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Author SHA1 Message Date
Tobias Geerinckx-Rice
5d8e505ce5
guix-install.sh: Check for PGP key separately. 
* etc/guix-install.sh (chk_gpg_keyring): New function to handle the
public key check previously stuffed into chk_require.
(main): Call it.
 2019-07-08 18:16:10 +02:00
Christopher Baines
1d0bde2ee4
discovery: Handle edge case in scheme-files when looking at symlinks. 
Previously, this code would cause crashes in Guix (running guix package -s for
example) which could be experienced when Emacs creates temporary files in the
gnu/packages/patches directory when a patch file has been edited, but not
saved.

* guix/discovery.scm (scheme-files): Add else clause to cond used when
handling symlinks.
 2019-07-08 17:04:35 +01:00
Tobias Geerinckx-Rice
7a2e0c52df
guix-install.sh: Add missing ‘local’ declaration. 
* etc/guix-install.sh (chk_require): Make $c local.
 2019-07-08 17:47:39 +02:00
Tobias Geerinckx-Rice
6c77d79a49
guix-install.sh: Treat REQUIRE as the array it is. 
Don't flatten it into a string only to split it again later.

* etc/guix-install.sh (chk_require): Iterate over array elements, not
string tokens.
(main): Pass $REQUIRE as an array of arguments.
 2019-07-08 17:47:39 +02:00
Carl Dong
b6dc08393e
scripts: environment: Add --no-cwd. 
* doc/guix.texi (Invoking guix environment): Add --no-cwd.
* guix/scripts/environment.scm (show-help, %options): Add --no-cwd.
(launch-environment/container): Add 'map-cwd?' param; only add mapping
for cwd if #t.  Only change to cwd within container if #t, otherwise
home.
(guix-environment): Error if --no-cwd without --container.  Provide
'(not no-cwd?)' to launch-environment/container as 'map-cwd?'.
* tests/guix-environment.sh: Add test for no-cwd.

Co-authored-by: Mike Gerwitz <mtg@gnu.org>
 2019-07-08 10:33:20 -04:00
Carl Dong
a655d504aa
scripts: environment: Only rewrite user-specified mappings. 
* guix/scripts/environment.scm (launch-environment/container): Only
  apply override-user-mappings to user-mappings and cwd. Do not apply to
  network configuration mapping and inputs.
 2019-07-08 10:33:19 -04:00
Tobias Geerinckx-Rice
0971f8bd88
gnu: Remove r-biocinstaller. 
It requires R < 3.6 and is no longer supported.

* gnu/packages/bioinformatics.scm (r-biocinstaller): Define as
deprecated in favour of r-biocmanager.
 2019-07-08 16:13:11 +02:00
Tobias Geerinckx-Rice
1042e3481d
gnu: r-xbioc: Update to 0.1.16-1.6ff0670. 
This is needed to deprecate r-biocinstaller, which is no longer
distributed.

* gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670.
[propagated-inputs]: Replace deprecated r-biocinstaller with
r-biocmanager.
 2019-07-08 16:11:55 +02:00
Tobias Geerinckx-Rice
ddfb62807d
gnu: cmh: Fix build. 
This follows up on commit 1de48e8f8a.

* gnu/packages/algebra.scm (fplll-4-cmh): New variable.
(cmh)[inputs]: Use it.
 2019-07-08 15:48:07 +02:00
Tobias Geerinckx-Rice
69e3512b7c
gnu: libomp: Download over HTTPS. 
* gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
 2019-07-08 15:33:35 +02:00
Tobias Geerinckx-Rice
e2170c3192
gnu: libomp: Fix source hash. 
This is a follow-up to commit c5296e205b,
which updated llvm.

