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51993 commits

Author SHA1 Message Date
Ricardo Wurmus
a620d22ea8
gnu: r-gprofiler: Move to (gnu packages cran). 
* gnu/packages/bioinformatics.scm (r-gprofiler): Move this variable from here...
* gnu/packages/cran.scm (r-gprofiler): ...to here.
 2020-06-13 01:19:38 +02:00
Ludovic Courtès
29e4d3ea06
gnu: guile-sqlite3: Update to 0.1.1. 
* gnu/packages/guile.scm (guile-sqlite3): Update to 0.1.1.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2020-06-12 18:56:11 +02:00
Katherine Cox-Buday
7def5056b6
gnu: Add liblogging. 
* gnu/packages/c.scm (liblogging): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-12 18:56:11 +02:00
Katherine Cox-Buday
0aee6e51b4
gnu: Add libfastjson. 
* gnu/packages/c.scm (libfastjson): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-12 18:56:10 +02:00
Katherine Cox-Buday
70a49ef76b
gnu: Add libestr. 
* gnu/packages/c.scm (libestr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-12 18:56:10 +02:00
Ryan Desfosses
3bec7a356a
gnu: Add emacs-shell-pop. 
* gnu/packages/emacs-xyz.scm (emacs-shell-pop): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-12 18:56:10 +02:00
Efraim Flashner
9a01efa262
gnu: Fix apache mirror URIs. 
* gnu/packages/web.scm (serf)[source]: Remove redundant part of URI.
* gnu/packages/java.scm (ant-bootstrap, java-commons-httpclient,
java-jakarta-oro)[source]: Same.
* gnu/packages/maven.scm (maven-shared-utils, maven-plugin-annotations,
maven-wagon-provider-api, maven-artifact)[source]: Same.
 2020-06-12 18:23:27 +03:00
Pierre Neidhardt
cd0f1fbd1a
gnu: xf86-input-libinput: Reduce closure size. 
* gnu/packages/xorg.scm (xf86-input-libinput)[inputs]: Replace libinput by
libinput-minimal.
 2020-06-12 09:00:45 +02:00
Ekaitz Zarraga
9c6ea3cb56
gnu: icecat: Fix WebGL support. 
* gnu/packages/gnuzilla.scm (icecat): Wrap mesa.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2020-06-12 01:29:54 +02:00
Jakub Kądziołka
648ae62112
gnu: Add exercism and dependencies. 
* gnu/packages/education.scm (exercism): New variable.
* gnu/packages/patches/exercism-disable-self-update.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/golang.scm (go-github-com-spf13-afero)
  (go-github-com-spf13-cast)
  (go-github-com-spf13-cobra)
  (go-github-com-spf13-jwalterweatherman)
  (go-github-com-spf13-viper)
  (go-github-com-fsnotify-fsnotify)
  (go-github-com-magiconair-properties)
  (go-github-com-pelletier-go-toml)
  (go-github-com-subosito-gotenv)
  (go-gopkg-in-ini-v1)
  (go-github-com-mitchellh-mapstructure): New variables.
 2020-06-11 22:44:27 +02:00
Mark H Weaver
437e64b7d3
gnu: linux-libre: Update to 5.4.46. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.46.
(linux-libre-5.4-pristine-source): Update hash.
 2020-06-11 16:19:38 -04:00
Mark H Weaver
48f3631b0f
gnu: linux-libre@5.7: Update to 5.7.2. 
* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.128.
(linux-libre-5.7-pristine-source): Update hash.
 2020-06-11 16:19:36 -04:00
Mark H Weaver
1c02643a06
gnu: linux-libre@5.6: Remove. 
Users of linux-libre-5.6 should migrate to version 5.7.

* gnu/packages/linux.scm (deblob-scripts-5.6, linux-libre-5.6-version)
(linux-libre-5.6-pristine-source, linux-libre-5.6-source)
(linux-libre-headers-5.6, linux-libre-arm-generic-5.6)
(linux-libre-arm64-generic-5.6): Remove variables.
 2020-06-11 16:19:34 -04:00
Mark H Weaver
e37aff92e2
gnu: linux-libre@4.19: Update to 4.19.128. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.128.
(linux-libre-4.19-pristine-source): Update hash.
 2020-06-11 16:19:32 -04:00
Mark H Weaver
e5630f5d3c
gnu: linux-libre@4.14: Update to 4.14.184. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.184.
(linux-libre-4.14-pristine-source): Update hash.
 2020-06-11 16:19:30 -04:00
Mark H Weaver
523d63638a
gnu: linux-libre@4.9: Update to 4.9.227. 
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.227.
(linux-libre-4.9-pristine-source): Update hash.
 2020-06-11 16:19:27 -04:00
Mark H Weaver
59feeb96e4
gnu: linux-libre@4.4: Update to 4.4.227. 
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.227.
(linux-libre-4.4-pristine-source): Update hash.
 2020-06-11 16:19:25 -04:00
Efraim Flashner
e73a016df2
gnu: adns: Update to 1.6.0. 
* gnu/packages/adns.scm (adns): Update to 1.6.0.
