diff --git a/METABOLITOS BEBESANO.docx b/METABOLITOS BEBESANO.docx new file mode 100644 index 0000000..7420a5c Binary files /dev/null and b/METABOLITOS BEBESANO.docx differ diff --git a/data/final_merge_2.csv b/data/final_merge_2.csv index 462bd9d..17b56df 100644 --- a/data/final_merge_2.csv +++ b/data/final_merge_2.csv @@ -1,140 +1,139 @@ 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b/results/indResults/DHPAA_plasm_post/df_pred-test_lgbm_DHPAA_plasm_post_DHPAA_plasm_post.csv @@ -0,0 +1,29 @@ +;DHPAA_plasm_post_pred;DHPAA_plasm_post +135;0.38570642008972367;0.39084425403225803 +66;0.38570642008972367;0.83375 +31;0.3858401853748112;0.3921875 +118;0.38581681869139256;0.5496875 +42;0.38570642008972367;0.39084425403225803 +12;0.38583078491979717;0.491875 +51;0.3858401853748112;0.1484375 +68;0.38557492380377706;0.1628125 +126;0.3857297867731423;0.9365625 +55;0.38557492380377706;0.3015625 +112;0.3857297867731423;0.258125 +130;0.38557492380377706;0.1328125 +80;0.38570642008972367;0.3384375 +19;0.38581681869139256;0.226875 +86;0.38570642008972367;0.3890625 +69;0.38594118352146606;0.9571875 +11;0.38557492380377706;0.5 +27;0.38583078491979717;0.30375 +134;0.38570642008972367;0.39084425403225803 +109;0.38570642008972367;0.616875 +36;0.38581681869139256;0.2959375 +117;0.38583078491979717;0.435 +78;0.38581681869139256;0.36375 +4;0.3857297867731423;0.0634375 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index 0000000..9dab5ee --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/E.S_urine_postmetrics_E.S_urine_post_rf_E.S_urine_post.csv @@ -0,0 +1,8 @@ +index;Value +target;E.S_urine_post +method;rf_E.S_urine_post +r2;-0.009489259097353209 +mae;0.10541646782668158 +mse;0.02348975556977932 +mape;3.6455650801165653 +ev;-0.002081428746150804 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/E.S_urine_postmetrics_E.S_urine_post_xgb_E.S_urine_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/E.S_urine_postmetrics_E.S_urine_post_xgb_E.S_urine_post.csv new file mode 100644 index 0000000..aff9a12 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/E.S_urine_postmetrics_E.S_urine_post_xgb_E.S_urine_post.csv @@ -0,0 +1,8 @@ +index;Value +target;E.S_urine_post +method;xgb_E.S_urine_post +r2;-0.046774445006730225 +mae;0.11303344677957597 +mse;0.024357342713963667 +mape;3.8178650142809287 +ev;-0.022332128638681947 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_lgbm_EG.1_post_EG.1_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_lgbm_EG.1_post_EG.1_post.csv index a236ca6..8bdec2f 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_lgbm_EG.1_post_EG.1_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_lgbm_EG.1_post_EG.1_post.csv @@ -1,29 +1,29 @@ ;EG.1_post_pred;EG.1_post -135;0.022675686649682048;0.0016874701131654 -66;0.01796188157813017;0.0600860460844911 -31;0.02612742378436689;0.0010671456495164 -118;0.014612614441981349;0.0312217400456765 -42;0.027920953029156727;0.0838593433196807 -12;0.022455280469286115;0.0012942321331926 -51;0.040553057175368536;0.0220433233834553 -68;0.010823394990352503;0.0030372136890794 -126;0.024058431804316296;0.0755349436359313 -55;0.03976279014515836;0.004404067624328 -112;0.03690877010160794;0.0300770518458321 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diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_rf_EG.1_post_EG.1_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_rf_EG.1_post_EG.1_post.csv index db9c28c..05ecd0c 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_rf_EG.1_post_EG.1_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_rf_EG.1_post_EG.1_post.csv @@ -1,29 +1,29 @@ ;EG.1_post_pred;EG.1_post -135;0.02242109947101543;0.0016874701131654 -66;0.025871035167534247;0.0600860460844911 -31;0.02160907863138819;0.0010671456495164 -118;0.023957239410314597;0.0312217400456765 -42;0.028041660734507996;0.0838593433196807 -12;0.051491618519646426;0.0012942321331926 -51;0.03164590700119638;0.0220433233834553 -68;0.02550445772560432;0.0030372136890794 -126;0.02185286752485246;0.0755349436359313 -55;0.034539019485911295;0.004404067624328 -112;0.02347210563214829;0.0300770518458321 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diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_xgb_EG.1_post_EG.1_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_xgb_EG.1_post_EG.1_post.csv index 32b80f6..2a871a6 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_xgb_EG.1_post_EG.1_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_post/df_pred-test_xgb_EG.1_post_EG.1_post.csv @@ -1,29 +1,29 @@ ;EG.1_post_pred;EG.1_post -135;0.020892901;0.0016874701131654 -66;0.035384312;0.0600860460844911 -31;0.025601283;0.0010671456495164 -118;0.02060132;0.0312217400456765 -42;0.038943525;0.0838593433196807 -12;0.045637637;0.0012942321331926 -51;0.038974233;0.0220433233834553 -68;0.023321042;0.0030372136890794 -126;0.023107119;0.0755349436359313 -55;0.04335462;0.004404067624328 -112;0.04731029;0.0300770518458321 -130;0.021891726;0.0267385776806448 -80;0.035849877;0.021460503262318 -19;0.015660867;0.0102344020048769 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--- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_postmetrics_EG.1_post_lgbm_EG.1_post.csv @@ -0,0 +1,8 @@ +index;Value +target;EG.1_post +method;lgbm_EG.1_post +r2;-0.01601561054820899 +mae;0.030228762313727547 +mse;0.002513022485108626 +mape;3.972748181507388 +ev;0.03441165489878717 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_postmetrics_EG.1_post_rf_EG.1_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_postmetrics_EG.1_post_rf_EG.1_post.csv new file mode 100644 index 0000000..a9ce845 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_postmetrics_EG.1_post_rf_EG.1_post.csv @@ -0,0 +1,8 @@ +index;Value +target;EG.1_post +method;rf_EG.1_post +r2;-0.04007961968173013 +mae;0.031444521064254785 +mse;0.0025725426296876732 +mape;5.089648605952826 +ev;-0.009976390769878885 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_postmetrics_EG.1_post_xgb_EG.1_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_postmetrics_EG.1_post_xgb_EG.1_post.csv new file mode 100644 index 0000000..7274240 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/EG.1_postmetrics_EG.1_post_xgb_EG.1_post.csv @@ -0,0 +1,8 @@ +index;Value +target;EG.1_post +method;xgb_EG.1_post +r2;-0.08823051953140859 +mae;0.03151883656094791 +mse;0.0026916395143656217 +mape;5.407053763141097 +ev;-0.06492135396647236 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/E_plasm_post/df_pred-test_lgbm_E_plasm_post_E_plasm_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/E_plasm_post/df_pred-test_lgbm_E_plasm_post_E_plasm_post.csv new file mode 100644 index 0000000..b66c648 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/E_plasm_post/df_pred-test_lgbm_E_plasm_post_E_plasm_post.csv @@ -0,0 +1,29 @@ +;E_plasm_post_pred;E_plasm_post +135;0.36002958407336483;0.35682023486901515 +66;0.35475590622232067;0.555555555555556 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+++ b/results/indResults/trainedAllOwnDataset+Anthropo/E_plasm_postmetrics_E_plasm_post_rf_E_plasm_post.csv @@ -0,0 +1,8 @@ +index;Value +target;E_plasm_post +method;rf_E_plasm_post +r2;-0.032452325215394096 +mae;0.14705679783782782 +mse;0.037048251287640346 +mape;0.6046518752935326 +ev;-0.023571400326199754 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/E_plasm_postmetrics_E_plasm_post_xgb_E_plasm_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/E_plasm_postmetrics_E_plasm_post_xgb_E_plasm_post.csv new file mode 100644 index 0000000..33bd0bc --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/E_plasm_postmetrics_E_plasm_post_xgb_E_plasm_post.csv @@ -0,0 +1,8 @@ +index;Value +target;E_plasm_post +method;xgb_E_plasm_post +r2;0.0014335324288963225 +mae;0.14611003116582788 +mse;0.03583229996626484 +mape;0.6219048750195378 +ev;0.004748748134711267 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/E_urine_post/df_pred-test_lgbm_E_urine_post_E_urine_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/E_urine_post/df_pred-test_lgbm_E_urine_post_E_urine_post.csv deleted file mode 100644 index 565709b..0000000 --- a/results/indResults/trainedAllOwnDataset+Anthropo/E_urine_post/df_pred-test_lgbm_E_urine_post_E_urine_post.csv +++ /dev/null @@ -1,29 +0,0 @@ -;E_urine_post_pred;E_urine_post -135;0.0928737342769644;0.0678226035912521 -66;0.07528353453218568;0.0424301861086545 -31;0.06695753362651301;0.164926469073301 -118;0.10207703001175797;0.147361344344955 -42;0.06695753362651301;0.0452315828428794 -12;0.09888282171016782;0.0762935895907884 -51;0.1072088226158405;0.15220917735442 -68;0.06054297060421192;0.0326906119983632 -126;0.09954791371585177;0.09796351024448237 -55;0.10811161267786906;0.0194137190096008 -112;0.15025816810918646;0.169225049310539 -130;0.13659137697921245;0.0797310433804953 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a/results/indResults/trainedAllOwnDataset+Anthropo/HE.GG_postmetrics_HE.GG_post_lgbm_HE.GG_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/HE.GG_postmetrics_HE.GG_post_lgbm_HE.GG_post.csv new file mode 100644 index 0000000..c62cba2 