2019-09-18 21:52:18 +02:00
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;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
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2021-04-13 08:38:26 +02:00
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;;; Copyright © 2021 Ricardo Wurmus <rekado@elephly.net>
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2021-07-05 09:29:31 +02:00
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;;; Copyright © 2021 Hugo Lecomte <hugo.lecomte@inria.fr>
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2022-01-12 00:59:55 +01:00
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;;; Copyright © 2022 Marius Bakke <marius@gnu.org>
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2022-04-14 04:34:05 +02:00
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;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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2019-09-18 21:52:18 +02:00
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages jupyter)
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#:use-module ((guix licenses) #:prefix license:)
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2022-04-07 02:46:15 +02:00
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#:use-module (guix gexp)
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2019-09-18 21:52:18 +02:00
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#:use-module (guix packages)
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#:use-module (guix download)
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2019-09-18 21:58:28 +02:00
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#:use-module (guix git-download)
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2019-09-18 22:02:10 +02:00
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#:use-module (guix build-system cmake)
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2019-09-18 21:52:18 +02:00
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#:use-module (guix build-system python)
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2021-07-21 11:48:07 +02:00
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#:use-module (gnu packages bash)
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2019-09-18 21:52:18 +02:00
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#:use-module (gnu packages check)
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2019-09-18 22:02:10 +02:00
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#:use-module (gnu packages cpp)
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2022-04-14 04:34:05 +02:00
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#:use-module (gnu packages docker)
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2019-09-18 22:02:10 +02:00
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#:use-module (gnu packages linux)
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2021-08-29 20:47:03 +02:00
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#:use-module (gnu packages monitoring)
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2019-09-18 22:02:10 +02:00
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#:use-module (gnu packages networking)
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#:use-module (gnu packages pkg-config)
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2019-09-18 21:52:18 +02:00
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#:use-module (gnu packages python)
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2021-04-13 08:38:47 +02:00
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#:use-module (gnu packages python-build)
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#:use-module (gnu packages python-check)
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2021-08-29 20:47:03 +02:00
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#:use-module (gnu packages python-crypto)
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2022-05-06 11:32:59 +02:00
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#:use-module (gnu packages python-science)
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2019-09-18 21:52:18 +02:00
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#:use-module (gnu packages python-xyz)
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2021-07-05 09:29:31 +02:00
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#:use-module (gnu packages python-web)
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2021-07-21 13:31:08 +02:00
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#:use-module (gnu packages rdf)
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2019-09-18 22:02:10 +02:00
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#:use-module (gnu packages time)
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2021-07-05 09:29:31 +02:00
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#:use-module (gnu packages xml)
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2021-04-13 08:38:47 +02:00
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#:use-module (gnu packages tls)
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2021-07-05 09:29:31 +02:00
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#:use-module (gnu packages sphinx)
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#:use-module (gnu packages serialization)
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2022-04-14 04:34:05 +02:00
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#:use-module (gnu packages version-control))
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2019-09-18 21:52:18 +02:00
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(define-public python-jupyter-protocol
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(package
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(name "python-jupyter-protocol")
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(version "0.1.1")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "jupyter_protocol" version))
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(sha256
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(base32
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"1bk3as5yw9y5nmq6l15nr46aby34phmvsx9kxgqnm5pd5q2b5h57"))))
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(build-system python-build-system)
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(propagated-inputs
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2021-12-13 17:18:24 +01:00
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(list python-dateutil python-jupyter-core python-pyzmq
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python-traitlets))
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2019-09-18 21:52:18 +02:00
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(native-inputs
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2021-12-13 17:18:24 +01:00
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(list python-ipykernel python-ipython python-mock python-pytest))
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2019-09-18 21:52:18 +02:00
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(home-page "https://jupyter.org")
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(synopsis "Jupyter protocol implementation")
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(description
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"This Python library is an experimental implementation of the
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@uref{https://jupyter-client.readthedocs.io/en/latest/messaging.html, Jupyter
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protocol} to be used by both clients and kernels.")
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(license license:bsd-3)
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(properties '((upstream-name . "jupyter_protocol")))))
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2019-09-18 21:53:57 +02:00
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(define-public python-jupyter-kernel-mgmt
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(package
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(name "python-jupyter-kernel-mgmt")
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(version "0.4.0")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "jupyter_kernel_mgmt" version))
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(sha256
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(base32
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"0i7a78dn89ca8h0a42giyxwcmk6y4wrdr7q8h2ax9vybb84c795q"))))
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(build-system python-build-system)
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(propagated-inputs
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2021-12-13 17:18:24 +01:00
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(list python-dateutil
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python-entrypoints
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python-jupyter-core
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python-jupyter-protocol
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python-pyzmq
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python-traitlets))
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2019-09-18 21:53:57 +02:00
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(native-inputs
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2021-12-13 17:18:24 +01:00
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(list python-ipykernel python-ipython python-mock python-pytest))
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2019-09-18 21:53:57 +02:00
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(home-page "https://jupyter.org")
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(synopsis "Discover, launch, and communicate with Jupyter kernels")
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(description
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"This package is an experimental refactoring of the machinery for
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launching and using Jupyter kernels.")
