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Author SHA1 Message Date
Ludovic Courtès
0dcca97c9f
gnu: opam: Depend on 'git-minimal/fixed'. 
* gnu/packages/ocaml.scm (opam)[native-inputs]: Replace 'git-minimal'
with 'git-minimal/fixed'.
 2022-12-24 00:39:10 +01:00
Ludovic Courtès
9203de5250
gnu: ocamlformat: Depend on 'git-minimal/fixed'. 
* gnu/packages/ocaml.scm (ocamlformat): Replace 'git-minimal' with
'git-minimal/fixed'.
 2022-12-24 00:39:10 +01:00
Ludovic Courtès
83b1a2f682
gnu: julia-documenter: Depend on 'git-minimal/fixed'. 
That way the main 'git-minimal' package can be updated without causing a
rebuild of all the dependents of 'julia-documenter'.

* gnu/packages/julia-xyz.scm (julia-documenter)[native-inputs]: Replace
'git-minimal' by 'git-minimal/fixed'.
 2022-12-24 00:39:10 +01:00
Ricardo Wurmus
ddd6b70591
gnu: Add emacs-loccur. 
* gnu/packages/emacs-xyz.scm (emacs-loccur): New variable.
 2022-12-24 00:32:07 +01:00
Ricardo Wurmus
b6d9e266a7
gnu: ceph: Update to 17.2.5. 
* gnu/packages/storage.scm (ceph): Update to 17.2.5.
[source]: Remove obsolete patches; remove bundled sources for arrow.
[arguments]: Disable parallel build; use system arrow.
[inputs]: Drop input labels; add apache-thrift, apache-arrow-for-ceph, and
utf8proc.
* gnu/packages/patches/ceph-boost-compat.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2022-12-23 20:20:06 +01:00
Ricardo Wurmus
ad141242f8
gnu: Add apache-arrow-for-ceph. 
* gnu/packages/databases.scm (apache-arrow-for-ceph): New variable.
 2022-12-23 20:20:06 +01:00
Nicolas Goaziou
ef060487a2
gnu: naev: Update to 0.10.0. 
* gnu/packages/games.scm (naev): Update to 0.10.0.
[inputs]: Add ENET, PCRE2.
 2022-12-23 19:06:47 +01:00
Nicolas Goaziou
a3c2668788
gnu: fet: Update to 6.7.7. 
* gnu/packages/education.scm (fet): Update to 6.7.7.
 2022-12-23 18:29:36 +01:00
Guillaume Le Vaillant
11aa1e6ad1
gnu: sdrangel: Update to 7.8.5. 
* gnu/packages/radio.scm (sdrangel): Update to 7.8.5.
  [arguments]: Remove 'fix-boost-compatibility' phase.
 2022-12-23 16:38:32 +01:00
Guillaume Le Vaillant
558494674d
gnu: aptdec: Update to 1.7-3.4d4a0c9. 
* gnu/packages/radio.scm (aptdec): Update to 1.7-3.4d4a0c9.
 2022-12-23 16:33:16 +01:00
Nicolas Goaziou
dd8a20355e
gnu: emacs-cider: Update to 1.6.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.6.0.
 2022-12-23 15:16:31 +01:00
Nicolas Goaziou
3a77238721
gnu: emacs-vertico: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 1.0.
 2022-12-23 15:16:31 +01:00
Nicolas Goaziou
e26d6a6de0
gnu: emacs-subed: Update to 1.0.28. 
* gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.0.28.
 2022-12-23 15:16:31 +01:00
Efraim Flashner
9923100a42
gnu: sgabios: Fix build on cross-build architectures. 
* gnu/packages/firmware.scm (sgabios)[arguments]: When cross-building
add a make-flag to use the correct objcopy.
 2022-12-23 13:56:11 +02:00
Roman Scherer
66188398c4
gnu: netcdf: Update to 4.9.0. 
* gnu/packages/maths.scm (netcdf): Update to 4.9.0.
  [source]: Use new URI.
  [inputs]: Add libxml2 and unzip.
  [arguments]: Update 'configure-flags'. Add 'fix-test-rcmerge' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-12-23 11:56:27 +01:00
Nicolas Goaziou
1b29fccff2
gnu: emacs-mood-line: Update to 2.0.0. 
* gnu/packages/emacs-xyz.scm (emacs-mood-line): Update to 2.0.0.