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE.GG_postmetrics_HE.GG_post_lgbm_HE.GG_post.csv @@ -0,0 +1,8 @@ +index;Value +target;HE.GG_post +method;lgbm_HE.GG_post +r2;-0.0842472091350559 +mae;0.07018095429044936 +mse;0.008524060159070162 +mape;0.09768404438790569 +ev;-0.08032832040780158 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/HE.GG_postmetrics_HE.GG_post_rf_HE.GG_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/HE.GG_postmetrics_HE.GG_post_rf_HE.GG_post.csv new file mode 100644 index 0000000..26c7040 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE.GG_postmetrics_HE.GG_post_rf_HE.GG_post.csv @@ -0,0 +1,8 @@ +index;Value +target;HE.GG_post +method;rf_HE.GG_post 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a/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_post/df_pred-test_xgb_HE.G_urine_post_HE.G_urine_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_post/df_pred-test_xgb_HE.G_urine_post_HE.G_urine_post.csv @@ -1,29 +1,29 @@ ;HE.G_urine_post_pred;HE.G_urine_post -135;0.052739903;0.007532751091703 -66;0.052017048;0.0224454148471616 -31;0.05152039;0.0034061135371179 -118;0.050622113;0.0893777292576419 -42;0.052322138;0.0050655021834061 -12;0.055699717;0.0046288209606986 -51;0.053509086;0.0164737991266376 -68;0.05267743;0.0024344978165938 -126;0.053527817;0.0484934497816594 -55;0.053005986;0.0442467248908297 -112;0.055415016;0.0154912663755459 -130;0.051741805;0.0099454148471615 -80;0.05349353;0.0025 -19;0.059591275;0.154563318777293 -86;0.053985186;0.0171288209606987 -69;0.053727508;0.0528275109170306 -11;0.057165418;0.187248908296943 -27;0.05225457;0.0343340611353712 -134;0.05313752;0.0029585152838428 -109;0.05528936;0.0022816593886462 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a/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_postmetrics_HE.G_urine_post_lgbm_HE.G_urine_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_postmetrics_HE.G_urine_post_lgbm_HE.G_urine_post.csv new file mode 100644 index 0000000..655350a --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_postmetrics_HE.G_urine_post_lgbm_HE.G_urine_post.csv @@ -0,0 +1,8 @@ +index;Value +target;HE.G_urine_post +method;lgbm_HE.G_urine_post +r2;-0.005099712797940192 +mae;0.055405033106200076 +mse;0.007917937563334795 +mape;8.460159471850302 +ev;-0.0004114791536165008 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_postmetrics_HE.G_urine_post_rf_HE.G_urine_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_postmetrics_HE.G_urine_post_rf_HE.G_urine_post.csv new file mode 100644 index 0000000..9021d14 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_postmetrics_HE.G_urine_post_rf_HE.G_urine_post.csv @@ -0,0 +1,8 @@ +index;Value +target;HE.G_urine_post +method;rf_HE.G_urine_post +r2;0.014727462263719682 +mae;0.05747364314903237 +mse;0.007761743772612768 +mape;8.854808461703682 +ev;0.030328315415716012 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_postmetrics_HE.G_urine_post_xgb_HE.G_urine_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_postmetrics_HE.G_urine_post_xgb_HE.G_urine_post.csv new file mode 100644 index 0000000..a26f5f1 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE.G_urine_postmetrics_HE.G_urine_post_xgb_HE.G_urine_post.csv @@ -0,0 +1,8 @@ +index;Value +target;HE.G_urine_post +method;xgb_HE.G_urine_post +r2;-0.03750918192389685 +mae;0.05474354980193912 +mse;0.008173251687627796 +mape;8.384185926063045 +ev;-0.0349857960654294 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/HE_post/df_pred-test_lgbm_HE_post_HE_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/HE_post/df_pred-test_lgbm_HE_post_HE_post.csv index 95e8440..5498b92 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/HE_post/df_pred-test_lgbm_HE_post_HE_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE_post/df_pred-test_lgbm_HE_post_HE_post.csv @@ -1,29 +1,29 @@ ;HE_post_pred;HE_post -135;0.6100343803729104;0.661572052401747 -66;0.6439439229278087;0.655021834061135 -31;0.6178691475686268;0.414847161572052 -118;0.623217300610485;0.593886462882096 -42;0.6336184159444747;0.532751091703057 -12;0.5962381919429461;0.550218340611354 -51;0.5998466096489219;0.59825327510917 -68;0.6051927272800022;0.685589519650655 -126;0.615545506547443;0.576419213973799 -55;0.5985595889045802;0.713973799126637 -112;0.6277049433986576;0.572052401746725 -130;0.610434574964575;0.604803493449782 -80;0.6185097188302958;0.718340611353712 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681ebbc..a843741 