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gnu: Add hdf-java.
* gnu/packages/maths.scm (hdf-java): New variable.
This commit is contained in:
Thomas Danckaert
parent
88f256a192
commit
2fd26d055a
1 changed files with 120 additions and 1 deletions
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@ -14,7 +14,7 @@
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;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
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;;; Copyright © 2016, 2017 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
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;;; Copyright © 2016 Thomas Danckaert <post@thomasdanckaert.be>
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;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
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;;; Copyright © 2017 Paul Garlick <pgarlick@tourbillion-technology.com>
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;;; Copyright © 2017 ng0 <contact.ng0@cryptolab.net>
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;;; Copyright © 2017 Ben Woodcroft <donttrustben@gmail.com>
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@ -70,6 +70,7 @@
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#:use-module (gnu packages graphviz)
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#:use-module (gnu packages gtk)
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#:use-module (gnu packages image)
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#:use-module (gnu packages java)
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#:use-module (gnu packages less)
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#:use-module (gnu packages lisp)
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#:use-module (gnu packages logging)
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@ -743,6 +744,124 @@ extremely large and complex data collections.")
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(license (license:x11-style
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"http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING"))))
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(define-public hdf-java
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(package
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(name "hdf-java")
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(version "3.3.2")
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(source
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(origin
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(method url-fetch)
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(uri (string-append
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"http://www.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfjni-"
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version "/src/CMake-hdfjava-" version ".tar.gz"))
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(sha256
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(base32 "0m1gp2aspcblqzmpqbdpfp6giskws85ds6p5gz8sx7asyp7wznpr"))
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(modules '((guix build utils)))
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(snippet ; Make sure we don't use the bundled sources and binaries.
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`(begin
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(for-each delete-file
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(list "SZip.tar.gz" "ZLib.tar.gz" "JPEG8d.tar.gz"
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"HDF4.tar.gz" "HDF5.tar.gz"))
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(delete-file-recursively ,(string-append "hdfjava-" version "/lib"))))))
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(build-system gnu-build-system)
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(native-inputs
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`(("jdk" ,icedtea "jdk")
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("automake" ,automake) ; For up to date 'config.guess' and 'config.sub'.
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;; For tests:
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("hamcrest-core" ,java-hamcrest-core)
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("junit" ,java-junit)
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("slf4j-simple" ,java-slf4j-simple)))
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(inputs
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`(("hdf4" ,hdf4)
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("hdf5" ,hdf5)
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("zlib" ,zlib)
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("libjpeg" ,libjpeg)
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("slf4j-api" ,java-slf4j-api)))
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(arguments
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`(#:configure-flags
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(list (string-append "--target=" ,(or (%current-target-system) (%current-system)))
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(string-append "--with-jdk=" (assoc-ref %build-inputs "jdk") "/include,"
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(assoc-ref %build-inputs "jdk") "/lib" )
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(string-append "--with-hdf4=" (assoc-ref %build-inputs "hdf4") "/lib")
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(string-append "--with-hdf5=" (assoc-ref %build-inputs "hdf5") "/lib"))
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#:make-flags
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(list (string-append "HDFLIB=" (assoc-ref %build-inputs "hdf4") "/lib")
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(string-append "HDF5LIB=" (assoc-ref %build-inputs "hdf5") "/lib")
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(string-append "ZLIB=" (assoc-ref %build-inputs "zlib") "/lib/libz.so")
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(string-append "JPEGLIB="
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(assoc-ref %build-inputs "libjpeg") "/lib/libjpeg.so")
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"LLEXT=so")
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#:phases
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(modify-phases %standard-phases
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(add-before 'configure 'chdir-to-source
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(lambda _ (chdir ,(string-append "hdfjava-" version))))
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(add-before 'configure 'patch-build
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(substitute* "configure"
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(("COPT=\"") "COPT=\"-O2 ") ; CFLAGS is ignored in Makefiles
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(("/bin/cat") (which "cat")))
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;; Set classpath for compilation
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(substitute* '("hdf/hdf5lib/Makefile.in"
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"hdf/hdf5lib/exceptions/Makefile.in"
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"hdf/hdflib/Makefile.in")
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(("\\$\\(TOP\\)/lib/slf4j-api-1\\.7\\.5\\.jar")
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(string-append (assoc-ref inputs "slf4j-api")
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"/share/java/slf4j-api.jar")))
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;; Replace outdated config.sub and config.guess:
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(with-directory-excursion "config"
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(for-each (lambda (file)
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(copy-file
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(string-append (assoc-ref inputs "automake")
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"/share/automake-1.15/" file) file))
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'("config.sub" "config.guess")))
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(mkdir-p (string-append (assoc-ref outputs "out")))
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;; Set classpath for tests
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(let* ((build-dir (getcwd))
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(lib (string-append build-dir "/lib"))
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(jhdf (string-append lib "/jhdf.jar"))
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(jhdf5 (string-append lib "/jhdf5.jar"))
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(testjars
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(map (lambda (i)
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(string-append (assoc-ref inputs i)
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"/share/java/" i ".jar"))
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'("junit" "hamcrest-core" "slf4j-api" "slf4j-simple")))
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(class-path
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(string-join `("." ,build-dir ,jhdf ,jhdf5 ,@testjars) ":")))
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(substitute* '("test/hdf5lib/Makefile.in"
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"test/hdf5lib/junit.sh.in"
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"examples/runExample.sh.in")
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(("/usr/bin/test")
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(string-append (assoc-ref inputs "coreutils")
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"/bin/test"))
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(("/usr/bin/uname")
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(string-append (assoc-ref inputs "coreutils")
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"/bin/uname"))
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(("CLASSPATH=[^\n]*")
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(string-append "CLASSPATH=" class-path)))
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(setenv "CLASSPATH" class-path))
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#t))
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(add-before 'check 'build-examples
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(lambda _
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(zero? (apply system* `("javac"
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,@(find-files "examples" ".*\\.java")))))))
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#:parallel-build? #f
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#:parallel-tests? #f ))
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(home-page "https://support.hdfgroup.org/products/java")
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(synopsis "Java interface for the HDF4 and HDF5 libraries")
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(description "Java HDF Interface (JHI) and Java HDF5 Interface (JHI5) use
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the Java Native Interface to wrap the HDF4 and HDF5 libraries, which are
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implemented in C.")
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;; BSD-style license:
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(license (license:x11-style
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"https://support.hdfgroup.org/ftp/HDF5/hdf-java\
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/current/src/unpacked/COPYING"))))
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(define-public hdf-eos2
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(package
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(name "hdf-eos2")
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