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Author SHA1 Message Date
Efraim Flashner
3dcc74d3ae
gnu: julia-simd: Update to 3.4.0. 
* gnu/packages/julia-xyz.scm (julia-simd): Update to 3.4.0.
 2022-01-10 15:15:39 +02:00
zimoun
67ff108806
gnu: Add julia-bioalignments. 
* gnu/packages/julia-xyz.scm (julia-bioalignments): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:38 +02:00
zimoun
782eaa180e
gnu: Add julia-intervaltrees. 
* gnu/packages/julia-xyz.scm (julia-intervaltrees): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:37 +02:00
zimoun
5d697044a8
gnu: Add julia-biosequences. 
* gnu/packages/julia-xyz.scm (julia-biosequences): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:37 +02:00
zimoun
46472ae545
gnu: Add julia-biosymbols. 
* gnu/packages/julia-xyz.scm (julia-biosymbols): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:36 +02:00
zimoun
4486b111d3
gnu: Add julia-yaml. 
* gnu/packages/julia-xyz.scm (julia-yaml): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:36 +02:00
zimoun
17406e2779
gnu: Add julia-stringencodings. 
* gnu/packages/julia-xyz.scm (julia-stringencodings): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:35 +02:00
zimoun
542db364f5
gnu: Add julia-automa. 
* gnu/packages/julia-xyz.scm (julia-automa): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:35 +02:00
zimoun
7e8f5176c4
gnu: Add julia-scanbyte. 
* gnu/packages/julia-xyz.scm (julia-scanbyte): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:34 +02:00
zimoun
9bd4c35aac
gnu: Add julia-simd. 
* gnu/packages/julia-xyz.scm (julia-simd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:34 +02:00
zimoun
1305d9f3b1
gnu: Add julia-twiddle. 
* gnu/packages/julia-xyz.scm (julia-twiddle): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:33 +02:00
zimoun
cc49040833
gnu: Add julia-indexablebitvectors. 
* gnu/packages/julia-xyz.scm (julia-indexablebitvectors): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:33 +02:00
zimoun
ccc13b9e0a
gnu: Add julia-biogenerics. 
* gnu/packages/julia-xyz.scm (julia-biogenerics): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:32 +02:00
zimoun
3f0b76bdcc
gnu: julia-documenter: Adjust style. 
* gnu/packages/julia-xyz.scm (julia-documenter)[propagated-inputs] Remove labels.
[inputs, native-inputs]: Remove labels.
[arguments]: Remove unnecessary return '#t'. Use search-input-file to
find pip.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:32 +02:00
zimoun
b8088f9186
gnu: julia-documentertools: Adjust style. 
* gnu/packages/julia-xyz.scm (julia-documentertools)[inputs]: Remove label.
[propagated-inputs]: Adjust.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:32 +02:00
zimoun
79ba1214b0
gnu: julia-zygote: Adjust style. 
* gnu/packages/julia-xyz.scm (julia-zygote)[propagated-inputs]: Remove labels.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:31 +02:00
zimoun
146e83d380
gnu: julia-xyz.scm: Adjust style. 
* gnu/packages/julia-xyz.scm: Align all inputs.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-01-10 15:15:15 +02:00
Ludovic Courtès
e3196755e6
gnu: Further simplify package inputs. 
This is the result of running:

  ./pre-inst-env guix style --input-simplification=safe

and manually undoing changes on a dozen of packages to reduce
rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
 2021-12-13 22:15:07 +01:00
Ludovic Courtès
8394619bac
gnu: Simplify package inputs. 
This commit was obtained by running:

