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gnu: Add r-pcaexplorer.

* gnu/packages/bioconductor.scm (r-pcaexplorer): New variable.
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Mădălin Ionel Patrașcu 2022-08-22 12:59:41 +02:00 committed by Ricardo Wurmus
parent 6c21c9fab1
commit f6bcde85a6
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@ -5073,6 +5073,61 @@ annotation packages each of which has its own schema by taking advantage of
the fact that each of these packages implements a select methods.")
(license license:artistic2.0)))
(define-public r-pcaexplorer
(package
(name "r-pcaexplorer")
(version "2.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "pcaExplorer" version))
(sha256
(base32
"0xkafpi6y5n8hljdaj183hd5z4ik7lpbklg2cbx1hwfz4n4hh1bl"))))
(properties `((upstream-name . "pcaExplorer")))
(build-system r-build-system)
(propagated-inputs
(list r-annotationdbi
r-base64enc
r-biomart
r-deseq2
r-dt
r-genefilter
r-genomicranges
r-ggplot2
r-ggrepel
r-go-db
r-gostats
r-heatmaply
r-iranges
r-knitr
r-limma
r-nmf
r-pheatmap
r-plotly
r-plyr
r-rmarkdown
r-s4vectors
r-scales
r-shiny
r-shinyace
r-shinybs
r-shinydashboard
r-summarizedexperiment
r-threejs
r-tidyr
r-topgo))
(native-inputs (list r-knitr))
(home-page "https://github.com/federicomarini/pcaExplorer")
(synopsis
"Interactive Visualization of RNA-seq Data Using a Principal Components Approach")
(description
"This package provides functionality for interactive visualization of RNA-seq
datasets based on Principal Components Analysis. The methods provided allow for
quick information extraction and effective data exploration. A Shiny
application encapsulates the whole analysis.")
(license license:expat)))
(define-public r-pcamethods
(package
(name "r-pcamethods")