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gnu: r-nmf: Move to (gnu packages bioconductor).

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* gnu/packages/statistics.scm (r-nmf): Move this variable from here...
* gnu/packages/bioconductor.scm (r-nmf): ...to here.
This commit is contained in:
Ricardo Wurmus 2020-02-19 18:46:22 +01:00
parent bfb6c393b9
commit 7c9d8a5d58
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2 changed files with 41 additions and 40 deletions
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41
gnu/packages/bioconductor.scm
View file

@ -722,6 +722,47 @@ the weighted combination of published signatures that, when summed, most
closely reconstructs the mutational profile.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-nmf
(package
(name "r-nmf")
(version "0.21.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "NMF" version))
(sha256
(base32
"1qq25n3k5sgh3srlshb3ic6q92s12c1ilqf5cd5anvq6cqfchc1v"))))
(properties `((upstream-name . "NMF")))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
("r-bigmemory" ,r-bigmemory) ; suggested
("r-synchronicity" ,r-synchronicity) ; suggested
("r-colorspace" ,r-colorspace)
("r-digest" ,r-digest)
("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-ggplot2" ,r-ggplot2)
("r-gridbase" ,r-gridbase)
("r-pkgmaker" ,r-pkgmaker)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-registry" ,r-registry)
("r-reshape2" ,r-reshape2)
("r-rngtools" ,r-rngtools)
("r-stringr" ,r-stringr)))
(home-page "http://renozao.github.io/NMF")
(synopsis "Algorithms and framework for nonnegative matrix factorization")
(description
"This package provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published
algorithms and seeding methods, and provides a framework to test, develop and
plug new or custom algorithms. Most of the built-in algorithms have been
optimized in C++, and the main interface function provides an easy way of
performing parallel computations on multicore machines.")
(license license:gpl2+)))
(define-public r-do-db
(package
(name "r-do-db")

40
gnu/packages/statistics.scm
View file

@ -3420,46 +3420,6 @@ memory-mapped files.")
;; Users can choose either LGPLv3 or ASL2.0.
(license (list license:lgpl3 license:asl2.0))))
(define-public r-nmf
(package
(name "r-nmf")
(version "0.21.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "NMF" version))
(sha256
(base32
"1qq25n3k5sgh3srlshb3ic6q92s12c1ilqf5cd5anvq6cqfchc1v"))))
(properties `((upstream-name . "NMF")))
(build-system r-build-system)
(propagated-inputs
`(("r-cluster" ,r-cluster)
("r-bigmemory" ,r-bigmemory) ; suggested
("r-synchronicity" ,r-synchronicity) ; suggested
("r-colorspace" ,r-colorspace)
("r-digest" ,r-digest)
("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-ggplot2" ,r-ggplot2)
("r-gridbase" ,r-gridbase)
("r-pkgmaker" ,r-pkgmaker)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-registry" ,r-registry)
("r-reshape2" ,r-reshape2)
("r-rngtools" ,r-rngtools)
("r-stringr" ,r-stringr)))
(home-page "http://renozao.github.io/NMF")
(synopsis "Algorithms and framework for nonnegative matrix factorization")
(description
"This package provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published
algorithms and seeding methods, and provides a framework to test, develop and
plug new or custom algorithms. Most of the built-in algorithms have been
optimized in C++, and the main interface function provides an easy way of
performing parallel computations on multicore machines.")
(license license:gpl2+)))
(define-public r-r-methodss3
(package
(name "r-r-methodss3")