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gnu: Add r-biocneighbors.
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
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@ -939,3 +939,32 @@ demultiplexed, i.e. assigned to their original reference barcode.")
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of Risso et al. (2014) for the normalization of RNA-Seq read counts between
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samples.")
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(license license:artistic2.0)))
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(define-public r-biocneighbors
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(package
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(name "r-biocneighbors")
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(version "1.0.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "BiocNeighbors" version))
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(sha256
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(base32
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"1fsb96acidlxwf0h65xv7fnwdi58ckmq00gmwykrlawh88wgn1ll"))))
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(properties `((upstream-name . "BiocNeighbors")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocparallel" ,r-biocparallel)
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("r-rcpp" ,r-rcpp)
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("r-rcppannoy" ,r-rcppannoy)
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("r-s4vectors" ,r-s4vectors)))
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(home-page "https://bioconductor.org/packages/BiocNeighbors")
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(synopsis "Nearest Neighbor Detection for Bioconductor packages")
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(description
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"This package implements exact and approximate methods for nearest
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neighbor detection, in a framework that allows them to be easily switched
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within Bioconductor packages or workflows. The exact algorithm is implemented
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using pre-clustering with the k-means algorithm. Functions are also provided
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to search for all neighbors within a given distance. Parallelization is
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achieved for all methods using the BiocParallel framework.")
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(license license:gpl3)))
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