Ludovic Courtès
3f536e01c1
gnu: mpich: Remove input labels and trailing #t in phases.
...
* gnu/packages/mpi.scm (mpich)[inputs]: Remove labels.
[arguments]: Remove trailing #t from phases.
2022-01-17 19:05:48 +01:00
Ludovic Courtès
7bf85e63c1
gnu: mpich: Allow compilation with GCC 10.
...
Fixes <https://issues.guix.gnu.org/53320 >
Reported by Clément Barthelemy <clement.barthelemy@inria.fr>.
* gnu/packages/mpi.scm (mpich)[arguments]: Add 'define-gfortran-wrapper'
phase.
2022-01-17 19:05:48 +01:00
Philippe SWARTVAGHER
b46c92c579
gnu: hwloc: Update to 2.7.0.
...
* gnu/packages/mpi.scm (hwloc-2): Update to 2.7.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-17 09:17:42 +01:00
Ludovic Courtès
8394619bac
gnu: Simplify package inputs.
...
This commit was obtained by running:
./pre-inst-env guix style
without any additional argument.
2021-12-13 17:48:25 +01:00
Ricardo Wurmus
9bc0f45df5
Merge remote-tracking branch 'origin/master' into core-updates-frozen
2021-12-05 19:17:41 +01:00
Ricardo Wurmus
2d6be35ea2
gnu: Add openmpi-c++.
...
* gnu/packages/mpi.scm (openmpi-c++): New variable.
2021-12-02 15:40:45 +01:00
Ludovic Courtès
377e9453ca
gnu: Use 'search-input-file' when looking for *.so and *.a.
...
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use
'search-input-file' when looking for *.a and *.so.
* gnu/packages/emulators.scm (dolphin-emu): Likewise.
* gnu/packages/engineering.scm (lepton-eda): Likewise.
(pcb): Likewise.
* gnu/packages/golang.scm (go-1.4): Likewise.
(go-1.14): Likewise.
* gnu/packages/haskell.scm (ghc-7): Likewise.
* gnu/packages/irods.scm (irods): Likewise.
* gnu/packages/language.scm (python2-tegaki-pygtk): Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-lzlib): Likewise.
(sbcl-cl-gobject-introspection): Likewise.
(sbcl-cl-ana): Likewise.
(sbcl-cl-libuv): Likewise.
(sbcl-cl-async): Likewise.
(sbcl-mcclim): Likewise.
(sbcl-zstd): Likewise.
(sbcl-cl-opengl): Likewise.
(sbcl-lev): Likewise.
(sbcl-cl-glfw3): Likewise.
* gnu/packages/machine-learning.scm (tensorflow): Likewise.
* gnu/packages/messaging.scm (utox): Likewise.
* gnu/packages/mpi.scm (java-openmpi): Likewise.
* gnu/packages/music.scm (jack-select): Likewise.
* gnu/packages/pascal.scm (fpc): Likewise.
* gnu/packages/python-crypto.scm (python-libnacl): Likewise.
* gnu/packages/python-xyz.scm (python-cairocffi): Likewise.
(python-pyev): Likewise.
(python-pytidylib): Likewise.
* gnu/packages/radio.scm (unixcw): Likewise.
* gnu/packages/rust.scm (rust-1.32): Likewise.
* gnu/packages/security-token.scm (opensc): Likewise.
(python-pyscard): Likewise.
* gnu/packages/selinux.scm (python-setools): Likewise.
* gnu/packages/spice.scm (libcacard): Likewise.
* gnu/packages/telephony.scm (libtgvoip): Likewise.
2021-07-24 16:23:23 +02:00
Ludovic Courtès
425ccde6ae
gnu: Use 'search-input-directory' when looking for C/C++ library headers.
...
* gnu/packages/arcan.scm (arcan)[arguments]: Use
'search-input-directory' for "include/libdrm" and "include/apr-1".
* gnu/packages/bioinformatics.scm (sailfish): Likewise for jellyfish.
* gnu/packages/boost.scm (boost-for-irods): Likewise for libcxx headers.
* gnu/packages/cedille.scm (cedille): Likewise for IAL headers.
* gnu/packages/compression.scm (snappy-with-clang6): Likewise for libcxx
headers.
* gnu/packages/cups.scm (hplip): Likewise for libusb headers.
* gnu/packages/emulators.scm (pcsxr): Likewise for libcdio headers.
* gnu/packages/game-development.scm (python2-renpy): Likewise for
fribidi headers.
