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gnu: r-samr: Move to (gnu packages bioconductor).

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* gnu/packages/cran.scm (r-samr): Move from here...
* gnu/packages/bioconductor.scm (r-samr): ...to here.
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zimoun 2021-05-21 22:25:40 +02:00 committed by Ricardo Wurmus
parent 4f030cc0db
commit a2a1d86a77
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2 changed files with 31 additions and 30 deletions
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31
gnu/packages/bioconductor.scm
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@ -10,6 +10,7 @@
;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;; Copyright © 2021 Hong Li <hli@mdc-berlin.de>
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -2809,6 +2810,36 @@ built-in). The user may export/import tracks to/from the supported browsers,
as well as query and modify the browser state, such as the current viewport.")
(license license:artistic2.0)))
;; This is a CRAN package, but it depends on a Bioconductor package.
(define-public r-samr
(package
(name "r-samr")
(version "3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "samr" version))
(sha256
(base32
"01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
(properties `((upstream-name . "samr")))
(build-system r-build-system)
(propagated-inputs
`(("r-gsa" ,r-gsa)
("r-impute" ,r-impute)
("r-matrixstats" ,r-matrixstats)
("r-openxlsx" ,r-openxlsx)
("r-shiny" ,r-shiny)
("r-shinyfiles" ,r-shinyfiles)))
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://statweb.stanford.edu/~tibs/SAM/")
(synopsis "Significance analysis of Microarrays")
(description
"This is a package for significance analysis of Microarrays for
differential expression analysis, RNAseq data and related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-shortread
(package
(name "r-shortread")

30
gnu/packages/cran.scm
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@ -33,7 +33,6 @@
;;; Copyright © 2020 Magali Lemes <magalilemes00@gmail.com>
;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2020 Aniket Patil <aniket112.patil@gmail.com>
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -29153,35 +29152,6 @@ indicator, a quantitative variable or a survival time.")
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-samr
(package
(name "r-samr")
(version "3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "samr" version))
(sha256
(base32
"01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"))))
(properties `((upstream-name . "samr")))
(build-system r-build-system)
(propagated-inputs
`(("r-gsa" ,r-gsa)
("r-impute" ,r-impute)
("r-matrixstats" ,r-matrixstats)
("r-openxlsx" ,r-openxlsx)
("r-shiny" ,r-shiny)
("r-shinyfiles" ,r-shinyfiles)))
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://statweb.stanford.edu/~tibs/SAM/")
(synopsis "Significance analysis of Microarrays")
(description
"This is a package for significance analysis of Microarrays for
differential expression analysis, RNAseq data and related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-randomforestsrc
(package
(name "r-randomforestsrc")