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(license license:bsd-3)
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(properties '((upstream-name . "jupyter_kernel_mgmt")))))
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2019-09-18 21:58:28 +02:00
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(define-public python-jupyter-kernel-test
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(package
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(name "python-jupyter-kernel-test")
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(version "0.3")
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(home-page "https://github.com/jupyter/jupyter_kernel_test")
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(source (origin
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;; PyPI has a ".whl" file but not a proper source release.
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;; Thus, fetch code from Git.
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(method git-fetch)
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(uri (git-reference (url home-page) (commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"00iy74i4i8is6axb9vlsm0b9wxkvyyxnbl8r0i4gaj3xd788jm83"))))
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(build-system python-build-system)
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(arguments
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;; The repo doesn't contain a "setup.py" file so install files manually.
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'(#:phases (modify-phases %standard-phases
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(delete 'build)
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(delete 'check)
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(replace 'install
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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2019-10-12 18:37:29 +02:00
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(version (python-version (assoc-ref inputs "python")))
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2019-09-18 21:58:28 +02:00
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(pydir (string-append out "/lib/python"
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version "/site-packages/"
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"jupyter_kernel_test")))
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(for-each (lambda (file)
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(install-file file pydir))
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(find-files "jupyter_kernel_test"
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"\\.py$"))
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#t))))))
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(propagated-inputs
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2021-12-13 17:18:24 +01:00
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(list python-jupyter-kernel-mgmt python-jupyter-protocol
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python-jsonschema))
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2019-09-18 21:58:28 +02:00
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(synopsis "Test Jupyter kernels")
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(description
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"@code{jupyter_kernel_test} is a tool for testing Jupyter kernels. It
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tests kernels for successful code execution and conformance with the
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@uref{https://jupyter-client.readthedocs.io/en/latest/messaging.html, Jupyter
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Messaging Protocol}.")
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(license license:bsd-3)))
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2019-09-18 22:02:10 +02:00
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(define-public xeus
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(package
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(name "xeus")
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(version "0.23.2")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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gnu: Remove ".git" from "https://github/…/….git".
Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix
swh) would sometimes return #f for these because the ".git" URLs are
redirects to the non-".git" URLs. Consequently, 'guix lint -c archival'
would keep saying "scheduled Software Heritage archival"; likewise, the
fallback download code would fail.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/aidc.scm,
gnu/packages/algebra.scm,
gnu/packages/android.scm,
gnu/packages/animation.scm,
gnu/packages/arcan.scm,
gnu/packages/assembly.scm,
gnu/packages/audio.scm,
gnu/packages/authentication.scm,
gnu/packages/avr.scm,
gnu/packages/axoloti.scm,
gnu/packages/backup.scm,
gnu/packages/bash.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/boost.scm,
gnu/packages/build-tools.scm,
gnu/packages/c.scm,
gnu/packages/calendar.scm,
gnu/packages/cdrom.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/chez.scm,
gnu/packages/clojure.scm,
gnu/packages/code.scm,
gnu/packages/compression.scm,
gnu/packages/compton.scm,
gnu/packages/coq.scm,
gnu/packages/cpp.scm,
gnu/packages/cran.scm,
gnu/packages/crypto.scm,
gnu/packages/curl.scm,
gnu/packages/databases.scm,
gnu/packages/datastructures.scm,
gnu/packages/debug.scm,
gnu/packages/disk.scm,
gnu/packages/distributed.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/dns.scm,
gnu/packages/docker.scm,
gnu/packages/education.scm,
gnu/packages/efi.scm,
gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/embedded.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/erlang.scm,
gnu/packages/fabric-management.scm,
gnu/packages/file-systems.scm,
gnu/packages/finance.scm,
gnu/packages/firmware.scm,
gnu/packages/flashing-tools.scm,
gnu/packages/fonts.scm,
gnu/packages/fontutils.scm,
gnu/packages/fpga.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/genealogy.scm,
gnu/packages/genimage.scm,
gnu/packages/geo.scm,
gnu/packages/gimp.scm,
gnu/packages/gl.scm,
gnu/packages/gnome-xyz.scm,
gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/golang.scm,
gnu/packages/gpodder.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/groff.scm,
gnu/packages/groovy.scm,
gnu/packages/gtk.scm,
gnu/packages/guile-xyz.scm,
gnu/packages/guile.scm,
gnu/packages/hardware.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-xyz.scm,
gnu/packages/hexedit.scm,
gnu/packages/i2p.scm,
gnu/packages/ibus.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/ipfs.scm,
gnu/packages/java-graphics.scm,
