vault backup: 2023-04-10 18:49:41

.obsidian/community-plugins.json

@@ -8,5 +8,7 @@
   "obsidian-style-settings",
   "obsidian-git",
   "obsidian-linter",
-  "table-editor-obsidian"
+  "table-editor-obsidian",
+  "obsidian42-brat",
+  "obsidian-sidekick"
 ]

.obsidian/plugins/obsidian-git/manifest.json

@@ -5,5 +5,5 @@
     "isDesktopOnly": false,
     "fundingUrl": "https://ko-fi.com/vinzent",
     "js": "main.js",
-    "version": "2.19.0"
+    "version": "2.19.1"
 }

.obsidian/plugins/obsidian-git/styles.css

@@ -55,7 +55,9 @@
     display: flex;
     align-items: center;
     justify-content: center;
+    width: 11px;
 }
+
 .git-tools .type[data-type="M"] {
     color: orange;
 }

.obsidian/plugins/obsidian-linter/data.json

@@ -3,6 +3,7 @@
   "lintOnSave": false,
   "recordLintOnSaveLogs": false,
   "displayChanged": true,
+  "settingsConvertedToConfigKeyValues": true,
   "foldersToIgnore": [],
   "linterLocale": "system-default",
   "logLevel": 4,

.obsidian/plugins/obsidian-linter/manifest.json

@@ -1,7 +1,7 @@
 {
   "id": "obsidian-linter",
   "name": "Linter",
-  "version": "1.10.3",
+  "version": "1.12.0",
   "minAppVersion": "0.15.6",
   "description": "Formats and styles your notes. It can be used to format YAML tags, aliases, arrays, and metadata; footnotes; headings; spacing; math blocks; regular markdown contents like list, italics, and bold styles; and more with the use of custom rule options as well.",
   "author": "Victor Tao",

.obsidian/plugins/obsidian-sidekick/manifest.json

@@ -0,0 +1 @@
+{"id":"obsidian-sidekick","name":"Sidekick","description":"A companion to identify hidden connections that match your tags and pages","version":"1.5.1","minAppVersion":"0.13.8","author":"Hady Osman","authorUrl":"https://hady.geek.nz","isDesktopOnly":false}

.obsidian/plugins/obsidian42-brat/data.json

@@ -0,0 +1,15 @@
+{
+  "pluginList": [
+    "hadynz/obsidian-sidekick"
+  ],
+  "pluginSubListFrozenVersion": [],
+  "themesList": [],
+  "updateAtStartup": true,
+  "updateThemesAtStartup": false,
+  "ribbonIconEnabled": true,
+  "loggingEnabled": false,
+  "loggingPath": "BRAT-log",
+  "loggingVerboseEnabled": false,
+  "debuggingMode": true,
+  "notificationsEnabled": true
+}

.obsidian/plugins/obsidian42-brat/manifest.json

@@ -0,0 +1,14 @@
+{
+	"id": "obsidian42-brat",
+	"name": "Obsidian42 - BRAT",
+	"version": "0.7.0",
+	"minAppVersion": "1.1.16",
+	"description": "Easily install a beta version of a plugin for testing.",
+	"author": "TfTHacker",
+	"authorUrl": "https://github.com/TfTHacker/obsidian42-brat",
+	"isDesktopOnly": false,
+	"fundingUrl": {
+        "Buy Me a Coffee": "https://bit.ly/o42-kofi",
+        "Medium membership": "https://bit.ly/o42-medium"
+    }
+}

.obsidian/plugins/obsidian42-brat/styles.css

@@ -0,0 +1,3 @@
+.brat-modal .modal-button-container {
+    margin-top: 5px !important;
+} 

