From e5610fd9f4f396a5b314d4ffa338a507eba677be Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 17 Dec 2020 11:38:24 +0100 Subject: [PATCH] gnu: r-genelendatabase: Move from "annotation" to "experiment" section. * gnu/packages/bioconductor.scm (r-genelendatabase): Move variable. --- gnu/packages/bioconductor.scm | 48 +++++++++++++++++------------------ 1 file changed, 24 insertions(+), 24 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 58f7e284e3..60b09cdb65 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -569,30 +569,6 @@ as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.") "This package exposes an annotation database generated from Ensembl.") (license license:artistic2.0))) -(define-public r-genelendatabase - (package - (name "r-genelendatabase") - (version "1.18.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "geneLenDataBase" version 'experiment)) - (sha256 - (base32 - "03gm4pvsfascx7kjg0jycpf4f572mja68wwmwigs390vbmawyb4a")))) - (properties - `((upstream-name . "geneLenDataBase"))) - (build-system r-build-system) - (propagated-inputs - `(("r-rtracklayer" ,r-rtracklayer) - ("r-genomicfeatures" ,r-genomicfeatures))) - (home-page "https://bioconductor.org/packages/geneLenDataBase/") - (synopsis "Lengths of mRNA transcripts for a number of genomes") - (description - "This package provides the lengths of mRNA transcripts for a number of -genomes and gene ID formats, largely based on the UCSC table browser.") - (license license:lgpl2.0+))) - (define-public r-txdb-hsapiens-ucsc-hg19-knowngene (package (name "r-txdb-hsapiens-ucsc-hg19-knowngene") @@ -1025,6 +1001,30 @@ All datasets are restricted to protein coding genes.") from Illumina 450k methylation arrays.") (license license:artistic2.0))) +(define-public r-genelendatabase + (package + (name "r-genelendatabase") + (version "1.18.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "geneLenDataBase" version 'experiment)) + (sha256 + (base32 + "03gm4pvsfascx7kjg0jycpf4f572mja68wwmwigs390vbmawyb4a")))) + (properties + `((upstream-name . "geneLenDataBase"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rtracklayer" ,r-rtracklayer) + ("r-genomicfeatures" ,r-genomicfeatures))) + (home-page "https://bioconductor.org/packages/geneLenDataBase/") + (synopsis "Lengths of mRNA transcripts for a number of genomes") + (description + "This package provides the lengths of mRNA transcripts for a number of +genomes and gene ID formats, largely based on the UCSC table browser.") + (license license:lgpl2.0+))) + (define-public r-hsmmsinglecell (package (name "r-hsmmsinglecell")