 2022-12-22 23:39:30 +01:00
Nicolas Goaziou
c8495bfc79
gnu: emacs-marginalia: Update to 1.0. 
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 1.0.
 2022-12-22 23:38:13 +01:00
Morgan Willcock
75b0388a90
gnu: emacs-org-msg: Update to 4.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-msg): Update to 4.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-22 23:31:04 +01:00
Nicolas Goaziou
f4672d9795
gnu: emacs-god-mode: Run tests. 
* gnu/packages/emacs-xyz.scm (emacs-god-mode)[arguments]: Run tests.
[native-inputs]: Add EMACS-ECUKES.
 2022-12-22 23:31:04 +01:00
Hilton Chain
29e2d45b11
gnu: emacs-god-mode: Update to 2.18.0. 
* gnu/packages/emacs-xyz.scm (emacs-god-mode): Update to 2.18.0.
[source,home-page]: Changed URL.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-22 23:31:03 +01:00
Nicolas Goaziou
82ab75b6a2
gnu: emacs-dashboard: Improve package style. 
* gnu/packages/emacs-xyz.scm (emacs-dashboard)[arguments]: Use G-expressions.
<#:include>: Use %default-include.
<#:phases>: Remove trailing #T, and unnecessary call to CHMOD.
[description]: Properly capitalize it.
 2022-12-22 23:31:03 +01:00
florhizome
fc29138074
gnu: emacs-dashboard: Update to 1.7.0-0.a69cc10. 
* gnu/packages/emacs-xyz.scm (emacs-dashboard): Update to 1.7.0-0.a69cc10.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-12-22 23:30:31 +01:00
Efraim Flashner
6ce7904a85
gnu: ipxe-qemu: Fix building on 32-bit systems. 
* gnu/packages/bootloaders.scm (ipxe-qemu)[native-inputs]: When building
from a 32-bit system add a binutils variant capable of assembling 64-bit
instructions and an ld-wrapper using it.
 2022-12-22 22:09:58 +02:00
Leo Famulari
1be1961a1c
gnu: linux-libre 5.10: Update to 5.10.161. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.161.
(linux-libre-5.10-pristine-source): Update hash.
 2022-12-22 11:36:25 -05:00
Leo Famulari
dd575627b3
gnu: linux-libre 5.15: Update to 5.15.85. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.85.
(linux-libre-5.15-pristine-source): Update hash.
 2022-12-22 11:36:25 -05:00
Leo Famulari
9922da2829
gnu: linux-libre: Update to 6.0.15. 
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.15.
(linux-libre-6.0-pristine-source): Update hash.
 2022-12-22 11:36:25 -05:00
Michael Rohleder
d2cd3290ea
gnu: stockfish: Update to 15.1. 
* gnu/packages/games.scm (stockfish): Update to 15.1.
  [arguments]: Renamed phase remove-m-flag to remove-m-flag-and-net-target.
  Add removing of the net target in the Makefile, because it wants networking.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-12-22 17:15:48 +01:00
Guillaume Le Vaillant
dade92613b
gnu: Add dsd. 
* gnu/packages/radio.scm (dsd): New variable.
 2022-12-22 17:15:48 +01:00
Marius Bakke
c9392e6fc6
gnu: QEMU: Unbundle SGABIOS. 
* gnu/packages/virtualization.scm (qemu)[source]: Purge sgabios.
[arguments]: Replace bundled variant with the one from INPUTS.
[inputs]: Add SGABIOS.
 2022-12-22 16:50:47 +01:00
Marius Bakke
368e00cce0
gnu: Add sgabios. 
* gnu/packages/firmware.scm (sgabios): New variable.
 2022-12-22 16:50:47 +01:00
Marius Bakke
9279775d69
gnu: iPXE: Embed the actual package version. 
* gnu/packages/bootloaders.scm (ipxe)[arguments]: Add phase to set the proper
version.
 2022-12-22 16:50:47 +01:00
Marius Bakke
209aed9511
gnu: Install QEMU firmare files to 'share/qemu'. 
This paves the way for using a native search path in the future.

* gnu/packages/bootloaders.scm (ipxe-qemu)[arguments]: Install firmware files
to 'share/qemu' instead of 'share/firmware'.
* gnu/packages/firmware.scm (seabios-qemu)[arguments]: Likewise.
* gnu/packages/virtualization.scm (qemu)[arguments]: Adjust accordingly.