gnu/packages/java-maths.scm,
gnu/packages/java.scm,
gnu/packages/javascript.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/jupyter.scm,
gnu/packages/kodi.scm,
gnu/packages/language.scm,
gnu/packages/lego.scm,
gnu/packages/less.scm,
gnu/packages/libusb.scm,
gnu/packages/linux.scm,
gnu/packages/lirc.scm,
gnu/packages/lisp-xyz.scm,
gnu/packages/llvm.scm,
gnu/packages/logging.scm,
gnu/packages/lolcode.scm,
gnu/packages/lua.scm,
gnu/packages/lxde.scm,
gnu/packages/lxqt.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/markup.scm,
gnu/packages/maths.scm,
gnu/packages/maven.scm,
gnu/packages/mes.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/node-xyz.scm,
gnu/packages/ocaml.scm,
gnu/packages/ocr.scm,
gnu/packages/onc-rpc.scm,
gnu/packages/opencl.scm,
gnu/packages/opencog.scm,
gnu/packages/pantheon.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/perl6.scm,
gnu/packages/phabricator.scm,
gnu/packages/popt.scm,
gnu/packages/printers.scm,
gnu/packages/prolog.scm,
gnu/packages/protobuf.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/python-xyz.scm,
gnu/packages/qt.scm,
gnu/packages/radio.scm,
gnu/packages/rails.scm,
gnu/packages/rdf.scm,
gnu/packages/rednotebook.scm,
gnu/packages/rpc.scm,
gnu/packages/rsync.scm,
gnu/packages/ruby.scm,
gnu/packages/rust.scm,
gnu/packages/scheme.scm,
gnu/packages/screen.scm,
gnu/packages/security-token.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/shellutils.scm,
gnu/packages/simh.scm,
gnu/packages/sml.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/stenography.scm,
gnu/packages/sync.scm,
gnu/packages/syncthing.scm,
gnu/packages/synergy.scm,
gnu/packages/telephony.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tmux.scm,
gnu/packages/tor.scm,
gnu/packages/toys.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/vim.scm,
gnu/packages/virtualization.scm,
gnu/packages/vlang.scm,
gnu/packages/vnc.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wireservice.scm,
gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm,
tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
2020-07-12 22:53:28 +02:00
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(url "https://github.com/QuantStack/xeus")
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2019-09-18 22:02:10 +02:00
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(commit version)))
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(sha256
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(base32
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"1m1b6z1538r7mv2ggn7bdbd9570ja7cadplq64zl8rgl2c8vdi2a"))
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(file-name (git-file-name name version))))
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(build-system cmake-build-system)
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(arguments
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'(#:configure-flags '("-DBUILD_STATIC_LIBS=OFF"
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"-DDISABLE_ARCH_NATIVE=ON" ;no '-march=native'
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"-DBUILD_TESTING=ON")))
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(native-inputs
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2021-12-13 17:18:24 +01:00
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(list pkg-config
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;; The following inputs are used by the test suite.
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googletest
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python-pytest
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python-3
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python-jupyter-kernel-test
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python-jupyter-client))
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2019-09-18 22:02:10 +02:00
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(inputs
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2021-12-13 17:18:24 +01:00
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(list xtl
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json-modern-cxx
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cppzmq
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zeromq
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openssl
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`(,util-linux "lib"))) ;libuuid
|
2019-09-18 22:02:10 +02:00
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(home-page "https://quantstack.net/xeus")
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(synopsis "C++ implementation of the Jupyter Kernel protocol")
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(description
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"@code{xeus} is a library meant to facilitate the implementation of
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kernels for Jupyter. It takes the burden of implementing the Jupyter Kernel
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protocol so developers can focus on implementing the interpreter part of the
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kernel.
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Several Jupyter kernels are built upon @code{xeus}, such as @code{xeus-cling},
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a kernel for the C++ programming language, and @code{xeus-python}, an
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alternative Python kernel for Jupyter.")
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(license license:bsd-3)))
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2021-04-13 08:38:26 +02:00
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(define-public python-jupyterlab-pygments
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(package
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(name "python-jupyterlab-pygments")
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(version "0.1.2")
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(source
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(origin
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(method url-fetch)
|
|
|
|
(uri (pypi-uri "jupyterlab_pygments" version))
|
|
|
|
(sha256
|
|
|
|
(base32
|
|
|
|
"0ij14mmnc39nmf84i0av6j9glazjic7wzv1qyhr0j5966s3s1kfg"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(arguments '(#:tests? #false)) ; there are no tests
|
|
|
|
(propagated-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-pygments))
|
2021-04-13 08:38:26 +02:00
|
|
|
(home-page "https://jupyter.org")
|
|
|
|
(synopsis "Pygments theme using JupyterLab CSS variables")
|
|
|
|
(description
|
|
|
|
"This package contains a syntax coloring theme for pygments making use of
|
|
|
|
the JupyterLab CSS variables.")
