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794 commits

Author SHA1 Message Date
Tobias Geerinckx-Rice
f50ef3493e
gnu: unqlite: Use HTTPS home page. 
* gnu/packages/databases.scm (unqlite)[home-page]: Use HTTPS.
 2020-03-13 05:36:09 +01:00
Marius Bakke
41c6e4f2b4
Merge branch 'master' into staging 2020-03-11 22:58:11 +01:00
Tobias Geerinckx-Rice
0087a2506f
gnu: rocksdb: Use HTTPS home page. 
* gnu/packages/databases.scm (rocksdb)[home-page]: Use HTTPS.
 2020-03-11 03:01:45 +01:00
Marius Bakke
50b99c90c8
Merge branch 'master' into core-updates 2020-03-10 20:50:02 +01:00
Marius Bakke
b3b5714fa7
Merge branch 'master' into staging 2020-03-09 21:45:32 +01:00
Pierre Neidhardt
6d26ee3b67
gnu: Add soci. 
* gnu/packages/databases.scm (soci): New variable.
 2020-03-06 10:20:55 +01:00
Marius Bakke
b6f946f039
Merge branch 'master' into staging 2020-03-06 00:17:50 +01:00
Marius Bakke
ebb7cf9e21
Merge branch 'master' into core-updates 2020-03-04 23:16:17 +01:00
Tobias Geerinckx-Rice
dbc8a6e750
gnu: python-pyodbc: Update to 4.0.30. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.30.
 2020-03-04 20:59:53 +01:00
Marius Bakke
e32aea5472
Merge branch 'master' into staging 2020-03-04 12:04:42 +01:00
Tobias Geerinckx-Rice
1084e86b59
gnu: python2-py2neo: Use HTTPS home page. 
* gnu/packages/databases.scm (python2-py2neo)[home-page]: Use HTTPS.
 2020-03-03 05:06:48 +01:00
Marius Bakke
fb98351621
Merge branch 'master' into staging 2020-03-02 23:49:10 +01:00
Tobias Geerinckx-Rice
4e5ad79e4d
gnu: python-rq: Use HTTPS home page. 
* gnu/packages/databases.scm (python-rq)[home-page]: Use HTTPS.
 2020-03-02 21:46:27 +01:00
Marius Bakke
3941af527d
Merge branch 'master' into staging 2020-02-24 19:37:03 +01:00
nixo
659bc4362d
gnu: Add lmdbxx. 
* gnu/packages/databases.scm (lmdbxx): New variable.
 2020-02-23 00:44:55 +01:00
Thomas Danckaert
7dc0f1d5a8
gnu: qdbm: Fix segfault during tests. 
gnu/packages/databses.scm (qdbm): Add "CFLAGS=-fPIC" to make-flags.
 2020-02-22 17:38:29 +01:00
Marius Bakke
7edafc884c
Merge branch 'master' into core-updates 2020-02-14 19:05:45 +01:00
Marius Bakke
b280b9c3f2
gnu: postgresql@10: Update to 10.12. 
* gnu/packages/databases.scm (postgresql): Update to 10.12.
 2020-02-14 18:34:02 +01:00
Marius Bakke
e313327ee8
gnu: MariaDB: Update to 10.1.44. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.44.
[arguments]: Add substitution for hard coded file name.  Disable test that
depends on the existence of 'root@hostname' user.
 2020-02-14 18:33:59 +01:00
Marius Bakke
710a729605
gnu: rocksdb: Update to 6.6.4. 
* gnu/packages/databases.scm (rocksdb): Update to 6.6.4.
 2020-02-10 20:18:04 +01:00
Marius Bakke
12d8adbfc0
Merge branch 'staging' into core-updates 2020-01-23 23:11:11 +01:00
Marius Bakke
db0e9fe42c
Merge branch 'master' into staging 2020-01-23 22:57:16 +01:00
Tobias Geerinckx-Rice
737a3c12cd
gnu: libmemcached: Fix build. 
* gnu/packages/databases.scm (libmemcached)[source]: Add patch.
* gnu/packages/patches/libmemcached-build-with-gcc7.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2020-01-23 00:06:52 +01:00
Tobias Geerinckx-Rice
973218a374
gnu: memcached: Update to 1.5.20. 
* gnu/packages/databases.scm (memcached): Update to 1.5.20.
 2020-01-23 00:06:52 +01:00
Marius Bakke
8ed9be3fac
Merge branch 'staging' into core-updates 2020-01-21 22:39:42 +01:00
Marius Bakke
715110a8a2
Merge branch 'master' into staging 2020-01-21 21:34:41 +01:00
Marius Bakke
ca69163cc5
gnu: MariaDB: Remove workaround package. 
