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gnu: r-copyhelper: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here...
* gnu/packages/bioconductor.scm (r-copyhelper): ...to here.
[source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.
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zimoun 2021-05-21 22:26:20 +02:00 committed by Ricardo Wurmus
parent 31e50e1f48
commit 36cb01066c
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2 changed files with 24 additions and 26 deletions
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24
gnu/packages/bioconductor.scm
View file

@ -1128,6 +1128,30 @@ average profile and heatmap of peaks binding to TSS regions, genomic
annotation, distance to TSS, and overlap of peaks or genes.")
(license license:artistic2.0)))
(define-public r-copyhelper
(package
(name "r-copyhelper")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "CopyhelpeR" version 'experiment))
(sha256
(base32
"0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
(properties `((upstream-name . "CopyhelpeR")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/CopyhelpeR/")
(synopsis "Helper files for CopywriteR")
(description
"This package contains the helper files that are required to run the
Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
mm10. In addition, it contains a blacklist filter to remove regions that
display copy number variation. Files are stored as GRanges objects from the
GenomicRanges Bioconductor package.")
(license license:gpl2)))
(define-public r-genelendatabase
(package
(name "r-genelendatabase")

26
gnu/packages/bioinformatics.scm
View file

@ -8486,32 +8486,6 @@ analysis, variant tools is project based and provides a whole set of tools to
manipulate and analyze genetic variants.")
(license license:gpl3+)))
(define-public r-copyhelper
(package
(name "r-copyhelper")
(version "1.6.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://bioconductor.org/packages/release/"
"data/experiment/src/contrib/CopyhelpeR_"
version ".tar.gz"))
(sha256
(base32
"0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"))))
(properties `((upstream-name . "CopyhelpeR")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/CopyhelpeR/")
(synopsis "Helper files for CopywriteR")
(description
"This package contains the helper files that are required to run the
Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content
and mappability files for the reference genomes hg18, hg19, hg38, mm9 and
mm10. In addition, it contains a blacklist filter to remove regions that
display copy number variation. Files are stored as GRanges objects from the
GenomicRanges Bioconductor package.")
(license license:gpl2)))
(define-public r-copywriter
(package
(name "r-copywriter")