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85902 Commits

Author SHA1 Message Date
Arun Isaac 29b594fa16
gnu: nyacc: Update to 1.05.1. 
* gnu/packages/mes.scm (nyacc): Update to 1.05.1.
 2021-11-25 10:15:57 +05:30
Ludovic Courtès f9b1bb916c
daemon: Read substitute nar size as 'unsigned long long'. 
Fixes <https://issues.guix.gnu.org/46212>.
Reported by Christopher Baines <mail@cbaines.net>.

Previously, the nar size returned by 'guix substitute' would be read as
an 'int'; thus, values above 2^31 - 1 would be read and then stored as
negative integers in the database.

Regression introduced in 9dfa20a22a.

* nix/libstore/build.cc (SubstitutionGoal::finished): Use templatized
'string2Int' instead of 'std::atoi' to get an 'unsigned long long',
which is the type of 'hash.second'.
* tests/store.scm ("substitute and large size"): New test.
 2021-11-25 00:17:21 +01:00
Ludovic Courtès 1eb40a6dc4
daemon: Read unsigned nar size and download size from substituter. 
Fixes <https://issues.guix.gnu.org/51983>.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.

* nix/libstore/local-store.cc (LocalStore::querySubstitutablePathInfos):
Expect 'unsigned long long' for 'downloadSize' and 'narSize'.
* tests/store.scm ("substitute query and large size"): New test.
 2021-11-25 00:17:21 +01:00
Tobias Geerinckx-Rice a4cbd31c5c
home: services: bash: Only source /etc/bashrc if it exists. 
* gnu/home/services/shells.scm (home-bash-configuration):
Check whether /etc/bashrc exists before trying to ‘source’ it.