 2022-12-22 16:50:47 +01:00
Marius Bakke
ba7f6f0bf3
gnu: QEMU: Unbundle iPXE. 
* gnu/packages/virtualization.scm (qemu)[source](snippet): Purge iPXE.
[arguments]: Re-add firmware files from IPXE-QEMU.
[inputs]: Add IPXE-QEMU.
 2022-12-22 16:50:47 +01:00
Marius Bakke
a5dbe84a61
gnu: ipxe-qemu: Cross-compile on non x86_64. 
* gnu/packages/bootloaders.scm (ipxe-qemu)[native-inputs]: When not targeting
x86_64, add CROSS-GCC and CROSS-BINUTILS.
[arguments]: Set CROSS_COMPILE in that case.
 2022-12-22 16:50:47 +01:00
Marius Bakke
ffc0037458
gnu: SeaBIOS: Split QEMU variants out to separate package. 
* gnu/packages/firmware.scm (seabios)[arguments]: Move custom build and
install phases out to ...
(seabios-qemu): ... this new variable.
* gnu/packages/virtualization.scm (qemu)[inputs]: Change from SEABIOS to
SEABIOS-QEMU.
 2022-12-22 16:50:47 +01:00
Marius Bakke
aeabddcfc5
gnu: QEMU: Don't provide --firmwarepath for user-mode binaries. 
* gnu/packages/virtualization.scm (qemu)[arguments]: Remove --firmwarepath
from the user-mode emulation configure invocation.
 2022-12-22 16:50:47 +01:00
Efraim Flashner
c1d543203e
gnu: openvpn: Update to 2.5.8. 
* gnu/packages/vpn.scm (openvpn): Update to 2.5.8.
 2022-12-22 14:28:21 +02:00
Ricardo Wurmus
d8a9d55b57
gnu: Add r-bedtorch. 
* gnu/packages/bioinformatics.scm (r-bedtorch): New variable.
 2022-12-22 11:18:02 +01:00
Ricardo Wurmus
6d2f312b23
gnu: Add r-rhtslib12. 
* gnu/packages/bioinformatics.scm (r-rhtslib12): New variable.
 2022-12-22 11:17:52 +01:00
Ricardo Wurmus
2a4930a1e6
gnu: Add wiggletools. 
* gnu/packages/bioinformatics.scm (wiggletools): New variable.
 2022-12-22 10:29:20 +01:00
Efraim Flashner
7c2dab7dd4
gnu: xterm: Update to 377. 
* gnu/packages/xorg.scm (xterm): Update to 377.
 2022-12-22 11:00:56 +02:00
Vagrant Cascadian
0744540d09
gnu: guile-ssh: Update to 0.16.0. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.16.0.
 2022-12-21 22:15:15 -08:00
Andrew Tropin
30143cdad2
gnu: fheroes2: Update to 1.0.0. 
* gnu/packages/games.scm (fheroes2): Update to 1.0.0.
 2022-12-22 09:59:39 +04:00
Navid Afkhami
87c3fab854
gnu: Add python-episcanpy. 
* gnu/packages/bioinformatics.scm (python-episcanpy): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-12-22 00:17:43 +01:00
Navid Afkhami
d07543b886
gnu: Add python-bamnostic. 
* gnu/packages/bioinformatics.scm (python-bamnostic): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-12-22 00:14:05 +01:00
Ricardo Wurmus
9e495087d2
gnu: Add vembrane. 
* gnu/packages/bioinformatics.scm (vembrane): New variable.
 2022-12-21 23:12:41 +01:00
Ricardo Wurmus
1194cb1c40
gnu: python-plastid: Update to 0.6.0. 
* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.6.0.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; add build phases 'unpack-test-data and
'build-extensions.
[inputs]: Add openssl.
[native-inputs]: Add test data.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus
bc4eac5d79
gnu: python-pysam: Update to 0.20.0. 
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.20.0.
[build-system]: Use pyproject-build-system.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus
50948b8c3d
gnu: htslib: Update to 1.16. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.16.
 2022-12-21 23:12:40 +01:00
Ricardo Wurmus
e34639c262
gnu: pbbam: Use htslib 1.14. 
* gnu/packages/bioinformatics.scm (pbbam)[propagated-inputs]: Replace htslib
with htslib-1.14.
 2022-12-21 23:12:40 +01:00