|
|
|
|
(license license:bsd-3)))
|
2021-04-13 08:38:47 +02:00
|
|
|
|
2021-04-13 13:14:37 +02:00
|
|
|
(define-public python-jupyter-packaging
|
|
|
|
(package
|
|
|
|
(name "python-jupyter-packaging")
|
2022-04-07 02:46:15 +02:00
|
|
|
(version "0.12.0")
|
2021-04-13 13:14:37 +02:00
|
|
|
(source
|
|
|
|
(origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "jupyter_packaging" version))
|
|
|
|
(sha256
|
|
|
|
(base32
|
2022-04-07 02:46:15 +02:00
|
|
|
"1b7ssc627vgrdl21c09w9sxk5fc1ps3g7f70laxag4yw1bb5ax5j"))))
|
2021-04-13 13:14:37 +02:00
|
|
|
(build-system python-build-system)
|
2022-04-07 02:46:15 +02:00
|
|
|
(arguments
|
|
|
|
(list
|
|
|
|
#:phases
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
(replace 'check
|
|
|
|
(lambda* (#:key tests? #:allow-other-keys)
|
|
|
|
(when tests?
|
|
|
|
;; Disable isolation so that the package environment can be
|
|
|
|
;; setup without connectivity.
|
|
|
|
(setenv "SOURCE_DATE_EPOCH" "315532800")
|
|
|
|
(substitute* "tests/test_build_api.py"
|
|
|
|
(("\"-m\", \"build\"" all)
|
|
|
|
(string-append all ", \"--no-isolation\"")))
|
|
|
|
(invoke "python" "-m" "pytest" "-vv")))))))
|
2021-04-13 13:14:37 +02:00
|
|
|
(propagated-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-deprecation python-packaging python-setuptools
|
|
|
|
python-tomlkit python-wheel))
|
2021-04-13 13:14:37 +02:00
|
|
|
(native-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-pypa-build python-coverage python-pytest
|
|
|
|
python-pytest-cov python-pytest-mock))
|
2021-04-13 13:14:37 +02:00
|
|
|
(home-page "https://jupyter.org")
|
|
|
|
(synopsis "Jupyter packaging utilities")
|
|
|
|
(description "This package provides tools to help build and install
|
|
|
|
Jupyter Python packages that require a pre-build step that may include
|
|
|
|
JavaScript build steps.")
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
2021-08-29 20:47:03 +02:00
|
|
|
(define-public python-jupyter-server
|
|
|
|
(package
|
|
|
|
(name "python-jupyter-server")
|
|
|
|
(version "1.10.2")
|
|
|
|
(source
|
|
|
|
(origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "jupyter_server" version))
|
|
|
|
(sha256
|
|
|
|
(base32
|
|
|
|
"1gvjbsw5nl94hz02rnkr4g4kkvh9fz7i45vz17hzwyvdpj7bd8yk"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(arguments
|
|
|
|
`(#:phases
|
|
|
|
(modify-phases %standard-phases
|
|
|
|
(replace 'check
|
|
|
|
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
|
|
|
|
(when tests?
|
|
|
|
(add-installed-pythonpath inputs outputs)
|
|
|
|
(let ((home (string-append (getcwd) "/guix-home")))
|
|
|
|
(setenv "HOME" home))
|
|
|
|
;; Add jupyter-server executable to PATH.
|
|
|
|
(setenv "PATH"
|
|
|
|
(string-append (assoc-ref outputs "out") "/bin:"
|
|
|
|
(getenv "PATH")))
|
|
|
|
(with-directory-excursion "jupyter_server"
|
|
|
|
;; The pytest fixtures are only loaded when the file is
|
|
|
|
;; called conftest.py.
|
|
|
|
(rename-file "pytest_plugin.py" "conftest.py")
|
|
|
|
(invoke "pytest" "-vv"
|
|
|
|
;; Fails with internal server error
|
|
|
|
"-k" "not test_list_formats"
|
|
|
|
;; Integration tests require a server.
|
|
|
|
"-m" "not integration_test"))))))))
|
|
|
|
(propagated-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-anyio
|
|
|
|
python-argon2-cffi
|
|
|
|
python-ipython-genutils
|
|
|
|
python-jinja2
|
|
|
|
python-jupyter-client
|
|
|
|
python-jupyter-core
|
|
|
|
python-nbconvert
|
|
|
|
python-nbformat
|
|
|
|
python-prometheus-client
|
|
|
|
python-pyzmq
|
|
|
|
python-requests-unixsocket
|
|
|
|
python-send2trash
|
|
|
|
python-terminado
|
|
|
|
python-tornado-6
|
|
|
|
python-traitlets
|
|
|
|
python-websocket-client))
|
2021-08-29 20:47:03 +02:00
|
|
|
(native-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-coverage
|
|
|
|
python-ipykernel
|
|
|
|
python-pytest
|
|
|
|
python-pytest-console-scripts
|
|
|
|
python-pytest-cov
|
|
|
|
python-pytest-mock
|
|
|
|
python-pytest-tornasync
|
|
|
|
python-requests))
|
2021-08-29 20:47:03 +02:00
|
|
|
(home-page "https://jupyter.org")
|
|
|
|
(synopsis "Core services, APIs, and REST endpoints for Jupyter web applications")
|
|
|
|
(description
|
|
|
|
"This package provides the backend—i.e. core services, APIs, and REST
|
|
|
|
endpoints—to Jupyter web applications.")
