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gnu: Add r-metaneighbor.

* gnu/packages/bioconductor.scm (r-metaneighbor): New variable.
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Mădălin Ionel Patrașcu 2022-11-29 09:00:56 +01:00 committed by Ricardo Wurmus
parent 9a1ad4a2a0
commit a712c07d6a
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@ -6010,6 +6010,42 @@ reduction (between group analysis) and joint dimension reduction of two
datasets (coinertia analysis).")
(license license:artistic2.0)))
(define-public r-metaneighbor
(package
(name "r-metaneighbor")
(version "1.18.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "MetaNeighbor" version))
(sha256
(base32
"1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"))))
(properties `((upstream-name . "MetaNeighbor")))
(build-system r-build-system)
(propagated-inputs
(list r-beanplot
r-dplyr
r-ggplot2
r-gplots
r-igraph
r-matrix
r-matrixstats
r-rcolorbrewer
r-singlecellexperiment
r-summarizedexperiment
r-tibble
r-tidyr))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/MetaNeighbor")
(synopsis "Single cell replicability analysis")
(description
"This package implements a method to rapidly assess cell type identity using
both functional and random gene sets and it allows users to quantify cell type
replicability across datasets using neighbor voting. @code{MetaNeighbor} works
on the basis that cells of the same type should have more similar gene expression
profiles than cells of different types.")
(license license:expat)))
(define-public r-methylkit
(package
(name "r-methylkit")