=/srv/conda/vnc/OMERO.insight-5.5.6/bin/omero-insight
Exec=/srv/conda/vnc/OMERO.insight/bin/omero-insight
TryExec=/srv/conda/vnc/OMERO.insight/bin/omero-insight
Terminal=false
StartupNotify=true
Icon=/srv/conda/vnc/OMERO.insight-5.5.6/omero-logomark.svg
Icon=/srv/conda/vnc/OMERO.insight/omero-logomark.svg