* gnu/packages/games.scm (pokerth): Likewise for libircclient.
* gnu/packages/guile-xyz.scm (guile-persist): Likewise for Guile.
* gnu/packages/hurd.scm (hurd): Likewise for libtirpc.
* gnu/packages/irods.scm (irods, irods-client-icommands): Likewise for
libcxx, catch2, and nlohmann-json-cpp.
* gnu/packages/julia.scm (julia): Use 'search-input-file' for libuv's
errno.h.
* gnu/packages/kde-pim.scm (kdepim-runtime): Use
'search-input-directory' for "include/KF5".
(kmessagelib): Likewise.
* gnu/packages/kde.scm (kdeconnect): Likewise.
* gnu/packages/llvm.scm (clang-runtime-3.5): Likewise for libtirpc.
* gnu/packages/mpi.scm (openmpi): Likewise for "include/infiniband".
* gnu/packages/pumpio.scm (pumpa): Use 'search-input-file' for "tidy.h"
and "aspell.h".
* gnu/packages/radio.scm (dream): Use 'search-input-file' and
'search-input-directory' for pulseaudio, sndfile, etc.
* gnu/packages/selinux.scm (policycoreutils): Likewise for PAM and
libaudit.
* gnu/packages/serialization.scm (avro-cpp-1.9-for-irods): Likewise for
libcxx.
* gnu/packages/sync.scm (nextcloud-client): Likewise for "include/KF5".
* gnu/packages/video.scm (mkvtoolnix): Likewise for "include/gtest".
(libopenshot): Likewise for "include/UnitTest++".
* gnu/packages/virtualization.scm (criu): Likewise for libnl3 and for
protobuf file.
2021-07-24 16:23:23 +02:00
Ludovic Courtès
73622e613b
gnu: hwloc: Update to 2.5.0.
...
* gnu/packages/mpi.scm (hwloc-2): Update to 2.5.0.
2021-06-14 18:35:17 +02:00
Tobias Geerinckx-Rice
f1ecda50de
gnu: openmpi: Update to 4.1.1.
...
* gnu/packages/mpi.scm (openmpi): Update to 4.1.1.
2021-05-02 03:00:04 +02:00
Ludovic Courtès
ee21803288
gnu: openmpi: Update to 4.1.0.
...
* gnu/packages/mpi.scm (openmpi): Update to 4.1.0.
2021-03-19 13:23:27 +01:00
Ludovic Courtès
14aa86e50c
gnu: openmpi: Add 'release-monitoring-url' property.
...
* gnu/packages/mpi.scm (openmpi)[properties]: New field.
2021-03-19 13:23:26 +01:00
Ludovic Courtès
fe96f64110
gnu: hwloc: Add 'release-monitoring-url' property.
...
* gnu/packages/mpi.scm (hwloc-1)[properties]: New field.
2021-03-17 12:03:25 +01:00
Mark H Weaver
1a265842e6
gnu: Use PACKAGE/INHERIT in more places.
...
* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
2021-03-17 03:58:10 -04:00
Ludovic Courtès
1a1d0fe505
gnu: hwloc: Update to 2.4.1.
...
* gnu/packages/mpi.scm (hwloc-2): Update to 2.4.1. Adjust URL.
2021-03-10 18:01:47 +01:00
Ludovic Courtès
305eefc062
gnu: hwloc: Add "doc" output.
...
* gnu/packages/mpi.scm (hwloc-1)[outputs]: Add "doc".
[arguments]: Add 'move-man3-pages' phase.
2020-11-26 00:05:39 +01:00
Ludovic Courtès
c73496f433
gnu: mpich: Configure to use ucx.
...
Suggested by Maurice Brémond <Maurice.Bremond@inria.fr>.
Fixes bug when running test suites involving MPICH:
<https://issues.guix.gnu.org/39588#15 >.
* gnu/packages/mpi.scm (mpich)[arguments]: Pass "--with-device=ch4:ucx".
2020-11-02 14:59:34 +01:00
Ludovic Courtès
215b49a881
gnu: openmpi: Have 'mpirun' look for executables under $prefix.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Add
"--enable-mpirun-prefix-by-default" to #:configure-flags.
2020-09-24 17:53:01 +02:00
Greg Hogan
b96f4f0995
gnu: openmpi: Update to 4.0.5.
...
* gnu/packages/mpi.scm (openmpi): Update to 4.0.5.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-17 16:18:00 +02:00
Ludovic Courtès
06efbe2fba
gnu: hwloc@2: Update to 2.2.0.