|
|
|
|
(license license:expat)))
|
|
|
|
|
2021-04-13 13:14:49 +02:00
|
|
|
(define-public python-jupyterlab-widgets
|
|
|
|
(package
|
|
|
|
(name "python-jupyterlab-widgets")
|
|
|
|
(version "1.0.0")
|
|
|
|
(source
|
|
|
|
(origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "jupyterlab_widgets" version))
|
|
|
|
(sha256
|
|
|
|
(base32
|
|
|
|
"0y7vhhas3qndiypcpcfnhrj9n92v2w4hdc86nn620s9h9nl2j6jw"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(native-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-jupyter-packaging python-setuptools))
|
2021-04-13 13:14:49 +02:00
|
|
|
(home-page "https://github.com/jupyter-widgets/ipywidgets")
|
|
|
|
(synopsis "Interactive widgets for Jupyter Notebooks")
|
|
|
|
(description "ipywidgets, also known as jupyter-widgets or simply widgets,
|
|
|
|
are interactive HTML widgets for Jupyter notebooks and the IPython kernel.")
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
2022-04-13 22:23:39 +02:00
|
|
|
(define-public python-jupyter-server-mathjax
|
|
|
|
(package
|
|
|
|
(name "python-jupyter-server-mathjax")
|
|
|
|
(version "0.2.5")
|
|
|
|
(source
|
|
|
|
(origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "jupyter_server_mathjax" version))
|
|
|
|
(sha256
|
|
|
|
(base32 "1cz7grhj9jih9mgw4xk7a4bqy1fwlb1jsawh6ykxnvpydn76rnb4"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(arguments
|
|
|
|
(list
|
|
|
|
#:phases
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
(replace 'check
|
|
|
|
(lambda* (#:key tests? #:allow-other-keys)
|
|
|
|
(when tests?
|
|
|
|
(with-directory-excursion "/tmp"
|
|
|
|
(invoke "pytest" "-vv"
|
|
|
|
"--pyargs" "jupyter_server_mathjax"))))))))
|
|
|
|
(propagated-inputs (list python-jupyter-server))
|
|
|
|
(native-inputs
|
|
|
|
(list python-jupyter-server
|
|
|
|
python-jupyter-packaging
|
|
|
|
python-pytest
|
|
|
|
python-pytest-tornasync))
|
|
|
|
(home-page "https://jupyter.org")
|
|
|
|
(synopsis "Jupyter Server extension for serving Mathjax")
|
|
|
|
(description "This package provides a Jupyter Server extension for serving
|
|
|
|
Mathjax, the JavaScript display engine for mathematics.")
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
2021-04-13 08:38:47 +02:00
|
|
|
(define-public python-nbclient
|
|
|
|
(package
|
|
|
|
(name "python-nbclient")
|
2022-04-13 17:19:59 +02:00
|
|
|
(version "0.6.0")
|
2021-04-13 08:38:47 +02:00
|
|
|
(source
|
|
|
|
(origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "nbclient" version))
|
|
|
|
(sha256
|
|
|
|
(base32
|
2022-04-13 17:19:59 +02:00
|
|
|
"0cbhs8l8ma5nzm1i4484gsrb7189m1lmniashp929pxsqq1s929z"))))
|
2021-04-13 08:38:47 +02:00
|
|
|
(build-system python-build-system)
|
2022-04-13 17:19:59 +02:00
|
|
|
;; Tests require tools from nbconvert, which would introduces a cycle.
|
2021-04-13 08:38:47 +02:00
|
|
|
(arguments '(#:tests? #false))
|
|
|
|
(propagated-inputs
|
2022-04-13 17:19:59 +02:00
|
|
|
(list python-jupyter-client
|
|
|
|
python-nbformat
|
|
|
|
python-nest-asyncio
|
|
|
|
python-traitlets))
|
2021-04-13 08:38:47 +02:00
|
|
|
(home-page "https://jupyter.org")
|
|
|
|
(synopsis "Client library for executing notebooks")
|
|
|
|
(description
|
2022-04-13 17:19:59 +02:00
|
|
|
"This package provides a client library for executing notebooks.
|
|
|
|
It was formerly known as nbconvert's @code{ExecutePreprocessor.}")
|
2021-04-13 08:38:47 +02:00
|
|
|
(license license:bsd-3)))
|
2021-07-05 09:29:31 +02:00
|
|
|
|
2022-04-14 04:34:05 +02:00
|
|
|
(define-public python-nbdime
|
|
|
|
(package
|
|
|
|
(name "python-nbdime")
|
|
|
|
(version "3.1.1")
|
|
|
|
(source
|
|
|
|
(origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "nbdime" version))
|
|
|
|
(sha256
|
|
|
|
(base32 "12v41lricbg713lzlfcx0cilfm9spndaanhp39q4ydvix4h76xk7"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(arguments
|
|
|
|
(list
|
|
|
|
#:phases
|
|
|
|
#~(modify-phases %standard-phases
|
|
|
|
(add-after 'unpack 'remove-ipython-genutils
|
|
|
|
;; TODO: Remove when a release newer than 3.1.1 is made.
