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gnu: r-tximport: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-tximport): Move from here...
* gnu/packages/bioconductor.scm (r-tximport): ...to here.
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zimoun 2021-05-21 22:26:15 +02:00 committed by Ricardo Wurmus
parent bf8f502956
commit b6e84d30eb
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2 changed files with 24 additions and 24 deletions
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24
gnu/packages/bioconductor.scm
View file

@ -4114,6 +4114,30 @@ dependencies between GO terms can be implemented and applied.")
;; Any version of the LGPL applies.
(license license:lgpl2.1+)))
(define-public r-tximport
(package
(name "r-tximport")
(version "1.18.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "tximport" version))
(sha256
(base32
"1nxnlvl4iv2392xa72j0lzy2xnb3vrvyhfrdj9l54znwkrryyq34"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/tximport")
(synopsis "Import and summarize transcript-level estimates for gene-level analysis")
(description
"This package provides tools to import transcript-level abundance,
estimated counts and transcript lengths, and to summarize them into matrices
for use with downstream gene-level analysis packages. Average transcript
length, weighted by sample-specific transcript abundance estimates, is
provided as a matrix which can be used as an offset for different expression
of gene-level counts.")
(license license:gpl2+)))
(define-public r-variantannotation
(package
(name "r-variantannotation")

24
gnu/packages/bioinformatics.scm
View file

@ -8164,30 +8164,6 @@ bound and non bound genomic regions to accurately identify transcription
factors bound at the specific regions.")
(license license:gpl2+)))
(define-public r-tximport
(package
(name "r-tximport")
(version "1.18.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "tximport" version))
(sha256
(base32
"1nxnlvl4iv2392xa72j0lzy2xnb3vrvyhfrdj9l54znwkrryyq34"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/tximport")
(synopsis "Import and summarize transcript-level estimates for gene-level analysis")
(description
"This package provides tools to import transcript-level abundance,
estimated counts and transcript lengths, and to summarize them into matrices
for use with downstream gene-level analysis packages. Average transcript
length, weighted by sample-specific transcript abundance estimates, is
provided as a matrix which can be used as an offset for different expression
of gene-level counts.")
(license license:gpl2+)))
(define-public r-rhdf5filters
(package
(name "r-rhdf5filters")