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74590 commits

Author SHA1 Message Date
Ricardo Wurmus
e46b5ad21b
gnu: r-multiassayexperiment: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.20.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
c208e75fe4
gnu: r-grohmm: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.28.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
2adab76473
gnu: r-experimenthub: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
f1014a64c9
gnu: r-biocviews: Update to 1.62.1.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.62.1.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
d13db6d1c5
gnu: r-biocstyle: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.22.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
388fa5f020
gnu: r-biocgraph: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.56.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
fa77f4f154
gnu: r-bioccheck: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.30.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
755fd4d87d
gnu: r-ebarrays: Update to 2.58.0.
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.58.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
71eae6eabe
gnu: r-reactomepa: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.38.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
7ea681d5d5
gnu: r-graphite: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.40.0.
[native-inputs]: Remove r-knitr.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
7034456e2c
gnu: r-biobroom: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.26.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
27791b2517
gnu: r-bioassayr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.32.0.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
9e6f77714b
gnu: r-chemminer: Update to 3.46.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.46.0.
[propagated-inputs]: Add r-jsonlite and r-stringi.
2021-11-07 22:34:54 +00:00
Ricardo Wurmus
97e275b7b9
gnu: r-bigpint: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.10.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
8eef74bce1
gnu: r-biggr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.30.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
2b5e606027
gnu: r-hyperdraw: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.46.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
14b524486d
gnu: r-hypergraph: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.66.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
66674da16d
gnu: r-rsbml: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.52.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
4100392b19
gnu: r-bifet: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.14.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
afb55b19d4
gnu: r-bicare: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.52.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
69362a6222
gnu: r-bhc: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.46.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
8c6a8a6072
gnu: r-bgx: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.60.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
1feba301d6
gnu: r-bgmix: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.54.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
fcaf2e80ad
gnu: r-universalmotif: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.1.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
cdb78e54e6
gnu: r-unifiedwmwqpcr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.30.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
f61d3ac6ce
gnu: r-htqpcr: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.48.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
de8a55d138
gnu: r-variancepartition: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.0.
[propagated-inputs]: Remove r-colorramps; add r-matrix and r-rlang.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
beb530df2a
gnu: r-variantfiltering: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.30.0.
2021-11-07 22:34:53 +00:00
Ricardo Wurmus
8dbca889e0
gnu: r-timeseriesexperiment: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.12.0.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
a326c65428
gnu: r-wavcluster: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.28.0.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
bbfeee3ee4
gnu: r-reqon: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.40.0.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
10a7837bb8
gnu: r-seqbias: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.42.0.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
8305dd2411
gnu: r-bigmelon: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.20.0.
[propagated-inputs]: Add r-illuminaio.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
0837205009
gnu: r-gdsfmt: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.30.0.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
f3e1fe2b2f
gnu: r-watermelon: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.0.0.
[native-inputs]: Add r-knitr.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
316bf235c0
gnu: r-roc: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.70.0.
[propagated-inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
26e3242dba
gnu: r-genie3: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.16.0.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
cace0f424b
gnu: r-circrnaprofiler: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.8.0.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
6f9be50deb
gnu: r-cicero: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.12.0.
2021-11-07 22:34:52 +00:00
Ricardo Wurmus
75aed1303a
gnu: r-chicago: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.22.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
398007448c
gnu: r-rcistarget: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.14.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
20d81fa969
gnu: r-depecher: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.10.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
765ed6a2c9
gnu: r-mixomics: Update to 6.17.26.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.17.26.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
789958567e
gnu: r-flowsom: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.2.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
76a0df65d2
gnu: r-cytoml: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.6.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
b6410270ba
gnu: r-opencyto: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.6.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
101cad4791
gnu: r-flowstats: Update to 4.6.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.6.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
42df07647a
gnu: r-flowworkspace: Update to 4.6.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.6.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
a27ff891a6
gnu: r-rprotobuflib: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.6.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
007e62be63
gnu: r-flowclust: Update to 3.32.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.32.0.