|
|
|
|
(lambda _
|
|
|
|
(substitute* "nbdime/config.py"
|
|
|
|
(("from ipython_genutils import py3compat")
|
|
|
|
"")
|
|
|
|
(("py3compat\\.getcwd")
|
|
|
|
"os.getcwd")))))))
|
|
|
|
(propagated-inputs
|
|
|
|
(list python-colorama
|
|
|
|
python-gitpython
|
|
|
|
python-jinja2
|
|
|
|
python-jupyter-server
|
|
|
|
python-jupyter-server-mathjax
|
|
|
|
python-nbformat
|
|
|
|
python-pygments
|
|
|
|
python-requests
|
|
|
|
python-tornado-6))
|
|
|
|
(native-inputs
|
|
|
|
(list python-jupyter-server
|
|
|
|
python-mock
|
|
|
|
python-notebook
|
|
|
|
python-pytest
|
|
|
|
python-pytest-tornado
|
|
|
|
python-tabulate))
|
|
|
|
(home-page "https://nbdime.readthedocs.io")
|
|
|
|
(synopsis "Diff tools for Jupyter Notebooks")
|
|
|
|
(description "@code{nbdime} provides tools for diffing and merging of
|
|
|
|
Jupyter Notebooks. It includes the following commands:
|
|
|
|
@table @command
|
|
|
|
@item nbdiff compare notebooks in a terminal-friendly way
|
|
|
|
@item nbmerge three-way merge of notebooks with automatic conflict resolution
|
|
|
|
@item nbdiff-web rich rendered diff of notebooks
|
|
|
|
@item nbmerge-web web-based three-way merge tool for notebooks
|
|
|
|
nbshow present a single notebook in a terminal-friendly way
|
|
|
|
@end table")
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
2021-07-05 09:29:31 +02:00
|
|
|
(define-public repo2docker
|
|
|
|
(package
|
|
|
|
(name "repo2docker")
|
2022-01-12 00:59:55 +01:00
|
|
|
(version "2021.08.0")
|
2021-07-05 09:29:31 +02:00
|
|
|
(source (origin
|
|
|
|
(method git-fetch)
|
|
|
|
(uri (git-reference
|
|
|
|
(url "https://github.com/jupyterhub/repo2docker/")
|
2022-01-12 00:59:55 +01:00
|
|
|
(commit version)))
|
2021-07-05 09:29:31 +02:00
|
|
|
(file-name (git-file-name name version))
|
|
|
|
(sha256
|
|
|
|
(base32
|
2022-01-12 00:59:55 +01:00
|
|
|
"111irpghzys0s5ixs8paskz7465cls1sm9d5bg45a15jklcw84a9"))))
|
2021-07-05 09:29:31 +02:00
|
|
|
(outputs '("out" "doc"))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(arguments
|
|
|
|
`(#:phases (modify-phases %standard-phases
|
|
|
|
(add-after 'patch-shebangs 'fix-install-miniforge
|
|
|
|
(lambda* (#:key outputs #:allow-other-keys)
|
|
|
|
(let* ((out (assoc-ref outputs "out")))
|
|
|
|
(substitute* (find-files
|
|
|
|
out "^(install-miniforge|install-nix|\
|
|
|
|
nix-shell-wrapper|repo2docker-entrypoint)")
|
|
|
|
(("^#!(.*)/bin/bash")
|
|
|
|
"#!/bin/bash"))
|
|
|
|
(substitute* (find-files out "^freeze\\.py$")
|
|
|
|
(("^#!(.*)/bin/python3")
|
|
|
|
"#!/bin/python3\n")))))
|
|
|
|
(add-after 'install 'make-doc
|
|
|
|
(lambda* (#:key outputs #:allow-other-keys)
|
|
|
|
(let* ((out (assoc-ref outputs "doc"))
|
|
|
|
(doc (string-append out "/share/doc/"
|
2022-01-12 00:59:55 +01:00
|
|
|
,(package-name this-package))))
|
|
|
|
(setenv "PYTHONPATH"
|
2021-07-05 09:29:31 +02:00
|
|
|
(string-append (getcwd) ":"
|
2021-11-19 23:20:28 +01:00
|
|
|
(getenv "GUIX_PYTHONPATH")))
|
2022-01-12 00:59:55 +01:00
|
|
|
;; Don't treat warnings as errors.
