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gnu: r-rhdf5lib: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.0. [source]: Add snippet to remove bundled binaries. [arguments]: Replace references to hdf5 with references to hdf5-1.10. [native-inputs]: Likewise. [propagated-inputs]: Replace hdf5 with hdf5-1.10.
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1 changed files with 11 additions and 5 deletions
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@ -10830,14 +10830,20 @@ block processing.")
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(define-public r-rhdf5lib
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(package
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(name "r-rhdf5lib")
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(version "1.2.1")
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(version "1.4.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "Rhdf5lib" version))
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(sha256
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(base32
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"1y59acac6v8hrhv84gghn9ifsni9xxxacaj177rrl4frmkrz4x3c"))))
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"01gpz780g850ql20b2ql6pvr678ydk4nq4sn5iiih94a4crb9lz1"))
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(modules '((guix build utils)))
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(snippet
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'(begin
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;; Delete bundled binaries
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(delete-file-recursively "src/winlib/")
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#t))))
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(properties `((upstream-name . "Rhdf5lib")))
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(build-system r-build-system)
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(arguments
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@ -10854,7 +10860,7 @@ block processing.")
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"'%s/libhdf5.a %s/libhdf5.a -lz'"))
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(with-directory-excursion "src"
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(invoke "tar" "xvf" (assoc-ref inputs "hdf5-source"))
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(rename-file (string-append "hdf5-" ,(package-version hdf5))
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(rename-file (string-append "hdf5-" ,(package-version hdf5-1.10))
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"hdf5")
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;; Remove timestamp and host system information to make
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;; the build reproducible.
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@ -10883,9 +10889,9 @@ block processing.")
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(inputs
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`(("zlib" ,zlib)))
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(propagated-inputs
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`(("hdf5" ,hdf5)))
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`(("hdf5" ,hdf5-1.10)))
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(native-inputs
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`(("hdf5-source" ,(package-source hdf5))))
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`(("hdf5-source" ,(package-source hdf5-1.10))))
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(home-page "https://bioconductor.org/packages/Rhdf5lib")
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(synopsis "HDF5 library as an R package")
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(description "This package provides C and C++ HDF5 libraries for use in R
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