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gnu: r-variantannotation: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here...
* gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
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zimoun 2021-03-15 14:01:58 +01:00 committed by Ricardo Wurmus
parent 082f3c5433
commit bf612ead76
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2 changed files with 38 additions and 38 deletions
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38
gnu/packages/bioconductor.scm
View file

@ -2051,6 +2051,44 @@ experimental designs is facilitated by a consistently implemented sample
annotation infrastructure.")
(license license:artistic2.0)))
(define-public r-variantannotation
(package
(name "r-variantannotation")
(version "1.36.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "VariantAnnotation" version))
(sha256
(base32
"1sl0l6v05lfglj281nszma0h5k234md7rn2pdah8vs2d4iq3kimw"))))
(properties
`((upstream-name . "VariantAnnotation")))
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-dbi" ,r-dbi)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrixgenerics" ,r-matrixgenerics)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-rhtslib" ,r-rhtslib)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)
("r-zlibbioc" ,r-zlibbioc)))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/VariantAnnotation")
(synopsis "Package for annotation of genetic variants")
(description "This R package can annotate variants, compute amino acid
coding changes and predict coding outcomes.")
(license license:artistic2.0)))
(define-public r-geneplotter
(package
(name "r-geneplotter")

38
gnu/packages/bioinformatics.scm
View file

@ -7691,44 +7691,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-variantannotation
(package
(name "r-variantannotation")
(version "1.36.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "VariantAnnotation" version))
(sha256
(base32
"1sl0l6v05lfglj281nszma0h5k234md7rn2pdah8vs2d4iq3kimw"))))
(properties
`((upstream-name . "VariantAnnotation")))
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-dbi" ,r-dbi)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrixgenerics" ,r-matrixgenerics)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-rhtslib" ,r-rhtslib)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)
("r-zlibbioc" ,r-zlibbioc)))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/VariantAnnotation")
(synopsis "Package for annotation of genetic variants")
(description "This R package can annotate variants, compute amino acid
coding changes and predict coding outcomes.")
(license license:artistic2.0)))
(define-public r-limma
(package
(name "r-limma")