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gnu: Add r-millefy.

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* gnu/packages/bioinformatics.scm (r-millefy): New variable.
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Mădălin Ionel Patrașcu 2022-07-27 10:17:42 +02:00 committed by Ricardo Wurmus
parent b8df15b748
commit 8d7a721400
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gnu/packages/bioinformatics.scm
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@ -11,7 +11,7 @@
;;; Copyright © 2017, 2021, 2022 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2018, 2019, 2020, 2021, 2022 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com>
;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
@ -7525,6 +7525,41 @@ of transcriptional heterogeneity among single cells.")
;; See https://github.com/hms-dbmi/scde/issues/38
(license license:gpl2)))
(define-public r-millefy
(package
(name "r-millefy")
(version "0.1.9-beta")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/yuifu/millefy")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0z2y0x99f761pxvg6n37cmnyrnj699jhjk43pvk05sa86iykgizl"))))
(properties `((upstream-name . "millefy")))
(build-system r-build-system)
(propagated-inputs
(list r-data-table
r-destiny
r-dplyr
r-genomicranges
r-iranges
r-magrittr
r-rsamtools
r-rtracklayer
r-tidyr))
(home-page "https://github.com/yuifu/millefy")
(synopsis "Make millefy plot with single-cell RNA-seq data")
(description "@code{Millefy} is a tool for visualizing read coverage of
@dfn{scRNA-seq}(single-cell RNA sequencing) datasets in genomic contexts. By
dynamically and automatically reorder single cells based on locus-specific
pseudo time, @code{Millefy} highlights cell-to-cell heterogeneity in read coverage
of scRNA-seq data.")
(license license:expat)))
(define-public r-misha
(package
(name "r-misha")