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gnu: bedtools-2.18: Use gexp.

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* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Use gexp.
[native-inputs]: Drop package label.
This commit is contained in:
Ricardo Wurmus 2022-12-14 22:47:43 +01:00
parent 7b8cac86ba
commit 1689215a30
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GPG key ID: 197A5888235FACAC
1 changed files with 20 additions and 19 deletions
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39
gnu/packages/bioinformatics.scm
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@ -482,26 +482,27 @@ BED, GFF/GTF, VCF.")
(base32
"11rvca19ncg03kxd0wzlfx5ws7r3nisd0z8s9j9n182d8ksp2pxz"))))
(arguments
'(#:test-target "test"
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'compatibility
(lambda _
(substitute* "src/utils/fileType/FileRecordTypeChecker.h"
(("static const float PERCENTAGE")
"static constexpr float PERCENTAGE"))
(substitute* "src/utils/general/DualQueue.h"
(("template <class T, template<class T> class CompareFunc>")
"template <class T, template<class U> class CompareFunc>"))))
(delete 'configure)
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin/")))
(for-each (lambda (file)
(install-file file bin))
(find-files "bin" ".*"))))))))
(list
#:test-target "test"
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'compatibility
(lambda _
(substitute* "src/utils/fileType/FileRecordTypeChecker.h"
(("static const float PERCENTAGE")
"static constexpr float PERCENTAGE"))
(substitute* "src/utils/general/DualQueue.h"
(("template <class T, template<class T> class CompareFunc>")
"template <class T, template<class U> class CompareFunc>"))))
(delete 'configure)
(replace 'install
(lambda _
(let ((bin (string-append #$output "/bin/")))
(for-each (lambda (file)
(install-file file bin))
(find-files "bin" ".*"))))))))
(native-inputs
`(("python" ,python-wrapper)))
(list python-wrapper))
(inputs
(list samtools zlib))))