[inputs]: Remove gsl.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
3bffe05708
gnu: r-flowviz: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.58.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
833c945998
gnu: r-ggcyto: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.22.0.
2021-11-07 22:34:51 +00:00
Ricardo Wurmus
224eccca7a
gnu: r-ncdfflow: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.40.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
9e01b4118e
gnu: r-flowmeans: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.54.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
fe947b3c0e
gnu: r-flowcore: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.6.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
6e07dec942
gnu: r-cytolib: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
9e3ee89786
gnu: r-consensusclusterplus: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.58.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
311adddab3
gnu: r-flowutils: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.58.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
c58ed007a2
gnu: r-rsubread: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
4940f6d680
gnu: r-annotatr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.20.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
b960dc7be5
gnu: r-biosigner: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.22.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
1e2401b767
gnu: r-ropls: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
970e3e291e
gnu: r-multidataset: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.22.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
505b5d2685
gnu: r-birewire: Update to 3.26.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
c3ce59c624
gnu: r-rqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.28.0.
2021-11-07 22:34:50 +00:00
Ricardo Wurmus
e2aa710ca4
gnu: r-quasr: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.34.0.
[propagated-inputs]: Remove r-biocmanager.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
80980d827a
gnu: r-rhisat2: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.10.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
0187dd1a1d
gnu: r-sgseq: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.28.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
1b455ccb4b
gnu: r-rbowtie: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.34.0.
[inputs]: Remove zlib.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
0e507e0059
gnu: r-iclusterplus: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.30.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
f592a0a4ee
gnu: r-biocfilecache: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
2a9f215cd1
gnu: r-arrmnormalization: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.34.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
5d77708905
gnu: r-progeny: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.16.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
ba9573b14e
gnu: r-rbowtie2: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.0.0.
[inputs]: Add samtools.
[propagated-inputs]: Add r-magrittr and r-rsamtools.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
efbe72addb
gnu: r-zfpkm: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.16.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
eb5f243f1b
gnu: r-zinbwave: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.16.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
d43703c41a
gnu: r-webbioc: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.66.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
b058ff1f75
gnu: r-widgettools: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.72.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
a4ab371edf
gnu: r-wiggleplotr: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.18.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
2704f4d596
gnu: r-wrench: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.12.0.
2021-11-07 22:34:49 +00:00
Ricardo Wurmus
e06acf2682
gnu: r-xcms: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.0.
[propagated-inputs]: Add r-msfeatures.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
482cec7a53
gnu: r-massspecwavelet: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
972e9f4224
gnu: r-roar: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.30.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
b00d8a1e74
gnu: r-yarn: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.20.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
13d51fe643
gnu: r-quantro: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.28.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
7fc5084e00
gnu: r-gcrma: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.66.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
240e1f0598
gnu: r-yapsa: Update to 1.19.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.19.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
2b769d0981
gnu: r-somaticsignatures: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.30.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
cb48316936
gnu: r-gtrellis: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.26.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
6a4b381268
gnu: r-yamss: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.20.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
4c18a6b644
gnu: r-ebimage: Update to 4.36.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.36.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
a69776dcb5
gnu: r-aucell: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.16.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
7b6e7ac7bf
gnu: r-allelicimbalance: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.32.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
776c53a967
gnu: r-annotationtools: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.68.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
e79f4779ce
gnu: r-abaenrichment: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.24.0.