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/HE_post/df_pred-test_rf_HE_post_HE_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE_post/df_pred-test_rf_HE_post_HE_post.csv @@ -1,29 +1,29 @@ ;HE_post_pred;HE_post -135;0.59287372261109;0.661572052401747 -66;0.6404440567172144;0.655021834061135 -31;0.628036295981612;0.414847161572052 -118;0.635633808235923;0.593886462882096 -42;0.6067866276878559;0.532751091703057 -12;0.5979901556305898;0.550218340611354 -51;0.5808288260591077;0.59825327510917 -68;0.6377669120529795;0.685589519650655 -126;0.6389000014426687;0.576419213973799 -55;0.5627025889472431;0.713973799126637 -112;0.6467413470919903;0.572052401746725 -130;0.6156914880051203;0.604803493449782 -80;0.7141873677804422;0.718340611353712 -19;0.5899016133867634;0.602620087336245 -86;0.6568638987709723;0.639737991266376 -69;0.5904860396743213;0.685589519650655 -11;0.5467007125066354;0.648471615720524 -27;0.6886631103006329;0.705240174672489 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b/results/indResults/trainedAllOwnDataset+Anthropo/HE_post/df_pred-test_xgb_HE_post_HE_post.csv @@ -1,29 +1,29 @@ ;HE_post_pred;HE_post -135;0.60761553;0.661572052401747 -66;0.6563399;0.655021834061135 -31;0.6407102;0.414847161572052 -118;0.62390697;0.593886462882096 -42;0.62122905;0.532751091703057 -12;0.5599851;0.550218340611354 -51;0.5328154;0.59825327510917 -68;0.63201475;0.685589519650655 -126;0.6092476;0.576419213973799 -55;0.5568226;0.713973799126637 -112;0.6390606;0.572052401746725 -130;0.58265984;0.604803493449782 -80;0.6559962;0.718340611353712 -19;0.60588825;0.602620087336245 -86;0.67326105;0.639737991266376 -69;0.5816721;0.685589519650655 -11;0.47154358;0.648471615720524 -27;0.7147822;0.705240174672489 -134;0.5656757;0.64410480349345 -109;0.5965605;0.480349344978166 -36;0.58838457;0.665938864628821 -117;0.64102685;0.694323144104804 -78;0.62957805;0.655021834061135 -4;0.5980092;0.53056768558952 -73;0.62183523;0.596069868995633 -26;0.6580328;0.596069868995633 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a/results/indResults/trainedAllOwnDataset+Anthropo/HE_postmetrics_HE_post_lgbm_HE_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/HE_postmetrics_HE_post_lgbm_HE_post.csv new file mode 100644 index 0000000..bd008ff --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE_postmetrics_HE_post_lgbm_HE_post.csv @@ -0,0 +1,8 @@ +index;Value +target;HE_post +method;lgbm_HE_post +r2;-0.02185497882209453 +mae;0.06010387425085687 +mse;0.005768313323548961 +mape;0.10495410978335452 +ev;-0.021681062843153187 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/HE_postmetrics_HE_post_rf_HE_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/HE_postmetrics_HE_post_rf_HE_post.csv new file mode 100644 index 0000000..e1ec00e --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE_postmetrics_HE_post_rf_HE_post.csv @@ -0,0 +1,8 @@ +index;Value +target;HE_post +method;rf_HE_post +r2;-0.040520933347879984 +mae;0.06114160417064006 +mse;0.005873681576793625 +mape;0.10745425911672979 +ev;-0.023609362235584408 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/HE_postmetrics_HE_post_xgb_HE_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/HE_postmetrics_HE_post_xgb_HE_post.csv new file mode 100644 index 0000000..7251e3b --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/HE_postmetrics_HE_post_xgb_HE_post.csv @@ -0,0 +1,8 @@ +index;Value +target;HE_post +method;xgb_HE_post +r2;-0.229949335740943 +mae;0.0653078886247469 +mse;0.006942994150523068 +mape;0.11430731303906451 +ev;-0.22950690442201505 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/df_pred-test_lgbm_N.GG_post_N.GG_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/df_pred-test_lgbm_N.GG_post_N.GG_post.csv index ccd49d9..3de6f88 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/df_pred-test_lgbm_N.GG_post_N.GG_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/df_pred-test_lgbm_N.GG_post_N.GG_post.csv @@ -1,29 +1,29 @@ ;N.GG_post_pred;N.GG_post -135;0.02673117745238857;0.004908815892496 -66;0.026748623655586886;0.0130953164211004 -31;0.026745703628499484;0.0262003874785116 -118;0.0239338570441031;0.0048062648922114 -42;0.02677037417996613;0.0429925765800138 -12;0.023524741516429196;0.0260220727188403 -51;0.025120715114950988;0.0276782415517836 -68;0.024691233356991367;0.0114789744938376 -126;0.02677037417996613;0.0128066789059844 -55;0.024676707180880452;0.013088042165838 -112;0.026748623655586886;0.0049172306361744 -130;0.02673117745238857;0.02790433557696498 -80;0.024676707180880452;0.0008700060660801 -19;0.02354649204080844;0.113541325123415 -86;0.02673117745238857;0.0219426628010699 -69;0.0239338570441031;0.0067403528462088 -11;0.023951303247301416;0.02790433557696498 -27;0.024691233356991367;0.0044108610296818 -134;0.02354649204080844;0.02790433557696498 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b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/df_pred-test_rf_N.GG_post_N.GG_post.csv @@ -1,29 +1,29 @@ ;N.GG_post_pred;N.GG_post -135;0.027285281837053966;0.004908815892496 -66;0.027188744089921803;0.0130953164211004 -31;0.02737473718195695;0.0262003874785116 -118;0.027220252773628408;0.0048062648922114 -42;0.02731700126306343;0.0429925765800138 -12;0.027053803969717103;0.0260220727188403 -51;0.027341921836256996;0.0276782415517836 -68;0.0272425665613136;0.0114789744938376 -126;0.027227317442877187;0.0128066789059844 -55;0.02709361265675839;0.013088042165838 -112;0.02727327502101959;0.0049172306361744 -130;0.027155160594609384;0.02790433557696498 -80;0.027073839764424;0.0008700060660801 -19;0.027336464521643972;0.113541325123415 -86;0.02730426949277456;0.0219426628010699 -69;0.027280847062649344;0.0067403528462088 -11;0.027408357461164184;0.02790433557696498 -27;0.027152330041967782;0.0044108610296818 -134;0.02723746591454339;0.02790433557696498 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a/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/df_pred-test_xgb_N.GG_post_N.GG_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/df_pred-test_xgb_N.GG_post_N.GG_post.csv @@ -1,29 +1,29 @@ ;N.GG_post_pred;N.GG_post -135;0.02494792;0.004908815892496 -66;0.024982471;0.0130953164211004 -31;0.024889981;0.0262003874785116 -118;0.024853073;0.0048062648922114 -42;0.024965338;0.0429925765800138 -12;0.024863157;0.0260220727188403 -51;0.02501848;0.0276782415517836 -68;0.024919972;0.0114789744938376 -126;0.024967477;0.0128066789059844 -55;0.024951225;0.013088042165838 -112;0.024912491;0.0049172306361744 -130;0.024909534;0.02790433557696498 -80;0.024991341;0.0008700060660801 -19;0.025026193;0.113541325123415 -86;0.02491007;0.0219426628010699 -69;0.024896361;0.0067403528462088 -11;0.024925888;0.02790433557696498 -27;0.025066629;0.0044108610296818 -134;0.024885124;0.02790433557696498 -109;0.02491783;0.0034773545635132 -36;0.025002046;0.0256822189250524 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a/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/testVsPredicted_lmplot_N.GG_post_xgb_N.GG_post_.png b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/testVsPredicted_lmplot_N.GG_post_xgb_N.GG_post_.png index faf304d..87390c3 100644 Binary files a/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/testVsPredicted_lmplot_N.GG_post_xgb_N.GG_post_.png and b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_post/testVsPredicted_lmplot_N.GG_post_xgb_N.GG_post_.png differ diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_postmetrics_N.GG_post_lgbm_N.GG_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_postmetrics_N.GG_post_lgbm_N.GG_post.csv new file mode 100644 index 0000000..8c31dc1 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_postmetrics_N.GG_post_lgbm_N.GG_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N.GG_post +method;lgbm_N.GG_post +r2;-0.025306760139855333 +mae;0.022733553019691956 +mse;0.0018695314605175141 +mape;2.7355386206908285 +ev;-0.011222761011631777 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_postmetrics_N.GG_post_rf_N.GG_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_postmetrics_N.GG_post_rf_N.GG_post.csv new file mode 100644 index 0000000..cacc069 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_postmetrics_N.GG_post_rf_N.GG_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N.GG_post +method;rf_N.GG_post +r2;-0.018308550840109072 +mae;0.02330766715346899 +mse;0.0018567710136329376 +mape;2.782041423848672 +ev;-0.01260283627501324 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_postmetrics_N.GG_post_xgb_N.GG_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_postmetrics_N.GG_post_xgb_N.GG_post.csv new file mode 100644 index 0000000..a62cb7f --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.GG_postmetrics_N.GG_post_xgb_N.GG_post.csv @@ -0,0 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a/results/indResults/trainedAllOwnDataset+Anthropo/N.G_urine_postmetrics_N.G_urine_post_rf_N.G_urine_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N.G_urine_postmetrics_N.G_urine_post_rf_N.G_urine_post.csv new file mode 100644 index 0000000..ef86347 