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gnu: r-pcamethods: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-pcamethods): Move from here...
* gnu/packages/bioconductor.scm (r-pcamethods): ...to here.
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zimoun 2021-05-21 22:25:46 +02:00 committed by Ricardo Wurmus
parent d7fa9c1ffd
commit ad46c8aa7f
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2 changed files with 30 additions and 30 deletions
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30
gnu/packages/bioconductor.scm
View file

@ -2731,6 +2731,36 @@ contains a number of utilities to explore the MS/MS results and assess missed
and irregular enzymatic cleavages, mass measurement accuracy, etc.")
(license license:artistic2.0)))
(define-public r-pcamethods
(package
(name "r-pcamethods")
(version "1.82.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "pcaMethods" version))
(sha256
(base32
"04xb4vjky6hq58l30i1iq9rv5gzjdxnidjxpnzg7pvg67vz8pgf0"))))
(properties `((upstream-name . "pcaMethods")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-mass" ,r-mass)
("r-rcpp" ,r-rcpp)))
(home-page "https://github.com/hredestig/pcamethods")
(synopsis "Collection of PCA methods")
(description
"This package provides Bayesian PCA, Probabilistic PCA, Nipals PCA,
Inverse Non-Linear PCA and the conventional SVD PCA. A cluster based method
for missing value estimation is included for comparison. BPCA, PPCA and
NipalsPCA may be used to perform PCA on incomplete data as well as for
accurate missing value estimation. A set of methods for printing and plotting
the results is also provided. All PCA methods make use of the same data
structure (pcaRes) to provide a common interface to the PCA results.")
(license license:gpl3+)))
(define-public r-rbgl
(package
(name "r-rbgl")

30
gnu/packages/bioinformatics.scm
View file

@ -9227,36 +9227,6 @@ mzIdentML files with the drawback of having less pretty output than a vendor
specific parser.")
(license license:gpl2+)))
(define-public r-pcamethods
(package
(name "r-pcamethods")
(version "1.82.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "pcaMethods" version))
(sha256
(base32
"04xb4vjky6hq58l30i1iq9rv5gzjdxnidjxpnzg7pvg67vz8pgf0"))))
(properties `((upstream-name . "pcaMethods")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-mass" ,r-mass)
("r-rcpp" ,r-rcpp)))
(home-page "https://github.com/hredestig/pcamethods")
(synopsis "Collection of PCA methods")
(description
"This package provides Bayesian PCA, Probabilistic PCA, Nipals PCA,
Inverse Non-Linear PCA and the conventional SVD PCA. A cluster based method
for missing value estimation is included for comparison. BPCA, PPCA and
NipalsPCA may be used to perform PCA on incomplete data as well as for
accurate missing value estimation. A set of methods for printing and plotting
the results is also provided. All PCA methods make use of the same data
structure (pcaRes) to provide a common interface to the PCA results.")
(license license:gpl3+)))
(define-public r-aroma-light
(package
(name "r-aroma-light")