2021-11-07 22:34:48 +00:00
Ricardo Wurmus
b7057dbac6
gnu: r-gofuncr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.14.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
46de5a7503
gnu: r-atacseqqc: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
2ba1756960
gnu: r-genomicscores: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
0b8b2b63a2
gnu: r-motifstack: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.38.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
9a27f82d03
gnu: r-motifbreakr: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.8.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
a906e93378
gnu: r-motifdb: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.36.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
38ca6643c4
gnu: r-rgadem: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
4f6f03fd6e
gnu: r-bacon: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.22.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
6b27532fea
gnu: r-abseqr: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.12.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
172cddcbec
gnu: r-a4: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
c0207d4f7c
gnu: r-a4base: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
9b249fc8a9
gnu: r-a4reporting: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
0b06e8ee13
gnu: r-a4preproc: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
c179aae47e
gnu: r-a4classif: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.42.0.
2021-11-07 22:34:47 +00:00
Ricardo Wurmus
5785c45e01
gnu: r-a4core: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.42.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
85c2a802f9
gnu: r-annaffy: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.66.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
58c2b7978f
gnu: r-mlinterfaces: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.74.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
b4127b3490
gnu: r-clusterexperiment: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.14.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
2e9821cd11
gnu: r-clusterprofiler: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
498f45bcad
gnu: r-enrichplot: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.1.
[propagated-inputs]: Remove r-cowplot; add r-aplot and r-yulab-utils.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
9b6dee4c0d
gnu: r-dose: Update to 3.20.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
6dbc856518
gnu: r-fgsea: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.20.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
bca9a6b4c1
gnu: r-fcscan: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.8.0.
[propagated-inputs]: Add r-doparallel and r-foreach.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
7ac356d337
gnu: r-sigpathway: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.62.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
bc406e02bb
gnu: r-anota: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.42.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
46c97a358f
gnu: r-gosemsim: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.20.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
75f1085c2f
gnu: r-heatplus: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.2.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
a2b346ab13
gnu: r-varianttools: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.36.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
07e49dac6f
gnu: r-tradeseq: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.8.0.
[propagated-inputs]: Remove r-monocle; add r-mass and r-trajectoryutils.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
06c89769c6
gnu: r-ioniser: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.18.0.
2021-11-07 22:34:46 +00:00
Ricardo Wurmus
327371f61f
gnu: r-linnorm: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.18.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
f151723cb6
gnu: r-lumi: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.46.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
d9c9ec4396
gnu: r-methylumi: Update to 2.40.1.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.40.1.
[propagated-inputs]: Add r-genomicfeatures.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
74ea385c8a
gnu: r-minfi: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.40.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
56f8449df1
gnu: r-bumphunter: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.36.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
328050f083
gnu: r-siggenes: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.68.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
dc7a2b3b96
gnu: r-illuminaio: Update to 0.36.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.36.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
c14e90b2e0
gnu: r-geoquery: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.0.
[propagated-inputs]: Add r-data-table.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
cf5a3022c9
gnu: r-scone: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.18.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
d06be34abd
gnu: r-scdd: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.18.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
b5235660c8
gnu: r-noiseq: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.38.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
2b78b19ed8
gnu: r-monocle: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.22.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
aa5a9e5d63
gnu: r-mast: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.20.0.
2021-11-07 22:34:45 +00:00
Ricardo Wurmus
78018d3c5c
gnu: r-batchelor: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.10.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
2953aac54a
gnu: r-residualmatrix: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.4.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
25dc8fb984
gnu: r-icobra: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
3835d77db3
gnu: r-ihw: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
b5e67f5747
gnu: r-lpsymphony: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.22.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
2b0a656fd7
gnu: r-karyoploter: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
d9b6a42297
gnu: r-ebseq: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.34.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
e639d03112
gnu: r-dnacopy: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.68.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
efb1b28f32
gnu: r-copynumber: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.34.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
7c4992115c
gnu: r-chipexoqual: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.18.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
5c53d21450
gnu: r-savr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-savr): Update to 1.32.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
8c6a0221fb
gnu: r-biocsingular: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.10.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
fae42c164b
gnu: r-metapod: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.2.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
9a79db434a
gnu: r-ggtree: Update to 3.2.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
eb7a7bacbc
gnu: r-treeio: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.0.