Reported by guixy on #guix.
 2021-11-24 19:46:39 +01:00
Arun Isaac c47a45ca7e
gnu: racket: Remove article from the beginning of the synopsis. 
* gnu/packages/racket.scm (racket)[synopsis]: Remove article from the
beginning.
 2021-11-25 00:07:10 +05:30
jgart 6de284e832
gnu: racket: Update to 8.3. 
* gnu/packages/racket.scm (racket-minimal, racket): Update to 8.3.
* gnu/packages/racket.scm (racket-minimal)[source]: Remove
racket-minimal-backport-1629887.patch from patches.
* gnu/packages/patches/racket-minimal-backport-1629887.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2021-11-24 23:59:37 +05:30
Aleksandr Vityazev 3aac086c3f
gnu: recordmydesktop: Update to 0.4.0. 
* gnu/packages/video.scm (recordmydesktop): Update to 0.4.0.
[source]: Update URI.
[home-page]: Update home-page accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-11-24 13:03:00 -05:00
Nicolas Goaziou 146c35ca81
gnu: emacs-csharp-mode: Update to 1.1.1. 
* gnu/packages/emacs-xyz.scm (emacs-csharp-mode): Update to 1.1.1.
 2021-11-24 17:14:38 +01:00
Nicolas Goaziou 538331ac3e
gnu: emacs-elfeed-score: Update to 1.2.1. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.1.
 2021-11-24 17:12:35 +01:00
Nicolas Goaziou 1172fa8cc4
gnu: scintilla: Update to 5.1.4. 
* gnu/packages/text-editors.scm (scintilla): Update to 5.1.4.
 2021-11-24 16:50:38 +01:00
Nicolas Goaziou 2b7b736654
gnu: mame: Update to 0.238. 
* gnu/packages/emulators.scm (mame): Update to 0.238.
 2021-11-24 16:39:26 +01:00
Ricardo Wurmus c8005b63fa
gnu: Add r-astsa. 
* gnu/packages/cran.scm (r-astsa): New variable.
 2021-11-24 16:37:14 +01:00
Nicolas Goaziou f1d47be767
gnu: emacs-pyim: Update to 3.9.5. 
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.9.5.
 2021-11-24 16:18:39 +01:00
Pierre Neidhardt e68a958110
gnu: sbcl-osicat: Update to 20210928. 
* gnu/packages/lisp-xyz.scm (sbcl-osicat): Update to 20210928.
 2021-11-24 14:56:51 +01:00
Julien Lepiller 4ac084e52d
gnu: ocaml-batteries: Update to 3.3.0. 
* gnu/packages/ocaml.scm (ocaml-batteries): Update to 3.3.0.
(ocaml4.07-batteries): New variable.
 2021-11-24 14:51:05 +01:00
Julien Lepiller db61ad142d
gnu: Add ocaml-benchmark. 
* gnu/packages/ocaml.scm (ocaml-benchmark): New variable.
 2021-11-24 14:50:46 +01:00
Ricardo Wurmus 9cc8ee15d0
gnu: geary: Remove trailing #T. 
* gnu/packages/gnome.scm (geary)[arguments]: Remove trailing #T from 'check
phase.
 2021-11-24 13:52:36 +01:00
Ricardo Wurmus d53703e4e2
gnu: geary: Add missing input. 
* gnu/packages/gnome.scm (geary)[native-inputs]: Add
gsettings-desktop-schemas for tests.
 2021-11-24 13:52:03 +01:00
Ricardo Wurmus 651fc759d7
gnu: r-s4vectors: Update to 0.32.3. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.3.
 2021-11-24 13:06:53 +01:00
Ricardo Wurmus 5e806fbaf4
gnu: r-mixomics: Update to 6.18.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.1.
 2021-11-24 13:06:53 +01:00
Ricardo Wurmus 5c6225b641
gnu: r-xcms: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus 370bb5851a
gnu: r-dose: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus 010806f78a
gnu: r-genomicranges: Update to 1.46.1. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus cfeccf8e90
gnu: r-biocparallel: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus 67de75778f
gnu: r-biomart: Update to 2.50.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus 639bfeca2b
gnu: Add r-bsgenome-drerio-ucsc-danrer11. 
* gnu/packages/bioconductor.scm (r-bsgenome-drerio-ucsc-danrer11): New variable.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus a61e8f949b
gnu: r-fdrtool: Update to 1.2.17. 
* gnu/packages/statistics.scm (r-fdrtool): Update to 1.2.17.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus 80c288f785
gnu: r-car: Update to 3.0-12. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-12.
[propagated-inputs]: Remove r-rio.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus 8e3189dc92
gnu: r-nloptr: Update to 1.2.2.3. 
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.3.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus 618134a410
gnu: r-robust: Update to 0.6-1. 
* gnu/packages/statistics.scm (r-robust): Update to 0.6-1.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus 8d0ab1e0c6
gnu: r-mclust: Update to 5.4.8. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.8.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus c0f8456709
gnu: r-glmnet: Update to 4.1-3. 
* gnu/packages/statistics.scm (r-glmnet): Update to 4.1-3.
[propagated-inputs]: Add r-rcpp and r-rcppeigen.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus 57ad700c2c
gnu: r-dt: Update to 0.20. 
* gnu/packages/statistics.scm (r-dt): Update to 0.20.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus a385793674
gnu: r-snow: Update to 0.4-4. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-4.
 2021-11-24 12:13:13 +01:00
Ricardo Wurmus b288e1f446
gnu: r-rcpparmadillo: Update to 0.10.7.3.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.7.3.0.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus 45ff2f56a0
gnu: r-readr: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-readr): Update to 2.1.0.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus d1324bcf56
gnu: r-git2r: Update to 0.29.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.29.0.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus 9482ea9806
gnu: r-backports: Update to 1.3.0. 
* gnu/packages/statistics.scm (r-backports): Update to 1.3.0.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus cbe234924f
gnu: r-tibble: Update to 3.1.6. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.6.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus 360cfbcf71
gnu: r-crayon: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-crayon): Update to 1.4.2.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus 912ad5cdd3
gnu: r-microbenchmark: Update to 1.4.9. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4.9.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus cd7d961177
gnu: r-paws-common: Update to 0.3.14. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.3.14.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus b1010b9525
gnu: r-ztree: Update to 1.0.7. 
* gnu/packages/cran.scm (r-ztree): Update to 1.0.7.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus d814232f89
gnu: r-keras: Update to 2.7.0. 
* gnu/packages/cran.scm (r-keras): Update to 2.7.0.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus 7ee06c2b79
gnu: r-tensorflow: Update to 2.7.0. 
* gnu/packages/cran.scm (r-tensorflow): Update to 2.7.0.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus 7c2e3bb288
gnu: r-qs: Update to 0.25.1.1. 
* gnu/packages/cran.scm (r-qs): Update to 0.25.1.1.
 2021-11-24 12:13:12 +01:00
Ricardo Wurmus 049fb4da7f
gnu: r-vroom: Update to 1.5.6. 
* gnu/packages/cran.scm (r-vroom): Update to 1.5.6.
 2021-11-24 12:13:11 +01:00
Ricardo Wurmus 4540c62a24
gnu: r-tzdb: Update to 0.2.0. 
* gnu/packages/cran.scm (r-tzdb): Update to 0.2.0.
 2021-11-24 12:13:11 +01:00
Ricardo Wurmus fb0f3ccce7
gnu: r-stars: Update to 0.5-4. 
* gnu/packages/cran.scm (r-stars): Update to 0.5-4.
 2021-11-24 12:13:11 +01:00
Ricardo Wurmus 6b6264eca4
gnu: r-downlit: Update to 0.4.0. 
* gnu/packages/cran.scm (r-downlit): Update to 0.4.0.
[propagated-inputs]: Add r-desc and r-memoise.
 2021-11-24 12:13:11 +01:00