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gnu: Add r-interactionset.

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* gnu/packages/bioconductor.scm (r-interactionset): New variable.
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Ricardo Wurmus 2018-06-15 08:21:01 +02:00
parent 056402220e
commit a32279ffb6
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gnu/packages/bioconductor.scm
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@ -603,3 +603,35 @@ assessment, principal component analysis on codon coverage.")
"This package provides plotting functions, frameshift detection and
parsing of genetic sequencing data from ribosome profiling experiments.")
(license license:gpl3)))
(define-public r-interactionset
(package
(name "r-interactionset")
(version "1.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "InteractionSet" version))
(sha256
(base32
"0xngraq7ic80jr98i1wqp8bxdgidq6py60m2wfk82n1ixpcdck8n"))))
(properties
`((upstream-name . "InteractionSet")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(home-page "https://bioconductor.org/packages/InteractionSet")
(synopsis "Base classes for storing genomic interaction data")
(description
"This packages provides the @code{GInteractions},
@code{InteractionSet} and @code{ContactMatrix} objects and associated methods
for storing and manipulating genomic interaction data from Hi-C and ChIA-PET
experiments.")
(license license:gpl3)))