  ./pre-inst-env guix style

without any additional argument.
 2021-12-13 17:48:25 +01:00
Ricardo Wurmus
9bc0f45df5
Merge remote-tracking branch 'origin/master' into core-updates-frozen 2021-12-05 19:17:41 +01:00
zimoun
bd746917a2
gnu: julia-forwarddiff: Disable tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-forwarddiff)[arguments]<#:tests?>:
Conditionally disable tests.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:33 +02:00
zimoun
82586916be
gnu: julia-geometrybasics: Fix tests on i686-linux. 
* gnu/packages/julia-xyz (julia-geometrybasics)[arguments]<#:phases>:
Conditionally replace the incorrect type in test suite.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:33 +02:00
zimoun
eb4f1fcf74
gnu: julia-structarrays: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-structarrays)[arguments]<#:phases>:
Conditionally replace the incorrect type in the test suite.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:32 +02:00
zimoun
afd35e8e9c
gnu: julia-mutablearithmetics: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-mutablearithmetics)[arguments]<#:phases>:
Conditionally disable the failing test.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:32 +02:00
zimoun
630824a238
gnu: julia-woodburymatrices: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-woodburymatrices)[arguments]<#:phases>:
Conditionally disable the failing test.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:32 +02:00
zimoun
828012ed9f
gnu: julia-intervalsets: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-intervalsets)[arguments]<#:phases>:
Conditionally disable the failing test.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:32 +02:00
zimoun
29c0410086
gnu: julia-reversediff: Disable tests on i686-linux. 
* gnu/packages/julia-xyz (julia-reversediff)[arguments]<#:tests?>:
Conditionally disable tests.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:31 +02:00
zimoun
28d530ea44
gnu: julia-interpolations: Disable tests in i686-linux. 
* gnu/packages/julia-xyz.scm (julia-interpolations)[arguments]<#:tests?>:
Conditionally disable tests.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:31 +02:00
zimoun
e3c15b0bfc
gnu: julia-arrayinterface: Disable tests for i686. 
* gnu/packages/julia-xyz.scm (julia-arrayinterface)[arguments]<#:tests?>:
Conditionally disable tests.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:31 +02:00
zimoun
7c8e9cbfa9
gnu: julia-mappedarrays: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-mappedarrays)[arguments]<#:phases>:
Conditionally replace the incorrect type in test suite.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:30 +02:00
zimoun
dcd7c950c6
gnu: julia-blockarrays: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-blockarrays)[arguments]<#:phases>:
Conditionally replace the incorrect type in test suite.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:30 +02:00
zimoun
557caa4e2c
gnu: julia-lazyarrays: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-lazyarrays)[arguments]<#:phases>:
Conditionally replace the incorrect type in test suite.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:30 +02:00
zimoun
dbad333481
gnu: julia-configurations: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-configurations)[arguments]<#:phases>:
Conditionally replace the incorrect type in test suite.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:30 +02:00
zimoun
a31a4517b6
gnu: julia-finitedifferences: Fix tests on i686-linux. 
* gnu/packages/julia-xyz (julia-finitedifferences)[arguments]<#:phases>:
Conditionnally disable the failing test.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:29 +02:00
zimoun
2a749f34e5
gnu: julia-benchmarktools: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-benchmarktools)[arguments]<#:phases>:
Conditionnally disable the failing tests.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:29 +02:00
zimoun
7fee8a46fb
gnu: julia-datastructures: Fix tests on i686-linux. 
* gnu/packages/julia-xyz.scm (julia-datastructures)[arguments]<#:phases>:
Conditionnally disable the failing test.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-04 19:50:29 +02:00
jgart
dc438820c3
gnu: Add julia-millboard. 
* gnu/packages/julia-xyz.scm (julia-millboard): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-01 14:08:46 +02:00
jgart
f303eaa31b
gnu: Add julia-jive. 
* gnu/packages/julia-xyz.scm (julia-jive): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-01 14:08:46 +02:00
jgart
2eca48e310
gnu: Add julia-softglobalscope. 
* gnu/packages/julay-xyz.scm (julia-softglobalscope): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-12-01 14:08:46 +02:00
zimoun
9b48948a0c
gnu: julia-unitful: Disable parallel tests. 
* gnu/packages/julia-xyz.scm (julia-unitful)[arguments]: Disable parallel
tests.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-27 01:22:33 -05:00
zimoun
2ce8e5e124
gnu: julia-requires: Disable parallel tests. 
* gnu/packages/julia-xyz.scm (julia-requires)[arguments]: Disable parallel
tests.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-27 01:22:33 -05:00
zimoun
dfad64e7b0
gnu: julia-interpolations: Disable parallel tests. 
* gnu/packages/julia-xyz.scm (julia-interpolations)[arguments]: Disable
parallel tests.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-27 01:22:33 -05:00
zimoun
017f9a3515
gnu: julia-aqua: Disable parallel tests. 
* gnu/packages/julia-xyz.scm (julia-aqua)[arguments]: Disable parallel tests.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-27 01:22:33 -05:00
Efraim Flashner
11446953ba
gnu: julia-pycall: Update to 1.92.5. 
* gnu/packages/julia-xyz.scm (julia-pycall): Update to 1.92.5.
 2021-11-16 14:40:03 +02:00
Jean-Baptiste Volatier
3af351a7de
build-system/julia: Enable Julia Pkg to find installed packages. 
Julia's built-in package manager (Pkg) looks for packages in
JULIA_DEPOT_PATH/packages/PACKAGENAME/XXXX, where XXXX is a string
encoding package UUID and SHA1 of files.  The link-depot phase creates
a link at the correct location to allow Pkg to find packages that were
already installed by Guix.