* gnu/packages/llvm.scm (libomp)[source]: Fix hash.
 2019-07-08 15:33:35 +02:00
Tobias Geerinckx-Rice
61242625ad
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.7.
 2019-07-08 15:33:35 +02:00
Joseph LaFreniere
377b0501c4
gnu: Add emacs-polymode-org. 
* gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Joseph LaFreniere
85630d8042
gnu: emacs-polymode: Update to 0.2. 
* gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2.
[source]: Change URL of Git repository to Polymode GitHub project.
[homepage]: Change URL to polymode GitHub project.
[description]: Realign text.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
ison
88a29b5cd3
gnu: i3blocks: Update to ec050e7. 
* gnu/packages/wm.scm (i3blocks): Update to ec050e7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Pierre Langlois
a55dd25d3e
gnu: dosfstools: Enable compat symlinks. 
Enable compatibility symlinks to provide commands such as `mkfs.vfat`.

* gnu/packages/disk.scm (dosfstools)[arguments]: Pass
"--enable-compat-symlinks" to configure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:56 +02:00
Pierre Langlois
b9a1d74de5
gnu: wireservice: New wireservice-package macro. 
Replace the parent 'base-package' variable with a 'wireservice-package' macro
that includes all common package fields.

* gnu/packages/wireservice.scm (base-package): Delete.
(wireservice-package): New macro.
(python-leather, python-agate, python-agate-sql, python-agate-dbf,
python-agate-excel): Use wireservice-package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-08 13:05:55 +02:00
Ludovic Courtès
cdf689471a
channels: Key cached channel derivations by system. 
Previously, the channel instance to derivation mapping would be
independent of the system.  Thus, building the same channel instance for
several different systems would always return the derivation that was
first computed.

This is a followup to c3ab921eed.

* guix/channels.scm (channel-instance-derivations)[instance->derivation]:
Pass the current system as a third argument to 'mcached'.
 2019-07-08 13:05:55 +02:00
Efraim Flashner
c7b757c46c
gnu: gama: Update to 2.06. 
* gnu/packages/gps.scm (gama): Update to 2.06.
 2019-07-08 10:38:23 +03:00
Vagrant Cascadian
d335ef51d7
gnu: diffoscope: Update to 116. 
* gnu/packages/package-management (diffoscope): Update to 116.
 2019-07-07 18:57:28 -07:00
Pierre Langlois
bf187d92e3
gnu: Add csvkit. 
* gnu/packages/wireservice.scm (csvkit): New variable.
* gnu/packages/patches/csvkit-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois
213b05f04e
gnu: Add python-agate-excel. 
* gnu/packages/wireservice.scm (python-agate-excel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois
f1122a2c91
gnu: Add python-agate-dbf. 
* gnu/packages/wireservice.scm (python-agate-dbf): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois
9b2850c845
gnu: Add python-agate-sql. 
* gnu/packages/wireservice.scm (python-agate-sql): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois
dc835e75ce
gnu: Add python-agate. 
* gnu/packages/wireservice.scm (python-agate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois
451742bcf6
gnu: Add python-leather. 
* gnu/packages/wireservice.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois
edeb04bfb7
gnu: Add python-dbfread. 
* gnu/packages/python-xyz.scm (python-dbfread): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois
450d5dc289
gnu: Add python-crate. 
* gnu/packages/databases.scm (python-crate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Pierre Langlois
0d5b7ea11f
gnu: Add python-pytimeparse. 
* gnu/packages/time.scm (python-pytimeparse): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Pierre Langlois
6543bc80b4
gnu: Add python-slugify. 
* gnu/packages/python-web.scm (python-slugify): New variable.
* gnu/packages/patches/python-slugify-depend-on-unidecode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung
e41ba8606f
gnu: Add emacs-moe-theme-el. 
* gnu/packages/emacs-xyz.scm (emacs-moe-theme-el): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung
ae429e48d1
gnu: emacs-goto-chg: Update to 1.7.3-1.1829a13. 
* gnu/packages/emacs-xyz.scm (emacs-goto-chg): Update to 1.7.3-1.1829a13.
[origin]: Use GIT-FETCH and GIT-REFERENCE.
[home-page]: Update.
[inputs]: Add emacs-undo-tree.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung
81d1baafdb
gnu: emacs-hydra: Update to 0.15.0. 
* gnu/packages/emacs-xyz.scm (emacs-hydra): Update to 0.15.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung
b453637f1b
gnu: Add emacs-lpy. 
* gnu/packages/emacs-xyz.scm (emacs-lpy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung
55a0b2a08d
gnu: emacs-md4rd: Update to 0.3.1. 
* gnu/packages/emacs-xyz.scm (emacs-md4rd): Update to 0.3.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:19 +02:00
Brian Leung
26150eac73
gnu: emacs-zoutline: Update to 0.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-zoutline): Update to 0.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung
9f6dca4de3
gnu: emacs-restclient: Update to 0-2.422ee8d. 
* gnu/packages/emacs-xyz.scm (emacs-restclient): Update to 0-2.422ee8d.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung
fa71034115
gnu: emacs-disk-usage: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-disk-usage)[source]: Use GIT-FETCH and GIT-FILE-NAME.
[home-page] Move to usual location.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung
8330715878
gnu: emacs-fish-completion: Don't use unstable tarball. 
* gnu/packages/emacs-xyz.scm (emacs-fish-completion)[source]: Use GIT-FETCH
  and GIT-FILE-NAME.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung
846d83482f
gnu: emacs-company-restclient: Update to 0.3.0. 
* gnu/packages/emacs-xyz.scm (emacs-company-restclient): Update to 0.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung
1fd2886ca7
gnu: emacs-skewer-mode: Update to 1.8.0. 
* gnu/packages/emacs-xyz.scm (emacs-skewer-mode): Update to 1.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung
9ee3be1bd5
gnu: emacs-simple-httpd: Update to 1.5.1. 
* gnu/packages/emacs-xyz.scm (emacs-simple-httpd): Update to 1.5.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:18 +02:00
Brian Leung
1c9ea5aaa4
gnu: emacs-git-timemachine: Update to 4.10. 
* gnu/packages/emacs-xyz.scm (emacs-git-timemachine): Update to 4.10.
[propagated-inputs] Add emacs-transient.
[source] Use GIT-FETCH and GIT-REFERENCE.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:17 +02:00
Ludovic Courtès
866822b738
build: Remove outdated 'release.nix'. 
This file had been unmaintained and probably broken since ~2013.

