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gnu: python-rpy2: Update to 3.0.4-1.19868a8.
* gnu/packages/statistics.scm (python-rpy2): Update to 3.0.4-1.19868a8. [source]: Fetch from repository. [propagated-inputs]: Add python-cffi, python-numpy, python-pandas, python-ipython, and python-tzlocal. [native-inputs]: Add python-pytest. [arguments]: Set TZ variable and use pytest to run the tests.
This commit is contained in:
Ricardo Wurmus
parent
06e1ecbf17
commit
29fe71152f
1 changed files with 68 additions and 53 deletions
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@ -57,6 +57,7 @@
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#:use-module (gnu packages icu4c)
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#:use-module (gnu packages image)
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#:use-module (gnu packages java)
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#:use-module (gnu packages libffi)
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#:use-module (gnu packages machine-learning)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages multiprecision)
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@ -5765,62 +5766,76 @@ as a boxplot function.")
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(license license:lgpl3+)))
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(define-public python-rpy2
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(package
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(name "python-rpy2")
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(version "2.9.4")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "rpy2" version))
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(sha256
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(base32
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"0bl1d2qhavmlrvalir9hmkjh74w21vzkvc2sg3cbb162s10zfmxy"))))
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(build-system python-build-system)
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(arguments
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'(#:modules ((ice-9 ftw)
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(srfi srfi-1)
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(srfi srfi-26)
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(guix build utils)
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(guix build python-build-system))
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#:phases
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(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key outputs inputs #:allow-other-keys)
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(let ((cwd (getcwd)))
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(setenv "PYTHONPATH"
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(string-append cwd "/build/"
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(find (cut string-prefix? "lib" <>)
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(scandir (string-append cwd "/build")))
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":"
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(getenv "PYTHONPATH"))))
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(invoke "python" "-m" "rpy2.tests" "-v"))))))
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(propagated-inputs
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`(("python-six" ,python-six)
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("python-jinja2" ,python-jinja2)
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("python-pytz" ,python-pytz)))
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(inputs
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`(("readline" ,readline)
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("icu4c" ,icu4c)
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("pcre" ,pcre)
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("r-minimal" ,r-minimal)
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("r-survival" ,r-survival)
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("r-ggplot2" ,r-ggplot2)
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("r-rsqlite" ,r-rsqlite)
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("r-dplyr" ,r-dplyr)
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("r-dbplyr" ,r-dbplyr)
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("python-numpy" ,python-numpy)))
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(native-inputs
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`(("zlib" ,zlib)))
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(home-page "https://rpy2.bitbucket.io/")
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(synopsis "Python interface to the R language")
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(description "rpy2 is a redesign and rewrite of rpy. It is providing a
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;; We need to take this changeset instead of the RELEASE_3_0_4 tag, because
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;; it fixes a regression when using ggplot 3.2.0.
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(let ((changeset "19868a8")
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(revision "1"))
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(package
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(name "python-rpy2")
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(version (git-version "3.0.4" revision changeset))
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(source
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(origin
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(method hg-fetch)
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(uri (hg-reference
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(url "https://bitbucket.org/rpy2/rpy2")
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(changeset changeset)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1bb0wslcbj3wjvyk3jb9yyzdi6adfqh5vfgcvn22dyzxzbhcs8kk"))))
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(build-system python-build-system)
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(arguments
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'(#:modules ((ice-9 ftw)
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(srfi srfi-1)
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(srfi srfi-26)
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(guix build utils)
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(guix build python-build-system))
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#:phases
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(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key outputs inputs #:allow-other-keys)
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(let ((cwd (getcwd)))
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(setenv "TZ" "UTC")
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(setenv "PYTHONPATH"
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(string-append cwd "/build/"
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(find (cut string-prefix? "lib" <>)
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(scandir (string-append cwd "/build")))
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":"
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(getenv "PYTHONPATH"))))
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(invoke "pytest" "-v" "rpy/tests/"))))))
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(propagated-inputs
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`(("python-cffi" ,python-cffi)
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("python-six" ,python-six)
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("python-jinja2" ,python-jinja2)
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("python-numpy" ,python-numpy)
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("python-pandas" ,python-pandas)
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("python-pytz" ,python-pytz)
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("python-ipython" ,python-ipython)
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("python-tzlocal" ,python-tzlocal)))
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(inputs
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`(("readline" ,readline)
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("icu4c" ,icu4c)
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("pcre" ,pcre)
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("r-minimal" ,r-minimal)
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("r-survival" ,r-survival)
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("r-ggplot2" ,r-ggplot2)
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("r-rsqlite" ,r-rsqlite)
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("r-dplyr" ,r-dplyr)
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("r-dbplyr" ,r-dbplyr)
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("python-numpy" ,python-numpy)))
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(native-inputs
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`(("zlib" ,zlib)
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("python-pytest" ,python-pytest)))
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(home-page "https://rpy2.bitbucket.io/")
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(synopsis "Python interface to the R language")
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(description "rpy2 is a redesign and rewrite of rpy. It is providing a
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low-level interface to R from Python, a proposed high-level interface,
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including wrappers to graphical libraries, as well as R-like structures and
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functions.")
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;; Any of these licenses can be picked for the R interface. The whole
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;; project is released under GPLv2+ according to the license declaration
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;; in "setup.py".
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(license (list license:mpl2.0 license:gpl2+ license:lgpl2.1+))))
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;; Any of these licenses can be picked for the R interface. The whole
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;; project is released under GPLv2+ according to the license declaration
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;; in "setup.py".
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(license (list license:mpl2.0 license:gpl2+ license:lgpl2.1+)))))
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(define-public java-jdistlib
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(package
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