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gnu: grocsvs: Remove package.
This package depends on Python 2 and doesn't build anymore. Upstream doesn't seem active, but if they ever port it to Python 3, they should let people know here: https://github.com/grocsvs/grocsvs/issues/6. * gnu/packages/bioinformatics.scm (grocsvs): Delete.
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@ -15607,44 +15607,3 @@ biological processes. SBML is useful for models of metabolism, cell
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signaling, and more. It continues to be evolved and expanded by an
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international community.")
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(license license:lgpl2.1+)))
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(define-public grocsvs
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;; The last release is out of date and new features have been added.
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(let ((commit "ecd956a65093a0b2c41849050e4512d46fecea5d")
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(revision "1"))
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(package
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(name "grocsvs")
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(version (git-version "0.2.6.1" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/grocsvs/grocsvs")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "14505725gr7qxc17cxxf0k6lzcwmgi64pija4mwf29aw70qn35cc"))
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(patches (search-patches "grocsvs-dont-use-admiral.patch"))))
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(build-system python-build-system)
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(arguments
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`(#:tests? #f ; No test suite.
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#:python ,python-2)) ; Only python-2 supported.
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(inputs
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`(("python2-h5py" ,python2-h5py)
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("python2-ipython-cluster-helper" ,python2-ipython-cluster-helper)
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("python2-networkx" ,python2-networkx)
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("python2-psutil" ,python2-psutil)
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("python2-pandas" ,python2-pandas)
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("python2-pybedtools" ,python2-pybedtools)
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("python2-pyfaidx" ,python2-pyfaidx)
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("python2-pygraphviz" ,python2-pygraphviz)
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("python2-pysam" ,python2-pysam)
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("python2-scipy" ,python2-scipy)))
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(home-page "https://github.com/grocsvs/grocsvs")
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(synopsis "Genome-wide reconstruction of complex structural variants")
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(description
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"@dfn{Genome-wide Reconstruction of Complex Structural Variants}
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(GROC-SVs) is a software pipeline for identifying large-scale structural
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variants, performing sequence assembly at the breakpoints, and reconstructing
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the complex structural variants using the long-fragment information from the
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10x Genomics platform.")
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(license license:expat))))
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