mirror of
git://git.savannah.gnu.org/guix.git
synced 2023-12-14 03:33:07 +01:00
gnu: Add r-airpart.
* gnu/packages/bioconductor.scm (r-airpart): New variable.
This commit is contained in:
parent
3d16f748fb
commit
49b696cb58
1 changed files with 47 additions and 0 deletions
|
@ -2082,6 +2082,53 @@ using the linear model features implemented in limma. Standard Bioconductor
|
|||
objects are used so that other packages could be used as well.")
|
||||
(license license:gpl3)))
|
||||
|
||||
(define-public r-airpart
|
||||
(package
|
||||
(name "r-airpart")
|
||||
(version "1.4.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "airpart" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06"))))
|
||||
(properties `((upstream-name . "airpart")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
(list r-apeglm
|
||||
r-clue
|
||||
r-complexheatmap
|
||||
r-dplyr
|
||||
r-dynamictreecut
|
||||
r-emdbook
|
||||
r-forestplot
|
||||
r-ggplot2
|
||||
r-lpsolve
|
||||
r-matrixstats
|
||||
r-mclust
|
||||
r-pbapply
|
||||
r-plyr
|
||||
r-rcolorbrewer
|
||||
r-rlang
|
||||
r-s4vectors
|
||||
r-scater
|
||||
r-singlecellexperiment
|
||||
r-smurf
|
||||
r-summarizedexperiment))
|
||||
(native-inputs (list r-knitr))
|
||||
(home-page "https://bioconductor.org/packages/airpart")
|
||||
(synopsis "Differential cell-type-specific allelic imbalance")
|
||||
(description
|
||||
"The airpart package identifies sets of genes displaying differential
|
||||
cell-type-specific allelic imbalance across cell types or states, utilizing
|
||||
single-cell allelic counts. It makes use of a generalized fused lasso with
|
||||
binomial observations of allelic counts to partition cell types by their
|
||||
allelic imbalance. Alternatively, a nonparametric method for partitioning
|
||||
cell types is offered. The package includes a number of visualizations and
|
||||
quality control functions for examining single cell allelic imbalance
|
||||
datasets.")
|
||||
(license license:gpl2)))
|
||||
|
||||
(define-public r-amountain
|
||||
(package
|
||||
(name "r-amountain")
|
||||
|
|
Loading…
Reference in a new issue