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gnu: r-karyoploter: Update to 1.14.0.

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* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.14.0.
[propagated-inputs]: Add r-genomicfeatures.
[native-inputs]: Add r-knitr.
This commit is contained in:
Ricardo Wurmus 2020-06-13 00:28:45 +02:00
parent 1e37caca52
commit 6e2dc9e385
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1 changed files with 16 additions and 13 deletions
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gnu/packages/bioconductor.scm
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@ -2701,29 +2701,32 @@ gene and isoform level using RNA-seq data")
(define-public r-karyoploter
(package
(name "r-karyoploter")
(version "1.12.4")
(version "1.14.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "karyoploteR" version))
(sha256
(base32
"03jmfgmw35hrgn3pc5lq6pblzhfx9fp4l6dx50rp303lr7kjxp9v"))))
"0h0gk4xd95k5phy6qcsv7j931d7gk3p24i2fg4mz5dsk110lpifs"))))
(build-system r-build-system)
(propagated-inputs
`(("r-regioner" ,r-regioner)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-memoise" ,r-memoise)
("r-rtracklayer" ,r-rtracklayer)
("r-genomeinfodb" ,r-genomeinfodb)
("r-s4vectors" ,r-s4vectors)
`(("r-annotationdbi" ,r-annotationdbi)
("r-bamsignals" ,r-bamsignals)
("r-bezier" ,r-bezier)
("r-biovizbase" ,r-biovizbase)
("r-digest" ,r-digest)
("r-bezier" ,r-bezier)
("r-bamsignals" ,r-bamsignals)
("r-annotationdbi" ,r-annotationdbi)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-memoise" ,r-memoise)
("r-regioner" ,r-regioner)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-variantannotation" ,r-variantannotation)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/karyoploteR/")
(synopsis "Plot customizable linear genomes displaying arbitrary data")
(description "This package creates karyotype plots of arbitrary genomes and