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gnu: r-biomart: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-biomart): Move from here... * gnu/packages/bioconductor.scm (r-biomart): ...to here.
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2 changed files with 38 additions and 38 deletions
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@ -1621,6 +1621,44 @@ databases. Packages produced are intended to be used with AnnotationDbi.")
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on Bioconductor or which replace R functions.")
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on Bioconductor or which replace R functions.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-biomart
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(package
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(name "r-biomart")
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(version "2.46.3")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "biomaRt" version))
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(sha256
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(base32
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"0gwmd0ykpv0gyh34c56g5m12lil20fvig49f3ih1jxrxf3q4wmq7"))))
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(properties
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`((upstream-name . "biomaRt")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biocfilecache" ,r-biocfilecache)
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("r-httr" ,r-httr)
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("r-openssl" ,r-openssl)
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("r-progress" ,r-progress)
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("r-rappdirs" ,r-rappdirs)
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("r-stringr" ,r-stringr)
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("r-xml" ,r-xml)
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("r-xml2" ,r-xml2)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/biomaRt")
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(synopsis "Interface to BioMart databases")
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(description
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"biomaRt provides an interface to a growing collection of databases
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implementing the @url{BioMart software suite, http://www.biomart.org}. The
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package enables retrieval of large amounts of data in a uniform way without
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the need to know the underlying database schemas or write complex SQL queries.
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Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene,
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Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt
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users direct access to a diverse set of data and enable a wide range of
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powerful online queries from gene annotation to database mining.")
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(license license:artistic2.0)))
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(define-public r-category
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(define-public r-category
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(package
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(package
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(name "r-category")
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(name "r-category")
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@ -7691,44 +7691,6 @@ including VCF header and contents in RDF and JSON.")
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(home-page "https://github.com/vcflib/bio-vcf")
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(home-page "https://github.com/vcflib/bio-vcf")
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(license license:expat)))
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(license license:expat)))
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(define-public r-biomart
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(package
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(name "r-biomart")
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(version "2.46.3")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "biomaRt" version))
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(sha256
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(base32
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"0gwmd0ykpv0gyh34c56g5m12lil20fvig49f3ih1jxrxf3q4wmq7"))))
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(properties
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`((upstream-name . "biomaRt")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-biocfilecache" ,r-biocfilecache)
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("r-httr" ,r-httr)
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("r-openssl" ,r-openssl)
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("r-progress" ,r-progress)
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("r-rappdirs" ,r-rappdirs)
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("r-stringr" ,r-stringr)
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("r-xml" ,r-xml)
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("r-xml2" ,r-xml2)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://bioconductor.org/packages/biomaRt")
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(synopsis "Interface to BioMart databases")
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(description
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"biomaRt provides an interface to a growing collection of databases
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implementing the @url{BioMart software suite, http://www.biomart.org}. The
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package enables retrieval of large amounts of data in a uniform way without
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the need to know the underlying database schemas or write complex SQL queries.
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Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene,
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Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt
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users direct access to a diverse set of data and enable a wide range of
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powerful online queries from gene annotation to database mining.")
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(license license:artistic2.0)))
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(define-public r-biocparallel
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(define-public r-biocparallel
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(package
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(package
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(name "r-biocparallel")
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(name "r-biocparallel")
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