...
* gnu/packages/mpi.scm (hwloc-2): Update to 2.2.0.
2020-03-31 14:55:42 +02:00
Ludovic Courtès
8db4e704dc
gnu: hwloc@2: Skip test that fails on emulated hardware.
...
Works around <https://bugs.gnu.org/40342 >.
* gnu/packages/mpi.scm (hwloc-2)[arguments]: Add
'skip-test-that-fails-on-qemu' phase.
2020-03-31 14:55:42 +02:00
Tobias Geerinckx-Rice
f9a69e9bae
gnu: openmpi: Use HTTPS home page.
...
* gnu/packages/mpi.scm (openmpi)[home-page]: Use HTTPS.
2020-03-10 22:02:19 +01:00
Tobias Geerinckx-Rice
9dd7082c48
gnu: openmpi: Update to 4.0.3.
...
* gnu/packages/mpi.scm (openmpi): Update to 4.0.3.
2020-03-10 22:02:19 +01:00
15e62623cc
gnu: mpi.scm: Use 'license:' prefix.
...
* gnu/packages/mpi.scm: Import (guix licenses) with the 'license:'
prefix.
2020-02-17 20:53:16 +02:00
Maurice Brémond
c70261bfb9
gnu: Add MPICH.
...
* gnu/packages/mpi.scm (mpich): New variable.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2020-02-17 18:22:06 +01:00
Ludovic Courtès
9b65dea806
gnu: Use the two-element 'define-deprecated' form where applicable.
...
* gnu/packages/guile.scm (guile-json): Use the two-element
'define-deprecated' form.
* gnu/packages/kde.scm (kdevplatform): Likewise.
* gnu/packages/mpi.scm (hwloc-2.0): Likewise.
* gnu/packages/qt.scm (qt): Likewise.
2020-01-12 00:19:09 +01:00
Ludovic Courtès
2d6f68aa3b
gnu: intel-mpi-benchmarks: Merge with "imb-openmpi".
...
* gnu/packages/mpi.scm (intel-mpi-benchmarks): Remove.
* gnu/packages/benchmark.scm (imb): Rename to...
(intel-mpi-benchmarks): ... this. Change 'name'. Update to 2019.3.
[arguments]: Remove 'build phase. Rewrite 'install phase. Pass
#:parallel-build? and #:make-flags.
(intel-mpi-benchmarks/openmpi): New variable.
(imb-openmpi): Rewrite in terms of 'deprecated-package'.
2019-12-20 22:35:12 +01:00
Ludovic Courtès
68ac34e120
gnu: openmpi: Increase priority of the PSM component.
...
* gnu/packages/patches/openmpi-psm2-priority.patch: Rename to...
* gnu/packages/patches/openmpi-mtl-priorities.patch: ... this. Add hunk
to change the priority of PSM.
* gnu/packages/mpi.scm (openmpi)[source]: Adjust accordingly.
* gnu/local.mk (dist_patch_DATA): Likewise.
2019-11-29 15:54:19 +01:00
Ludovic Courtès
0d8a8234b5
gnu: hwloc: Adjust references to 'hwloc'.
...
This is a followup to 8ec7ca22d3
2019-11-19 11:32:48 +01:00
Ludovic Courtès
8ec7ca22d3
gnu: hwloc: Default to 2.x.
...
* gnu/packages/mpi.scm (hwloc): Rename to...
(hwloc-1): ... this.
(hwloc-2): Adjust 'inherit' clause accordingly.
(hwloc): New variable.
2019-11-19 10:51:53 +01:00
Ludovic Courtès
b1077c2234
gnu: openmpi: Silence UCX warnings when running tests.
...
* gnu/packages/mpi.scm (%openmpi-setup): Set "UCX_LOG_LEVEL".
2019-11-16 17:43:49 +01:00
Ludovic Courtès
6f160c5c38
Revert "gnu: openmpi: Pass explicit "--with-*" configure flags."
...
This reverts commit eaa52b5baa
2019-11-15 23:28:17 +01:00
Ludovic Courtès
96a469f1cd
gnu: openmpi: Fix typo.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: For UCX, check the supported
systems of UCX, not PSM2.
2019-11-15 23:28:17 +01:00
Ludovic Courtès
faab7082ab
gnu: openmpi: Raise the priority of the PSM2 component.
...
This allows us to get better performance by default on machines with
OmniPath hardware.