|
|
|
|
(substitute* "docs/Makefile"
|
|
|
|
(("(SPHINXOPTS[[:blank:]]+= )-W" _ group)
|
|
|
|
group))
|
2021-07-05 09:29:31 +02:00
|
|
|
(with-directory-excursion "docs"
|
|
|
|
(invoke "make" "html")
|
|
|
|
(copy-recursively "build/html"
|
|
|
|
(string-append doc "/html")))))))))
|
|
|
|
(inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-traitlets
|
|
|
|
python-toml
|
|
|
|
python-semver
|
|
|
|
python-ruamel.yaml
|
|
|
|
python-requests
|
|
|
|
python-json-logger
|
|
|
|
python-jinja2
|
|
|
|
python-escapism
|
|
|
|
python-docker))
|
2021-07-05 09:29:31 +02:00
|
|
|
(native-inputs
|
2022-01-12 00:59:55 +01:00
|
|
|
(list python-sphinx python-entrypoints python-recommonmark
|
2021-12-13 17:18:24 +01:00
|
|
|
python-sphinxcontrib-autoprogram python-pydata-sphinx-theme))
|
2021-07-05 09:29:31 +02:00
|
|
|
(home-page "https://repo2docker.readthedocs.io/en/latest/index.html#")
|
|
|
|
(synopsis "Generate docker images from repositories")
|
|
|
|
(description
|
|
|
|
"repo2docker fetches a repository (from GitHub, GitLab, Zenodo, Figshare,
|
|
|
|
Dataverse installations, a Git repository or a local directory) and builds a
|
|
|
|
container image in which the code can be executed. The image build process is
|
|
|
|
based on the configuration files found in the repository. repo2docker can be
|
|
|
|
used to explore a repository locally by building and executing the constructed
|
|
|
|
image of the repository, or as a means of building images that are pushed to a
|
|
|
|
Docker registry.")
|
|
|
|
(license license:bsd-3)))
|
2021-07-21 11:48:07 +02:00
|
|
|
|
|
|
|
(define-public python-bash-kernel
|
|
|
|
(package
|
|
|
|
(name "python-bash-kernel")
|
|
|
|
(version "0.7.2")
|
|
|
|
(source (origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "bash_kernel" version))
|
|
|
|
(sha256
|
|
|
|
(base32
|
|
|
|
"0w0nbr3iqqsgpk83rgd0f5b02462bkyj2n0h6i9dwyc1vpnq9350"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(arguments
|
|
|
|
`(#:tests? #f
|
|
|
|
#:phases
|
|
|
|
(modify-phases %standard-phases
|
|
|
|
(add-after 'unpack 'bash-references
|
|
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
|
|
(substitute* "bash_kernel/kernel.py"
|
|
|
|
(("\"bash\"")
|
|
|
|
(string-append "\"" (assoc-ref inputs "bash") "/bin/bash\""))
|
|
|
|
(("\\['bash', ")
|
|
|
|
(string-append "['" (assoc-ref inputs "bash") "/bin/bash', ")))
|
|
|
|
#t))
|
|
|
|
(add-after 'install 'install-kernelspec
|
|
|
|
(lambda* (#:key outputs #:allow-other-keys)
|
|
|
|
(let ((out (assoc-ref outputs "out")))
|
|
|
|
(setenv "HOME" "/tmp")
|
|
|
|
(invoke "python" "-m" "bash_kernel.install" "--prefix" out)
|
|
|
|
#t))))))
|
|
|
|
(inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list bash))
|
2021-07-21 11:48:07 +02:00
|
|
|
(propagated-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-pexpect python-ipykernel python-jupyter-client))
|
2021-07-21 11:48:07 +02:00
|
|
|
(home-page "https://github.com/takluyver/bash_kernel")
|
|
|
|
(synopsis "Jupyter kernel for Bash")
|
|
|
|
(description "A bash shell kernel for Jupyter.")
|
|
|
|
(license license:expat)))
|
2021-07-21 13:31:08 +02:00
|
|
|
|
|
|
|
(define-public python-sparqlkernel
|
|
|
|
(package
|
|
|
|
(name "python-sparqlkernel")
|
|
|
|
(version "1.3.0")
|
|
|
|
(source (origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "sparqlkernel" version))
|
|
|
|
(sha256
|
|
|
|
(base32
|
|
|
|
"004v22nyi5cnpxq4fiws89p7i5wcnzv45n3n70axdd6prh6rkapx"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(arguments
|
|
|
|
`(#:tests? #f
|
|
|
|
#:phases
|
|
|
|
(modify-phases %standard-phases
|
|
|
|
(add-after 'unpack 'no-custom-css
|
|
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
|
|
(substitute* "sparqlkernel/install.py"
|
|
|
|
(("install_custom_css\\( destd, PKGNAME \\)") ""))
|
|
|
|
#t))
|
|
|
|
(add-after 'install 'install-kernelspec
|
|
|
|
(lambda* (#:key inputs outputs #:allow-other-keys)
|
|
|
|
(let ((out (assoc-ref outputs "out")))
|
|
|
|
(setenv "HOME" "/tmp")
|
|
|
|
(add-installed-pythonpath inputs outputs)
|
|
|
|
(invoke
|
|
|
|
(string-append out "/bin/jupyter-sparqlkernel")
|
|
|
|
"install"
|
|
|
|
(string-append "--InstallKernelSpec.prefix=" out))
|
|
|
|
#t))))))
|
|
|
|
(native-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-traitlets python-jupyter-client python-notebook
|
|
|
|
python-ipykernel python-html5lib-0.9))
|
2021-07-21 13:31:08 +02:00
|
|
|
(propagated-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-sparqlwrapper python-pygments))
|
2021-07-21 13:31:08 +02:00
|
|
|
(home-page "https://github.com/paulovn/sparql-kernel")
|
|
|
|
(synopsis "Jupyter kernel for SPARQL")
|
|
|
|
(description "This module installs a Jupyter kernel for SPARQL. It allows
|
|
|
|
sending queries to an SPARQL endpoint and fetching & presenting the results in
|
|
|
|
a notebook.")