* release.nix: Remove.
* Makefile.am (EXTRA_DIST): Adjust accordingly.
 2019-07-07 15:48:17 +02:00
Ludovic Courtès
ccadafdcef
build: Add 'doc/build.scm' to build on-line copies of the manual. 
* doc/build.scm: New file.
* Makefile.am (EXTRA_DIST): Add it.
 2019-07-07 15:48:17 +02:00
Rutger Helling
aad6596294
gnu: wine-staging: Update to 4.12.1. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.12.1.
* gnu/packages/wine.scm (wine-staging): Update to 4.12.1.
 2019-07-07 13:51:06 +02:00
Christopher Baines
d029afdd2d
gnu: Update lollypop to 1.1.3.1. 
* gnu/packages/gnome.scm (lollypop): Update to 1.1.3.1.
[inputs]: Add python-pil.
 2019-07-07 12:24:19 +01:00
Mark H Weaver
079c93e1c1
self: Ship the (gnu machine …) modules. 
This is a followup to commit fa9edf09e9.

* guix/self.scm (compiled-guix)[*system-modules*]: Explicitly add all of
gnu/machine/*.
 2019-07-06 20:08:35 -04:00
Marius Bakke
36175a3a9e
Merge branch 'master' into staging 2019-07-07 01:18:18 +02:00
Marius Bakke
c72647fbae
gnu: xpad: Build against gtksourceview@3. 
* gnu/packages/gnome.scm (xpad)[inputs]: Change GTKSOURCEVIEW to GTKSOURCEVIEW-3.
 2019-07-06 20:43:00 +02:00