.obsidian/plugins/various-complements/data.json

@@ -262,8 +262,8 @@
     "protein": {
       "protein": {
         "customDictionary": {
-          "count": 1,
-          "lastUpdated": 1679638816567
+          "count": 2,
+          "lastUpdated": 1681114819602
         }
       }
     },
@@ -318,8 +318,8 @@
           "lastUpdated": 1679661598817
         },
         "currentVault": {
-          "count": 1,
-          "lastUpdated": 1680326782791
+          "count": 4,
+          "lastUpdated": 1681115133598
         }
       }
     },
@@ -586,8 +586,8 @@
     "nucleus": {
       "nucleus": {
         "currentFile": {
-          "count": 1,
-          "lastUpdated": 1680166798517
+          "count": 3,
+          "lastUpdated": 1680519373316
         }
       }
     },
@@ -678,8 +678,8 @@
     "membrane": {
       "membrane": {
         "currentFile": {
-          "count": 2,
-          "lastUpdated": 1680325384040
+          "count": 4,
+          "lastUpdated": 1680519268543
         }
       }
     },
@@ -746,6 +746,158 @@
           "lastUpdated": 1680326937082
         }
       }
+    },
+    "Nucleus": {
+      "Nucleus": {
+        "currentFile": {
+          "count": 2,
+          "lastUpdated": 1680519180670
+        }
+      }
+    },
+    "separated": {
+      "separated": {
+        "customDictionary": {
+          "count": 1,
+          "lastUpdated": 1680519189275
+        }
+      }
+    },
+    "cytoplasm": {
+      "cytoplasm": {
+        "currentFile": {
+          "count": 2,
+          "lastUpdated": 1681114963062
+        }
+      }
+    },
+    "envelope": {
+      "envelope": {
+        "customDictionary": {
+          "count": 4,
+          "lastUpdated": 1681130269839
+        }
+      }
+    },
+    "nuclear": {
+      "nuclear": {
+        "customDictionary": {
+          "count": 1,
+          "lastUpdated": 1680519272328
+        }
+      }
+    },
+    "similar": {
+      "similar": {
+        "customDictionary": {
+          "count": 1,
+          "lastUpdated": 1680519276903
+        }
+      }
+    },
+    "component": {
+      "component": {
+        "customDictionary": {
+          "count": 1,
+          "lastUpdated": 1680519563727
+        }
+      }
+    },
+    "ribosomes": {
+      "ribosomes": {
+        "currentFile": {
+          "count": 6,
+          "lastUpdated": 1681115175354
+        }
+      }
+    },
+    "nucleolus": {
+      "nucleolus": {
+        "currentFile": {
+          "count": 1,
+          "lastUpdated": 1680519579959
+        }
+      }
+    },
+    "Ribosomes": {
+      "Ribosomes": {
+        "currentFile": {
+          "count": 2,
+          "lastUpdated": 1681114814778
+        }
+      }
+    },
+    "responsible": {
+      "responsible": {
+        "customDictionary": {
+          "count": 1,
+          "lastUpdated": 1681114817624
+        }
+      }
+    },
+    "synthesis": {
+      "synthesis": {
+        "customDictionary": {
+          "count": 2,
+          "lastUpdated": 1681130997138
+        }
+      }
+    },
+    "Endoplasmic": {
+      "Endoplasmic": {
+        "currentFile": {
+          "count": 4,
+          "lastUpdated": 1681130918779
+        }
+      }
+    },
+    "Reticulum": {
+      "Reticulum": {
+        "currentFile": {
+          "count": 5,
+          "lastUpdated": 1681130920555
+        }
+      }
+    },
+    "Apparatus": {
+      "Apparatus": {
+        "customDictionary": {
+          "count": 1,
+          "lastUpdated": 1681132184971
+        }
+      }
+    },
+    "receives": {
+      "receives": {
+        "customDictionary": {
+          "count": 1,
+          "lastUpdated": 1681132206803
+        }
+      }
+    },
+    "apparatus": {
+      "apparatus": {
+        "customDictionary": {
+          "count": 1,
+          "lastUpdated": 1681132259993
+        }
+      }
+    },
+    "Lysosomes": {
+      "Lysosomes": {
+        "currentFile": {
+          "count": 1,
+          "lastUpdated": 1681132525843
+        }
+      }
+    },
+    "Vacuole": {
+      "Vacuole": {
+        "currentFile": {
+          "count": 1,
+          "lastUpdated": 1681132708866
+        }
+      }
     }
   }
 }

