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gnu: Add bio-blastxmlparser.
* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
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@ -2733,6 +2733,30 @@ chr+pos+alt information in a database.")
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(home-page "https://github.com/pjotrp/bio-locus")
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(license license:expat)))
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(define-public bio-blastxmlparser
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(package
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(name "bio-blastxmlparser")
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(version "2.0.4")
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(source (origin
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(method url-fetch)
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(uri (rubygems-uri "bio-blastxmlparser" version))
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(sha256
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(base32
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"1wf4qygcmdjgcqm6flmvsagfr1gs9lf63mj32qv3z1f481zc5692"))))
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(build-system ruby-build-system)
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(propagated-inputs
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`(("ruby-bio-logger" ,ruby-bio-logger)
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("ruby-nokogiri" ,ruby-nokogiri)))
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(inputs
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`(("ruby-rspec" ,ruby-rspec)))
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(synopsis "Fast big data BLAST XML parser and library")
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(description
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"Very fast parallel big-data BLAST XML file parser which can be used as
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command line utility. Use blastxmlparser to: Parse BLAST XML; filter output;
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generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.")
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(home-page "http://github.com/pjotrp/blastxmlparser")
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(license license:expat)))
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(define-public bioruby
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(package
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(name "bioruby")
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