|
|
|
|
(license license:bsd-3)))
|
2021-08-30 18:28:43 +02:00
|
|
|
|
2022-05-06 10:48:08 +02:00
|
|
|
(define-public python-ipympl
|
|
|
|
(package
|
|
|
|
(name "python-ipympl")
|
|
|
|
(version "0.9.1")
|
|
|
|
(source
|
|
|
|
(origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "ipympl" version))
|
|
|
|
(sha256
|
|
|
|
(base32 "11rppjdqzgs4pfiq8gww5xkpbk21fp86vvv839v56b9rqq06j2b4"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(propagated-inputs
|
|
|
|
(list python-ipython
|
|
|
|
python-ipython-genutils
|
|
|
|
python-ipywidgets
|
|
|
|
python-matplotlib
|
|
|
|
python-numpy
|
|
|
|
python-pillow
|
|
|
|
python-traitlets))
|
|
|
|
(native-inputs
|
|
|
|
(list python-jupyter-packaging))
|
|
|
|
(home-page "https://matplotlib.org/ipympl/")
|
|
|
|
(synopsis "Matplotlib Jupyter Extension")
|
|
|
|
(description "Leveraging the Jupyter interactive widgets framework, ipympl
|
|
|
|
enables the interactive features of matplotlib in the Jupyter notebook and in
|
|
|
|
JupyterLab.")
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
2022-05-06 11:32:59 +02:00
|
|
|
(define-public python-ipydatawidgets
|
|
|
|
(package
|
|
|
|
(name "python-ipydatawidgets")
|
|
|
|
(version "4.2.0")
|
|
|
|
(source
|
|
|
|
(origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "ipydatawidgets" version))
|
|
|
|
(sha256
|
|
|
|
(base32 "1g65nzlsb1cipmvh9v27b22kkmzwvg8zbf32hmg1c25mb65vbr6h"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(arguments
|
|
|
|
'(#:phases
|
|
|
|
(modify-phases %standard-phases
|
|
|
|
(replace 'check
|
|
|
|
(lambda* (#:key tests? #:allow-other-keys)
|
|
|
|
(when tests?
|
|
|
|
(invoke "pytest" "-v")))))))
|
|
|
|
(propagated-inputs
|
|
|
|
(list python-ipywidgets python-numpy python-six python-traittypes))
|
|
|
|
(native-inputs
|
|
|
|
(list python-jupyter-packaging
|
|
|
|
python-nbval
|
|
|
|
python-pytest
|
|
|
|
python-pytest-cov))
|
|
|
|
(home-page "https://github.com/vidartf/ipydatawidgets")
|
|
|
|
(synopsis "Widgets to help facilitate reuse of large datasets across widgets")
|
|
|
|
(description
|
|
|
|
"This package provides a set of widgets to help facilitate reuse of large
|
|
|
|
datasets across widgets.")
|
|
|
|
(license license:bsd-3)))
|
|
|
|
|
2021-08-30 18:28:43 +02:00
|
|
|
(define-public python-voila
|
|
|
|
(package
|
|
|
|
(name "python-voila")
|
|
|
|
(version "0.2.10")
|
|
|
|
(source
|
|
|
|
(origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (pypi-uri "voila" version))
|
|
|
|
(sha256
|
|
|
|
(base32
|
|
|
|
"0krfc95yjlhjdmrsladhy6lpf4xs1zw49nmkyl4pkykndglvwa1m"))))
|
|
|
|
(build-system python-build-system)
|
|
|
|
(propagated-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-jupyter-client python-jupyter-server python-nbclient
|
|
|
|
python-nbconvert))
|
2021-08-30 18:28:43 +02:00
|
|
|
(native-inputs
|
2021-12-13 17:18:24 +01:00
|
|
|
(list python-ipywidgets
|
|
|
|
python-jupyter-packaging
|
|
|
|
python-matplotlib
|
|
|
|
python-mock
|
|
|
|
python-pytest
|
|
|
|
python-pytest-tornasync
|
|
|
|
python-setuptools
|
|
|
|
python-tornado-6))
|
2021-08-30 18:28:43 +02:00
|
|
|
(home-page "https://github.com/voila-dashboards/voila")
|
|
|
|
(synopsis "Render live Jupyter notebooks with interactive widgets")
|
|
|
|
(description
|
|
|
|
"Voilà turns Jupyter notebooks into standalone web applications. Unlike
|
|
|
|
the usual HTML-converted notebooks, each user connecting to the Voilà tornado
|
|
|
|
application gets a dedicated Jupyter kernel which can execute the callbacks to
|
|
|
|
changes in Jupyter interactive widgets.")
|
|
|
|
(license license:bsd-3)))
|