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.G_urine_postmetrics_N.G_urine_post_rf_N.G_urine_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N.G_urine_post +method;rf_N.G_urine_post +r2;-0.20034944870169502 +mae;0.056077640058051714 +mse;0.004801844125674537 +mape;1.9322610695862192 +ev;-0.18085234164397979 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N.G_urine_postmetrics_N.G_urine_post_xgb_N.G_urine_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N.G_urine_postmetrics_N.G_urine_post_xgb_N.G_urine_post.csv new file mode 100644 index 0000000..1626489 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.G_urine_postmetrics_N.G_urine_post_xgb_N.G_urine_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N.G_urine_post +method;xgb_N.G_urine_post +r2;-0.11760109978976274 +mae;0.05268307371104942 +mse;0.004470819961368218 +mape;1.8403623117712535 +ev;-0.10685653944708551 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N.S_post/df_pred-test_lgbm_N.S_post_N.S_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N.S_post/df_pred-test_lgbm_N.S_post_N.S_post.csv index 8d3da21..449cc1c 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/N.S_post/df_pred-test_lgbm_N.S_post_N.S_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.S_post/df_pred-test_lgbm_N.S_post_N.S_post.csv @@ -1,29 +1,29 @@ ;N.S_post_pred;N.S_post -135;0.10075187554731846;0.0119666777598118 -66;0.10075187554731846;0.0192238457992087 -31;0.10075187554731846;0.271762143608473 -118;0.1011486579878831;0.067559321994232 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b/results/indResults/trainedAllOwnDataset+Anthropo/N.S_postmetrics_N.S_post_lgbm_N.S_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N.S_post +method;lgbm_N.S_post +r2;-0.40243546554116105 +mae;0.06042499844490195 +mse;0.0049421298469953575 +mape;3.2127087490325996 +ev;-0.0033988339895802966 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N.S_postmetrics_N.S_post_rf_N.S_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N.S_postmetrics_N.S_post_rf_N.S_post.csv new file mode 100644 index 0000000..e900e7c --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.S_postmetrics_N.S_post_rf_N.S_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N.S_post +method;rf_N.S_post +r2;-0.2911287155264932 +mae;0.057344067275777975 +mse;0.0045498890452360585 +mape;3.034537731162589 +ev;0.005886992776350075 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N.S_postmetrics_N.S_post_xgb_N.S_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N.S_postmetrics_N.S_post_xgb_N.S_post.csv new file mode 100644 index 0000000..a141937 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N.S_postmetrics_N.S_post_xgb_N.S_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N.S_post +method;xgb_N.S_post +r2;-0.40725148433826197 +mae;0.06027746084404181 +mse;0.004959101316147172 +mape;3.249931607165216 +ev;0.006103575866085342 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N_post/df_pred-test_lgbm_N_post_N_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N_post/df_pred-test_lgbm_N_post_N_post.csv index 12d0d5d..71e84de 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/N_post/df_pred-test_lgbm_N_post_N_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N_post/df_pred-test_lgbm_N_post_N_post.csv @@ -1,29 +1,29 @@ ;N_post_pred;N_post -135;0.04021810104701673;0.007525520697323 -66;0.040427081772697805;0.0282734488364028 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b/results/indResults/trainedAllOwnDataset+Anthropo/N_postmetrics_N_post_lgbm_N_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N_post +method;lgbm_N_post +r2;0.0006183158362590424 +mae;0.026371688048291424 +mse;0.0015363374013984844 +mape;1.2530524474469487 +ev;0.0012300711126825847 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N_postmetrics_N_post_rf_N_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N_postmetrics_N_post_rf_N_post.csv new file mode 100644 index 0000000..f540cba --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N_postmetrics_N_post_rf_N_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N_post +method;rf_N_post +r2;-0.017257162420700745 +mae;0.02644939528719503 +mse;0.001563817158381456 +mape;1.217408027710095 +ev;-0.016811625763704763 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/N_postmetrics_N_post_xgb_N_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/N_postmetrics_N_post_xgb_N_post.csv new file mode 100644 index 0000000..7b2508b --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/N_postmetrics_N_post_xgb_N_post.csv @@ -0,0 +1,8 @@ +index;Value +target;N_post +method;xgb_N_post +r2;0.001137135141483947 +mae;0.026329455650646483 +mse;0.0015355398267422591 +mape;1.2569132546097708 +ev;0.0018532188480164802 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/Total.E_urine_post/df_pred-test_lgbm_Total.E_urine_post_Total.E_urine_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/Total.E_urine_post/df_pred-test_lgbm_Total.E_urine_post_Total.E_urine_post.csv index 5ff0b6f..aeed3f7 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/Total.E_urine_post/df_pred-test_lgbm_Total.E_urine_post_Total.E_urine_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/Total.E_urine_post/df_pred-test_lgbm_Total.E_urine_post_Total.E_urine_post.csv @@ -1,29 +1,29 @@ ;Total.E_urine_post_pred;Total.E_urine_post 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+132;0.07796220459171407;0.0692121146512906 +60;0.10274581727098686;0.17184814783723 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_post/df_pred-test_xgb_Total.N_post_Total.N_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_post/df_pred-test_xgb_Total.N_post_Total.N_post.csv index ce9be1a..71adc72 100644 --- a/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_post/df_pred-test_xgb_Total.N_post_Total.N_post.csv +++ b/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_post/df_pred-test_xgb_Total.N_post_Total.N_post.csv @@ -1,29 +1,29 @@ ;Total.N_post_pred;Total.N_post -135;0.09547902;0.0494582035296564 -66;0.09621487;0.0108536878891862 -31;0.078129865;0.0691881205640523 -118;0.065258116;0.183032897318993 -42;0.07394379;0.0532739881108947 -12;0.09353266;0.0185480107164051 -51;0.13966958;0.0971008192457126 -68;0.12676477;0.171927275257926 -126;0.07887081;0.123281109909106 -55;0.110017285;0.0686441308014138 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+130;0.08914337;0.152465536794519 +80;0.103961825;0.008012454357685 +19;0.100810766;0.278571356376836 +86;0.08447401;0.0552564587815948 +69;0.12677751;0.0209932647228735 +11;0.15114623;0.0412012707619581 +27;0.10449897;0.0360974895403457 +134;0.14112052;0.0390562049790376 +109;0.1790596;0.120752895896144 +36;0.14299123;0.0106826299674312 +117;0.054979697;0.0491259854365669 +78;0.07070959;0.0414194569073727 +4;0.08498162;0.0091248615687467 +73;0.05894296;0.0843736512632108 +26;0.07182944;0.0327125504301127 +132;0.086350195;0.0692121146512906 +60;0.089499734;0.17184814783723 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_post/residualsVsPredicted_Total.N_post_lgbm_Total.N_post_.png b/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_post/residualsVsPredicted_Total.N_post_lgbm_Total.N_post_.png index 08bd5fe..fa7e9e1 100644 Binary files a/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_post/residualsVsPredicted_Total.N_post_lgbm_Total.N_post_.png and 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a/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_postmetrics_Total.N_post_lgbm_Total.N_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_postmetrics_Total.N_post_lgbm_Total.N_post.csv new file mode 100644 index 0000000..5d5b069 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_postmetrics_Total.N_post_lgbm_Total.N_post.csv @@ -0,0 +1,8 @@ +index;Value +target;Total.N_post +method;lgbm_Total.N_post +r2;-0.014128864409000741 +mae;0.05338025373209249 +mse;0.004232570744687668 +mape;1.870866636812844 +ev;0.02782107063831185 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_postmetrics_Total.N_post_rf_Total.N_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_postmetrics_Total.N_post_rf_Total.N_post.csv new file mode 100644 index 0000000..ff9fb92 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_postmetrics_Total.N_post_rf_Total.N_post.csv @@ -0,0 +1,8 @@ +index;Value +target;Total.N_post +method;rf_Total.N_post +r2;-0.0963708671691963 +mae;0.055255923787994085 +mse;0.004575816171461101 +mape;1.8920905827526726 +ev;-0.06683387531337104 diff --git a/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_postmetrics_Total.N_post_xgb_Total.N_post.csv b/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_postmetrics_Total.N_post_xgb_Total.N_post.csv new file mode 100644 index 0000000..b4b9645 --- /dev/null +++ b/results/indResults/trainedAllOwnDataset+Anthropo/Total.N_postmetrics_Total.N_post_xgb_Total.N_post.csv @@ -0,0 +1,8 @@ +index;Value +target;Total.N_post +method;xgb_Total.N_post +r2;-0.3560915107927338 +mae;0.06332071508472485 +mse;0.0056597868940901856 +mape;2.3690217509743676 +ev;-0.23815710308783333 diff --git a/scripts/modelSanoApp.py b/scripts/modelSanoApp.py index a542edd..ab3bbf0 100644 --- a/scripts/modelSanoApp.py +++ b/scripts/modelSanoApp.py @@ -68,7 +68,7 @@ def post_model(model, X_test, y_test, targets, modelname, savePath, multiple = F df_predTest = pd.concat([y_pred, y_test], axis = 1) df_predTest.to_csv(savePath+"/df_pred-test_"+modelname+"_"+targets+".csv", sep = ";") result_metrics = modelMetrics(target=targets, method = modelname, y_true=y_test, y_pred=y_pred) - pd.Series(result_metrics, name="Value").reset_index().to_csv(savePath+"metrics_"+targets+"_"+modelname+".csv", sep=";", decimal=".", index = False) + pd.Series(result_metrics, name="Value").reset_index().to_csv(savePath+"/metrics_"+targets+"_"+modelname+".csv", sep=";", decimal=".", index = False) plotTestVsPredicted (metabs=targets, df_predTest=df_predTest, modelname=modelname, savePath=savePath) @@ -119,6 +119,9 @@ anthropometric_features = ["Weight_pre","Weight_post","Delta_Weight", "Fat_pre","Fat_post","Delta_Fat","CVRI_post", "CVRI_pre" ,"Bpmin_post","Bpmax_post", "Bpmin_pre", "Bpmax_pre","Frec_post","Frec_pre"] +#main_df[anthropometric_features] = main_df[anthropometric_features].apply(pd.to_numeric) + + study_features = ["Sex", "Sweetener"] @@ -159,36 +162,38 @@ plasm_ant_features = ['CA_plasm_pre', 'CA.G_plasm_pre', 'CA.S_plasm_pre', 'To 'VA.GG_plasm_post', 'VA.S_post', 'VA.GS_plasm_post', 'VA.SS_plasm_post', 'Total.VA_plasm_post'] -#post_targets = [i for i in main_df.columns if "_post" in i] -#pre_features = [i for i in main_df.columns if "_pre" in i] -#delta_features = [i for i in main_df.columns if "Delta_" in i] - -#features = pre_features + delta_features -#targets = post_targets # Total VA, Total DHPAA, DHPAA_plasm -> Ok # VA_plasm -> =( -targets = [i for i in urine_flav_features if "_post" in i] - -features = [i for i in anthropometric_features if "_pre in i"] + [i for i in urine_flav_features if "_pre"in i] + study_features +targets = ["Fat_post","CVRI_post","Bpmin_post","Bpmax_post","Frec_post"] +features_list = urine_flav_features+plasm_flav_features+plasm_ant_features+urine_ant_features +features = [i for i in features_list if "_pre" in i] + study_features + ["Fat_pre","CVRI_pre","Bpmin_pre","Bpmax_pre","Frec_pre"] exec_models(main_df, features=features, targets=targets, multiple=False, directory="../results/indResults/") -targets = [i for i in plasm_flav_features if "_post" in i] +full_exec = False +if full_exec: + targets = [i for i in urine_flav_features if "_post" in i and i != "Total.E_urine_post"] -features = [i for i in anthropometric_features if "_pre in i"] + [i for i in plasm_flav_features if "_pre"in i] + study_features + features = [i for i in anthropometric_features if "_pre in i"] + [i for i in urine_flav_features if "_pre"in i and i != "Total.E_urine_pre"] + study_features -exec_models(main_df, features=features, targets=targets, multiple=False, directory="../results/indResults/") + exec_models(main_df, features=features, targets=targets, multiple=False, directory="../results/indResults/") -targets = [i for i in plasm_ant_features if "_post" in i] + targets = [i for i in plasm_flav_features if "_post" in i and i != "Total.E_plasm_post"] -features = [i for i in anthropometric_features if "_pre in i"] + [i for i in plasm_ant_features if "_pre"in i] + study_features + features = [i for i in anthropometric_features if "_pre in i"] + [i for i in plasm_flav_features if "_pre" in i and i != "Total.E_plasm_pre"] + study_features -exec_models(main_df, features=features, targets=targets, multiple=False, directory="../results/indResults/") + exec_models(main_df, features=features, targets=targets, multiple=False, directory="../results/indResults/") -targets = [i for i in urine_ant_features if "_post" in i] + targets = [i for i in plasm_ant_features if "_post" in i] -features = [i for i in anthropometric_features if "_pre in i"] + [i for i in urine_ant_features if "_pre"in i] + study_features + features = [i for i in anthropometric_features if "_pre in i"] + [i for i in plasm_ant_features if "_pre"in i] + study_features -exec_models(main_df, features=features, targets=targets, multiple=False, directory="../results/indResults/") \ No newline at end of file + exec_models(main_df, features=features, targets=targets, multiple=False, directory="../results/indResults/") + + targets = [i for i in urine_ant_features if "_post" in i] + + features = [i for i in anthropometric_features if "_pre in i"] + [i for i in urine_ant_features if "_pre"in i] + study_features + + exec_models(main_df, features=features, targets=targets, multiple=False, directory="../results/indResults/") \ No newline at end of file