3
4
Fork 0
mirror of git://git.savannah.gnu.org/guix.git synced 2023-12-14 03:33:07 +01:00

gnu: Add r-scdblfinder.

* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
This commit is contained in:
Ricardo Wurmus 2021-12-02 10:02:54 +01:00
parent bef86fed3e
commit c2c63a00de
No known key found for this signature in database
GPG key ID: 197A5888235FACAC

View file

@ -4193,6 +4193,46 @@ differential expression analysis, RNAseq data and related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-scdblfinder
(package
(name "r-scdblfinder")
(version "1.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scDblFinder" version))
(sha256
(base32 "0wzmmcsnjybgzbc5rn4i72n26j9n59dfy1zg8ij0q8p4276jplsd"))))
(properties `((upstream-name . "scDblFinder")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biocneighbors" ,r-biocneighbors)
("r-biocparallel" ,r-biocparallel)
("r-biocsingular" ,r-biocsingular)
("r-bluster" ,r-bluster)
("r-delayedarray" ,r-delayedarray)
("r-igraph" ,r-igraph)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
("r-s4vectors" ,r-s4vectors)
("r-scater" ,r-scater)
("r-scran" ,r-scran)
("r-scuttle" ,r-scuttle)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-xgboost" ,r-xgboost)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/plger/scDblFinder")
(synopsis "Detect multiplets in single-cell RNA sequencing data")
(description
"The scDblFinder package gathers various methods for the detection and
handling of doublets/multiplets in single-cell RNA sequencing data (i.e.
multiple cells captured within the same droplet or reaction volume). It
includes methods formerly found in the scran package, and the new fast and
comprehensive scDblFinder method.")
(license license:gpl3)))
(define-public r-seqlogo
(package
(name "r-seqlogo")