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gnu: Add r-sctransform.

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* gnu/packages/cran.scm (r-sctransform): New variable.
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Ricardo Wurmus 2019-04-19 15:38:25 +02:00
parent 7015ae6881
commit 9b86fea05f
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1 changed files with 32 additions and 0 deletions
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32
gnu/packages/cran.scm
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@ -13888,3 +13888,35 @@ regular expressions. Regular expressions are a very powerful feature, however
they are often difficult to interpret. Rex allows you to build complex
regular expressions from human readable expressions")
(license license:expat)))
(define-public r-sctransform
(package
(name "r-sctransform")
(version "0.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "sctransform" version))
(sha256
(base32
"1r5kiqqs318q59h2i8m7c6nhghp9w6q26ss2y5a390lkhsawgx6p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-future" ,r-future)
("r-future-apply" ,r-future-apply)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)
("r-reshape2" ,r-reshape2)))
(home-page "https://github.com/ChristophH/sctransform")
(synopsis "Variance stabilizing transformations for Single Cell UMI Data")
(description
"This package provides a normalization method for single-cell UMI count
data using a variance stabilizing transformation. The transformation is based
on a negative binomial regression model with regularized parameters. As part
of the same regression framework, this package also provides functions for
batch correction, and data correction.")
(license license:gpl3)))