[source]: Use https.
[native-inputs]: Add m4.
 2020-06-11 23:13:40 +03:00
Efraim Flashner
4908ba058f
gnu: subversion: Update to 1.14.0. 
* gnu/packages/version-control.scm (subversion): Update to 1.14.0.
[source]: Update source URI.
 2020-06-11 22:41:02 +03:00
Ludovic Courtès
ecf92194a5
gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080]. 
* gnu/packages/web.scm (nghttp2-1.41): New variable.
(nghttp2)[replacement]: New field.
 2020-06-11 19:05:05 +02:00
Ricardo Wurmus
cbd9581acc
gnu: r-with-tests, r-minimal: Update to 4.0.1. 
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
67ee20fbd2
gnu: r-brms: Update to 2.13.0. 
* gnu/packages/cran.scm (r-brms): Update to 2.13.0.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
20702ad9a3
gnu: r-crochet: Update to 2.3.0. 
* gnu/packages/cran.scm (r-crochet): Update to 2.3.0.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
e5884ce4c7
gnu: r-openmx: Update to 2.17.4. 
* gnu/packages/cran.scm (r-openmx): Update to 2.17.4.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
b34ba0649a
gnu: r-stanheaders: Update to 2.21.0-5. 
* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5.
[propagated-inputs]: Add r-rcppeigen and r-rcppparallel.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
3a9a695255
gnu: r-semtools: Update to 0.5-3. 
* gnu/packages/cran.scm (r-semtools): Update to 0.5-3.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
bd76f9561d
gnu: r-sem: Update to 3.1-11. 
* gnu/packages/cran.scm (r-sem): Update to 3.1-11.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
db4d3b2581
gnu: r-emplik: Update to 1.1-1. 
* gnu/packages/cran.scm (r-emplik): Update to 1.1-1.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
de26ce7265
gnu: r-rsvg: Update to 2.1. 
* gnu/packages/cran.scm (r-rsvg): Update to 2.1.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
8ddf3be097
gnu: r-actuar: Update to 3.0-0. 
* gnu/packages/cran.scm (r-actuar): Update to 3.0-0.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
8050cce35d
gnu: r-gdina: Update to 2.8.0. 
* gnu/packages/cran.scm (r-gdina): Update to 2.8.0.
 2020-06-11 17:03:48 +02:00
Ricardo Wurmus
242fae8edf
gnu: r-seewave: Update to 2.1.6. 
* gnu/packages/cran.scm (r-seewave): Update to 2.1.6.
[inputs]: Add libsndfile.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
30031516d1
gnu: r-elasticnet: Update to 1.3. 
* gnu/packages/cran.scm (r-elasticnet): Update to 1.3.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
bb714ae79f
gnu: r-showtext: Update to 0.8-1. 
* gnu/packages/cran.scm (r-showtext): Update to 0.8-1.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
8957a336f7
gnu: r-showtextdb: Update to 3.0. 
* gnu/packages/cran.scm (r-showtextdb): Update to 3.0.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
b99ed8e6e5
gnu: r-abcrlda: Update to 1.0.3. 
* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
7262c1ff18
gnu: r-rgdal: Update to 1.5-10. 
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
dfd0b55f9e
gnu: r-parameters: Update to 0.8.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.8.0.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
53bf76c574
gnu: r-systemfonts: Update to 0.2.3. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
897ed4a76f
gnu: r-rhpcblasctl: Update to 0.20-137. 
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
4c4c34a154
gnu: r-ggraph: Update to 2.0.3. 
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
ed7fa0af07
gnu: r-europepmc: Update to 0.4. 
* gnu/packages/cran.scm (r-europepmc): Update to 0.4.
[propagated-inputs]: Add r-rlang, r-tibble, and r-tidyr.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
93043ba337
gnu: r-msigdbr: Update to 7.1.1. 
* gnu/packages/cran.scm (r-msigdbr): Update to 7.1.1.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:47 +02:00
Ricardo Wurmus
a50246f455
gnu: r-bookdown: Update to 0.19. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.19.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
5547b4360f
gnu: r-rms: Update to 6.0-0. 
* gnu/packages/cran.scm (r-rms): Update to 6.0-0.
[propagated-inputs]: Add r-cluster, r-digest, and r-mass.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
d263b2d67b
gnu: r-polspline: Update to 1.1.19. 
* gnu/packages/cran.scm (r-polspline): Update to 1.1.19.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
5130c454dd
gnu: r-lemon: Update to 0.4.5. 
* gnu/packages/cran.scm (r-lemon): Update to 0.4.5.
[native-inputs]: Add r-knitr.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
2de55fbab9
gnu: r-picante: Update to 1.8.2. 
* gnu/packages/cran.scm (r-picante): Update to 1.8.2.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
e27fc23b07
gnu: r-lavaan: Update to 0.6-6. 
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-6.
 2020-06-11 17:03:46 +02:00
Ricardo Wurmus
52d7306100
gnu: r-cmprsk: Update to 2.2-10. 
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-10.
 2020-06-11 17:03:46 +02:00