2021-11-07 22:34:44 +00:00
Ricardo Wurmus
496260ddf1
gnu: r-scaledmatrix: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.2.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
651d54ef51
gnu: r-biocneighbors: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.12.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
7ec0b978de
gnu: r-ruvseq: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
6f2ef7761a
gnu: r-dnabarcodes: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
fff0fe2ec9
gnu: r-inspect: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
92f690c1b0
gnu: r-plgem: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.66.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
e5cd10e99d
gnu: r-rots: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.22.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
9050a5c7f6
gnu: r-glimma: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.4.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
6ad43d2d78
gnu: r-goseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.46.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
e9feedb902
gnu: r-ctc: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.68.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
6371513fd0
gnu: r-genomicinteractions: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
3dac6963f9
gnu: r-interactionset: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.22.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
56da30065a
gnu: r-riboseqr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.28.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
765052f5dc
gnu: r-riboprofiling: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
4f094515b0
gnu: r-chipcomp: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.24.0.
2021-11-07 22:34:43 +00:00
Ricardo Wurmus
f1cc328101
gnu: r-bayseq: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.28.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
29bfd56aa0
gnu: r-qdnaseq: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.30.0.
[propagated-inputs]: Remove r-future.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
19fb6bae8c
gnu: r-cghcall: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.56.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c5cb1e0118
gnu: r-cghbase: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.54.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c6cff9686b
gnu: r-marray: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.72.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
7bda0a9220
gnu: r-matrixgenerics: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.6.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
0d11010cef
gnu: r-chippeakanno: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
aad12099dd
gnu: r-graph: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.72.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
d6a3debb6d
gnu: r-multtest: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.50.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
8826132332
gnu: r-mbkmeans: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.10.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
6f6478b175
gnu: r-diffbind: Update to 3.4.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
d05485f7f7
gnu: r-greylistchip: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.26.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
88c203a85f
gnu: r-apeglm: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.16.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
c6c1f9fc72
gnu: r-qvalue: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.26.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
980a36cbee
gnu: r-oligo: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.58.0.
2021-11-07 22:34:42 +00:00
Ricardo Wurmus
0cffd15771
gnu: r-oligoclasses: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.56.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
319038ace3
gnu: r-geneplotter: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.72.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
c3a3c417c0
gnu: r-zlibbioc: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.40.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
469cf86fa2
gnu: r-xvector: Update to 0.34.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.34.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
0b341967e3
gnu: r-vsn: Update to 3.62.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.62.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
e174313541
gnu: r-variantannotation: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.40.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
47c3ec038e
gnu: r-tximport: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.22.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
bb69853f89
gnu: r-topgo: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.46.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
442a355026
gnu: r-systempiper: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.0.
[propagated-inputs]: Remove r-annotate, r-assertthat, r-batchtools, r-deseq2, r-dot,
r-edger, r-genomicfeatures, r-go-db, r-gostats, r-iranges, r-limma,
r-pheatmap, r-rjson, r-rsvg, r-testthat, and r-variantannotation; add
r-biocgenerics and r-htmlwidgets.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
c3d9b4b097
gnu: r-sva: Update to 3.42.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.42.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
679abce085
gnu: r-summarizedexperiment: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.24.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
2a3f2f002e
gnu: r-structuralvariantannotation: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.10.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
41e1bf39aa
gnu: r-slingshot: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
91c78f9527
gnu: r-trajectoryutils: Update to 1.2.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.2.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
9398e3e047
gnu: r-simplifyenrichment: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.4.0.
2021-11-07 22:34:41 +00:00
Ricardo Wurmus
bf90dbefcc
gnu: r-shortread: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.52.0.
2021-11-07 22:34:40 +00:00
Ricardo Wurmus
f1dedc13dc
gnu: r-seqpattern: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.26.0.
2021-11-07 22:34:40 +00:00