.obsidian/workspace.json

@@ -4,11 +4,11 @@
     "type": "split",
     "children": [
       {
-        "id": "7c01b1c8c388df81",
+        "id": "70db67191ac8b461",
         "type": "tabs",
         "children": [
           {
-            "id": "07d69751ab8a1456",
+            "id": "77d537e8d092f8e4",
             "type": "leaf",
             "state": {
               "type": "markdown",
@@ -18,28 +18,16 @@
                 "source": true
               }
             },
-            "group": "234dd4db4dc6ab5e"
-          },
-          {
-            "id": "a8e85ecf84bd3b62",
-            "type": "leaf",
-            "state": {
-              "type": "markdown",
-              "state": {
-                "file": "1_The Molecules of Life/2_Large Biological Molecules.md",
-                "mode": "source",
-                "source": true
-              }
-            }
+            "group": "58d541e08b295c45"
           }
         ]
       },
       {
-        "id": "7af5981537763362",
+        "id": "8574f23a5872ce4f",
         "type": "tabs",
         "children": [
           {
-            "id": "bae6fd2f22233ffc",
+            "id": "1a01f24fd6e0fa11",
             "type": "leaf",
             "state": {
               "type": "markdown",
@@ -49,7 +37,7 @@
                 "source": true
               }
             },
-            "group": "234dd4db4dc6ab5e"
+            "group": "58d541e08b295c45"
           }
         ]
       }
@@ -80,7 +68,7 @@
             "state": {
               "type": "search",
               "state": {
-                "query": "extra",
+                "query": "",
                 "matchingCase": false,
                 "explainSearch": false,
                 "collapseAll": false,
@@ -174,11 +162,11 @@
       }
     ],
     "direction": "horizontal",
-    "width": 200,
-    "collapsed": true
+    "width": 200
   },
   "left-ribbon": {
     "hiddenItems": {
+      "obsidian42-brat:BRAT": false,
       "switcher:Open quick switcher": false,
       "graph:Open graph view": false,
       "canvas:Create new canvas": false,
@@ -188,15 +176,19 @@
       "table-editor-obsidian:Advanced Tables Toolbar": false
     }
   },
-  "active": "ccd75b8978daeee7",
+  "active": "19a1304cd8bad256",
   "lastOpenFiles": [
-    "1_The Molecules of Life/2_Large Biological Molecules.md",
+    "2_A Tour of the Cell/definitions/organelles.md",
     "2_A Tour of the Cell/2_An Overview of Eukaryotic Cells.md",
+    "1_The Molecules of Life/2_Large Biological Molecules.md",
+    "2_A Tour of the Cell/images/ER_manufacture.png",
+    "2_A Tour of the Cell/images/ER.png",
     "2_A Tour of the Cell/1_Two Categories of the Cell.md",
+    "2_A Tour of the Cell/Untitled.md",
+    "2_A Tour of the Cell/images/nucleus.png",
     "2_A Tour of the Cell/images/fluid_mosaic_model_of_membrane.png",
     "2_A Tour of the Cell/images/phospholipid bilayer.png",
     "2_A Tour of the Cell/images/prokaryotic_cell.png",
-    "2_A Tour of the Cell/definitions/organelles.md",
     "1_The Molecules of Life/1_Carbon Chemistry.md",
     "2_A Tour of the Cell/prokaryotes.md",
     "2_A Tour of the Cell/images",
@@ -211,11 +203,8 @@
     "1_The Molecules of Life/images/dna_double_helix.png",
     "1_The Molecules of Life/images/polynucleotide.png",
     "1_The Molecules of Life/images/dna_nucleotide.png",
-    "1_The Molecules of Life/images/alanine.jpg",
     "The Molecules of Life/images/alanine",
     "1_The Molecules of Life/definitions/atherosclerosis.md",
-    "1_The Molecules of Life/images/amino_acids.png",
-    "1_The Molecules of Life/images/steroids.png",
     "1_The Molecules of Life/images",
     "1_The Molecules of Life/definitions/isomers.md",
     "The Molecules of Life/_How to study?.md",

1_The Molecules of Life/2_Large Biological Molecules.md

@@ -121,6 +121,8 @@ Saturated fats can be converted to unsaturated fats by adding  hydrogen by a pro
 
 ### Steriods
 
+^717f50
+
 All steriods have a carbon skeleton with four fused rings.
 
 ![[steroids.png]]

2_A Tour of the Cell/1_Two Categories of the Cell.md

@@ -49,3 +49,6 @@ Prokaryotes can also have **pili** which can also attach to surfaces.
 
 ----
 
+
+
+cytosol

2_A Tour of the Cell/2_An Overview of Eukaryotic Cells.md

@@ -1,4 +1,4 @@
-The region of the cell outside the nucleus and within the plasma membrane is called the **cytoplasm**. The **cytoplasm**  of a eukaryotic cell consists of various **organelles** [[1_Two Categories of the Cell#^772abb | organelles ]] suspended in the liquid [[1_Two Categories of the Cell#^558751 | cytosol]].
+The region of the cell outside the nucleus and within the plasma membrane is called the **cytoplasm**. The **cytoplasm**  of a eukaryotic cell consists of various **organelles** [[1_Two Categories of the Cell#^772abb | organelles ]] suspended in the liquid [[1_Two Categories of the Cell#^558751 | cytosol]]. ^9a0d7a
 
 ## Difference between plant cells and animal cells 
 
@@ -9,7 +9,7 @@ plant cells have
 
 animal cells have 
 - centrioles
-- lysosomes
+- [[2_An Overview of Eukaryotic Cells#^a46be4 | lysosomes]]
 
 # Membrane Structure 
 
@@ -47,4 +47,84 @@ Most animal cells secrete a sticky coat called the **extracellular matrix**.
 