* guix/build/julia-build-system.scm (link-depot): New phase.
(%package-path): Modified package path from packages/ to loadpath/.
(project.toml->uuid): New procedure, retrive package uuid from TOML file.
(precompile, check): Adjust to the change in paths.
(%standard-phases): Add link-depot phase.
(julia-build): Add julia-package-uuid keyword.
* guix/build-system/julia.scm (julia-build): Also use the
julia-package-uuid keyword.
* gnu/packages/julia-jll.scm (julia-bzip2-jll, julia-cairo-jll,
julia-compilersupportlibraries-jll, julia-expat-jll, julia-ffmpeg-jll,
julia-fontconfig-jll, julia-freetype2-jll, julia-fribidi-jll,
julia-gettext-jll, julia-glib-jll, julia-gr-jll, julia-gumbo-jll,
julia-imagemagick-jll, julia-jllwrappers-jll, julia-jpegturbo-jll,
julia-lame-jll, julia-libass-jll, julia-libfdk-aac-jll,
julia-libffi-jll, julia-libgcrypt-jll, julia-libglvnd-jll,
julia-libgpg-error-jll, juli-libiconv-jll, julia-libmount-jll,
julia-libpng-jll, julia-libsass-jll, julia-libtiff-jll,
julia-libuuid-jll, julia-libvorbis-jll, julia-lzo-jll,
julia-mbedtls-jll, julia-ogg-jll, julia-openspecfun-jll,
julia-openssl-jll, julia-opus-jll, julia-pcre-jll, julia-pixman-jll,
julia-qt5base-jll, julia-wayland-jll, julia-wayland-protocols-jll,
julia-x264-jll, julia-x265-jll, julia-xkbcommon-jll, julia-xml2-jll,
julia-xorg-libpthread-stubs-jll, julia-xorg-libx11-jll,
julia-xorg-libxau-jll, julia-xorg-libxcb-jll, julia-xorg-libxcursor-jll,
julia-xorg-libxdmcp-jll, julia-xorg-libxext-jll,
julia-xorg-libxfixes-jll, julia-xorg-libxi-jll,
julia-xorg-libxinerama-jll, julia-xorg-libxkbfile-jll,
julia-xorg-libxrandr-jll, julia-xorg-libxrender-jll,
julia-xorg-xcb-util-jll, julia-xorg-xcb-util-keysyms-jll,
julia-xorg-xcb-util-renderutil-jll, julia-xorg-xcb-util-wm-jll,
julia-xorg-xkbcomp-jll, julia-xorg-xkeyboard-config-jll,
julia-xorg-xtrans-jll, julia-xslt-jll, julia-zlib-jll, julia-zstd-jll)
[argument]: Adjust the order of the phases to the change in the
julia-build-system.
* gnu/packages/julia-xyz.scm (julia-bufferedstreams, julia-calculus,
julia-dataframes, julia-datavalues, julia-distances, julia-documenter,
julia-dualnumbers, julia-ellipsisnotation, julia-expronicon,
julia-fileio, julia-fixedpointnumbers, julia-functionwrappers,
julia-fuzzycompletions, julia-genericlinearalgebra, julia-genericschur,
julia-geometrybasics, julia-imagemagick, julia-infinity,
julia-matrixfactorizations, julia-media, julia-missings, julia-nnlib,
julia-optimtestproblems, julia-orderedcollections, julia-prettytables,
julia-pycall, julia-quadmath, julia-safetests, julia-stackviews)
[arguments]: Correct paths to reflect change of %package-path modify
order of phases as link-depot needs to run on an unmodified src
directory add package-name-uuid keyword argument to packages without
Project.toml file.
* gnu/packages/julia.scm (julia)[native-search-paths]: Correct paths to
reflect change of %package-path modify order of phases as link-depot
needs to run on an unmodified src directory.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-11-16 14:39:51 +02:00
Efraim Flashner
9c3b2cf0b3
gnu: Add julia-infinity. 
* gnu/packages/julia-xyz.scm (julia-infinity): New variable.
 2021-10-24 11:41:20 +03:00
Efraim Flashner
caaf3a7bc6
gnu: Add julia-geometrybasics. 
* gnu/packages/julia-xyz.scm (julia-geometrybasics): New variable.
 2021-10-24 11:41:20 +03:00
Efraim Flashner
49996b2763
gnu: Add julia-gr. 
* gnu/packages/julia-xyz.scm (julia-gr): New variable.
 2021-10-24 11:41:20 +03:00
zimoun
14f8d58752
gnu: Add julia-media. 
* gnu/packages/julia-xyz.scm (julia-media): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-10-19 10:22:12 +03:00
zimoun
87a6109c33
gnu: Add julia-codeczlib. 
* gnu/packages/julia-xyz.scm (julia-codeczlib): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-10-19 10:22:11 +03:00