* gnu/packages/patches/openmpi-psm2-priority.patch: New file.
* gnu/packages/mpi.scm (openmpi)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-11-15 17:52:45 +01:00
Ludovic Courtès
58a536bb1b
gnu: openmpi, slurm: Switch to hwloc 2.x.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2019-11-15 17:52:45 +01:00
Ludovic Courtès
8c8e108978
gnu: hwloc: Update to 2.1.0.
...
* gnu/packages/mpi.scm (hwloc-2.0): Rename to...
(hwloc-2): ... this. Update to 2.1.0
(hwloc-2.0): Define as deprecated.
* gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly.
2019-11-15 17:52:45 +01:00
Ludovic Courtès
c1ea4c0793
gnu: Add Intel MPI Benchmarks.
...
* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable.
2019-11-15 17:52:44 +01:00
Ludovic Courtès
eaa52b5baa
gnu: openmpi: Pass explicit "--with-*" configure flags.
...
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx",
"--with-psm", and "--with-psm2".
2019-11-15 17:52:44 +01:00
Tobias Geerinckx-Rice
fe39020011
gnu: python-mpi4py: Update to 3.0.3.
...
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.3.
2019-11-08 23:11:01 +01:00
Ludovic Courtès
8ba94edd8f
gnu: openmpi: Add dependency on UCX when supported.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add UCX conditionally.
2019-10-15 13:58:45 +02:00
Ludovic Courtès
8f02e5ac81
gnu: openmpi: Update to 4.0.2.
...
* gnu/packages/mpi.scm (openmpi): Update to 4.0.2.
2019-10-10 17:23:52 +02:00
Marius Bakke
97149c5767
gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7.
...
These variables are no longer set in the build environment by default. GCC
still respects these search paths and treats them as "system headers" so we
can continue to use them, just not expect them to be available.
* gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from
C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH.
* gnu/packages/games.scm (kiki)[arguments]: Likewise.
* gnu/packages/networking.scm (hcxtools)[arguments]: Likewise.
* gnu/packages/synergy.scm (synergy)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise.
* gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise.
2019-07-14 18:13:34 +02:00
Paul Garlick
2c12be76cd
gnu: python-mpi4py: Update to 3.0.2.
...
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.2.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-06-21 09:04:37 +02:00
Tobias Geerinckx-Rice
6e36c6ed8f
gnu: openmpi: Update to .
...
* gnu/packages/mpi.scm (openmpi): Update to .
mpi
openmpi
2019-04-16 00:05:04 +02:00
Ricardo Wurmus
fa5a253866
gnu: Add java-openmpi.
...
* gnu/packages/mpi.scm (java-openmpi): New variable.
2019-03-18 18:24:45 +01:00
Eric Bavier
5cfed7efc8
gnu: openmpi: Let configure enable PSM based on inputs.
...
This fixes OpenMPI builds on systems not supported by the PSM packages.
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove '--enable-psm' and
'--enable-psm2' from #:configure-flags.
2019-02-20 22:18:45 -06:00
Paul Garlick
b49c8b9ef8
gnu: python-mpi4py: Update to 3.0.1.
...
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.1.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-02-18 21:41:12 +01:00
Ricardo Wurmus
e9823f9ca3
gnu: openmpi: Add InfiniBand support.
...
* gnu/packages/mpi.scm (openmpi)[inputs]: Add opensm.
[arguments]: Add openib configure flags; add build phase
"find-opensm-headers".
2019-02-17 09:59:46 +01:00
Eric Bavier
41313acebf
gnu: openmpi: Upgrade to 4.0.0.
...
* gnu/packages/linux.scm (psm)[arguments]: Add 'patch-sysmacros phase to fix
"undefined reference to `minor'" errors while linking against
libinfinipath.so.
* gnu/packages/mpi.scm (openmpi): Upgrade to 4.0.0.
[inputs]: Add libevent.
[arguments]: Simplify configure-flags. Use system libevent. Adjust romio
version strings.
(%openmpi-setup): Use OMPI_MCA_rmaps_base_mapping_policy for oversubscription.
2019-02-09 00:50:16 -06:00
Ludovic Courtès
b07712bfb1
gnu: openmpi: Add dependency on SLURM.
...
This allows users to run Open MPI programs with 'srun'.
* gnu/packages/mpi.scm (openmpi)[inputs]: Add SLURM.
[arguments]: Add "--with-pmi" to #:configure-flags.
2019-02-07 15:46:45 +01:00
