guix/guix
3
5
Fork 0
mirror of git://git.savannah.gnu.org/guix.git synced 2023-12-14 03:33:07 +01:00
Code Issues Releases Wiki Activity

gnu: vcflib: Fix generated pkg-config file.

Browse source 
* gnu/packages/bioinformatics.scm (vcflib)[arguments]: In custom
generated pkg-config file, link with all needed libraries and
fix linker library.
* gnu/packages/patches/freebayes-devendor-deps.patch: Adjust accordingly.
This commit is contained in:
Efraim Flashner 2021-02-01 18:18:42 +02:00
parent 15078567c1
commit 877ab0266c
Signed by untrusted user: efraim
GPG key ID: 41AAE7DCCA3D8351
2 changed files with 5 additions and 5 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

8
gnu/packages/bioinformatics.scm
View file

@ -15209,18 +15209,18 @@ library automatically handles index file generation and use.")
(let* ((out (assoc-ref outputs "out"))
(pkgconfig (string-append out "/lib/pkgconfig")))
(mkdir-p pkgconfig)
(with-output-to-file (string-append pkgconfig "/libvcflib.pc")
(with-output-to-file (string-append pkgconfig "/vcflib.pc")
(lambda _
(format #t "prefix=~a~@
exec_prefix=${prefix}~@
libdir=${exec_prefix}/lib~@
includedir=${prefix}/include~@
~@
Name: libvcflib~@
Name: vcflib~@
Version: ~a~@
Requires: smithwaterman, fastahack~@
Requires: smithwaterman, fastahack, tabixpp~@
Description: C++ library for parsing and manipulating VCF files~@
Libs: -L${libdir} -llibvcflib~@
Libs: -L${libdir} -lvcflib~@
Cflags: -I${includedir}~%"
out ,version)))
#t))))))

2
gnu/packages/patches/freebayes-devendor-deps.patch
View file

@ -23,7 +23,7 @@ index f6bf242..bded4af 100644
+tabixpp_dep = dependency('tabixpp', required : false)
+fastahack_dep = dependency('fastahack', required : false)
+smithwaterman_dep = dependency('smithwaterman', required : false)
+vcflib_dep = dependency('libvcflib', required: false)
+vcflib_dep = dependency('vcflib', required: false)
thread_dep = dependency('threads')
if htslib_dep.found()