 **Fibers** made of the protein **collagen** (also found in skin, cartilage, bones, and tendons) **hold cells together in tissues** and can also have protective and supportive functions. 
 
-In addition, the surfaces of most animal cells contain cell junctions, structures that connect cells together into tissues, allowing the cells to function in a coordinated way.
+In addition, the surfaces of most animal cells contain cell junctions, structures that connect cells together into tissues, allowing the cells to function in a coordinated way.
+
+# Nucleus 
+
+^9fbdc1
+
+The **nucleus** is separated from the [[#^9a0d7a | cytoplasm]] by a double membrane called the **nuclear envelope**. Each membrane of the nuclear envelope is similar to the [[#^339bad | structure of the plasma membrane]]. ^1b64df
+
+![[nucleus.png]]
+
+Pores in the envelope allow certain material to pass between the nucleus and the  [[#^9a0d7a | cytoplasm]].
+
+ Within the nucleus, long DNA molecules and associated proteins form fibers called **chromatin**. Each long **chromatin fiber** constitutes one **chromosome**.
+
+ The **nucleolus** ,a prominent ­structure within the **nucleus**, **is the site where the ­components of ribosomes are made**.
+
+>[!Question]- Where are components of ribosomes made?
+> In the nucleolus 
+
+# Ribosomes 
+
+^95ba1b
+
+>[!Question] What is the function of ribosomes?
+>Ribosomes are **responsible for protein synthesis**.
+
+>[!Question] Where are the ribosomes made?
+In eukaryotic cells, the components of ribosomes are made in the [[#^9fbdc1 | nucleus]] and then transported through the pores of the [[2_An Overview of Eukaryotic Cells#^1b64df | nuclear envelope]] into the [[2_An Overview of Eukaryotic Cells#^9a0d7a | cytoplasm]]. In the cytoplasm the ribosomes begin their work.
+
+>[!Question] Where are ribosomes found in the cell?
+Some ribosomes are suspended in the [[2_An Overview of Eukaryotic Cells#^9a0d7a | cytosol]], making proteins that remain within the fluid of the cell. Other ribosomes are attached to the outside of the nucleus or an organelle called the endoplasmic reticulum, making proteins that are incorporated into membranes or secreted by the cell.
+
+Free and bound ribosomes are structurally identical, and ribosomes can switch locations, moving between the endoplasmic reticulum and the [[2_An Overview of Eukaryotic Cells#^9a0d7a | cytosol]].
+
+# The Endomembrane System: Manufacturing and Distributing Cellular Products
+
+## The Endoplasmic Reticulum 
+
+It is connected to the [[2_An Overview of Eukaryotic Cells#^1b64df | nuclear envelope]].
+
+![[ER.png]]
+
+There are two components that make up the Endoplasmic Reticulum(ER):
+
+```mermaid
+flowchart TD;
+ER --> Rough_ER
+ER --> Smooth_ER
+```
+
+### Rough Endoplasmic Reticulum 
+
+The “rough” in rough ER refers to ribosomes that stud the outside of its membrane. **One of the functions of rough ER is to make more membrane.** Phospholipids made by enzymes of the rough ER are inserted into the ER membrane. In this way, the ER membrane grows, and portions of it can bubble off and be transferred to other parts of the cell.
+
+![[ER_manufacture.png]] ^429964
+
+### Smooth Endoplasmic Reticulum 
+
+The “smooth” in smooth ER refers to the fact that this organelle lacks the [[2_An Overview of Eukaryotic Cells#^95ba1b | ribosomes]] that populate the ­surface of rough ER.
+
+Function of Smooth ER is the synthesis of lipids, including [[2_Large Biological Molecules#^717f50 | steroids]].
+
+## Golgi Apparatus 
+
+It receives, refines, stores and distributes chemical products of the cell. 
+
+Products made in the ER reach the golgi apparatus in [[2_An Overview of Eukaryotic Cells#^429964 | transport vesicles]].
+
+- One side of a Golgi stack serves as a receiving dock for vesicles from the ER.
+- Proteins within a vesicle are usually modified by enzymes ­during their transit from the receiving to the shipping side of the Golgi apparatus.
+- The shipping side of a Golgi stack is a depot from which finished ­products can be carried in transport vesicles to other [[organelles]] or to the plasma membrane.
+
+­Vesicles that bind with the plasma membrane transfer proteins to it or secrete ­finished products to the outside of the cell.
+
+## Lysosomes 
+
+#TODO 
+
+## Vacuoles
+
+#TODO