* gnu/packages/databases.scm (mariadb)[arguments]: Add substitution for the
'mysql_install_db' script.
(mariadb/fixed-install-db): Remove variable.
(libdbi-drivers)[native-inputs]: Change from MARIADB/FIXED-INSTALL-DB to MARIADB.
 2020-01-19 10:36:55 +01:00
Pierre Neidhardt
2072bc0838
gnu: Add mariadb-connector-c. 
* gnu/packages/databases.scm (mariadb-connector-c): New variable.
 2020-01-18 18:40:08 +01:00
Tobias Geerinckx-Rice
a8fa39cd08
gnu: lmdb: Update to 0.9.24. 
* gnu/packages/databases.scm (lmdb): Update to 0.9.24.
 2020-01-16 17:32:35 +01:00
Ludovic Courtès
0030277f79
gnu: Remove unnecessary uses of (guix build utils). 
* gnu/packages/crypto.scm: Remove use of (guix build utils).
* gnu/packages/databases.scm: Likewise.
 2020-01-15 18:40:43 +01:00
Marius Bakke
bb93042c8b
gnu: util-linux: Move libraries to separate output. 
Fixes <https://bugs.gnu.org/37732>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.

* gnu/packages/linux.scm (util-linux)[outputs]: Add "lib".
[arguments]: Update #:configure-flags and the "move-static-libraries" phase
accordingly.  Add phases "patch-build-scripts" and "adjust-pkg-config-files".
(e2fsprogs, psm, mtd-utils, f2fs-tools, f2fs-tools-1.7, eudev,
xfsprogs)[inputs]: Change to the "lib" output of UTIL-LINUX.
(btrfs-progs)[inputs]: Remove duplicate UTIL-LINUX inputs and change to use
the "lib" output.
* gnu/packages/admin.scm (pam-mount)[inputs]: Add UTIL-LINUX:LIB.
(testdisk)[inputs]: Change to the "lib" output of UTIL-LINUX.
* gnu/packages/android.scm (abootimg)[inputs]: Likewise.
* gnu/packages/audio.scm (jack-1)[propagated-inputs]: Likewise.
* gnu/packages/bootloaders.scm (syslinux, vboot-utils)[inputs]: Likewise.
* gnu/packages/chez.scm (chez-scheme)[inputs]: Likewise.
* gnu/packages/cryptsetup.scm (cryptsetup, cryptsetup-static)[inputs]: Likewise.
* gnu/packages/databases.scm (postgresql, 4store)[inputs]: Likewise.
* gnu/packages/disk.scm (ndctl, gptfdisk, fdisk, gparted, rmlint,
volume-key)[inputs]: Likewise.
(parted)[inputs]: Likewise.
[native-inputs]: Add UTIL-LINUX.
* gnu/packages/efi.scm (sbsigntools)[inputs]: Add UTIL-LINUX:LIB.
* gnu/packages/engineering.scm (lib3mf)[inputs]: Change to the "lib" output of
UTIL-LINUX.
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Likewise.
* gnu/packages/file-systems.scm (glusterfs, jfsutils, zfs)[inputs]: Likewise.
* gnu/packages/firmware.scm (ovmf)[inputs]: Likewise.
* gnu/packages/fontutils.scm (fontconfig)[propagated-inputs]: Likewise.
* gnu/packages/freedesktop.scm (localed)[inputs]: Likewise.
* gnu/packages/glib.scm (glib, appstream-glib)[propagated-inputs]: Likewise.
* gnu/packages/gnome.scm (tracker, gnome-terminal)[inputs]: Likewise.
* gnu/packages/jupyter.scm (xeus)[inputs]: Likewise.
* gnu/packages/kde.scm (kpmcore)[inputs]: Likewise.
* gnu/packages/kodi.scm (crossguid)[inputs]: Likewise.
* gnu/packages/lighting.scm (ola)[inputs]: Likewise.
* gnu/packages/music.scm (libgig)[inputs]: Likewise.
* gnu/packages/nfs.scm (nfs-utils)[inputs]: Likewise.
* gnu/packages/opencog.scm (opencog)[inputs]: Likewise.
* gnu/packages/package-management.scm (msitools)[inputs]: Change to the "lib"
output of UTIL-LINUX.
* gnu/packages/password-utils.scm (pwsafe)[inputs]: Likewise.
* gnu/packages/telephony.scm (pjproject)[propagated-inputs]: Likewise.
* gnu/packages/rdf.scm (rasqal)[inputs]: Likewise.
* gnu/packages/search.scm (xapian)[inputs]: Likewise.
* gnu/packages/sssd.scm (sssd)[native-inputs]: Likewise.
* gnu/packages/storage.scm (ceph)[inputs]: Add UTIL-LINUX:LIB.
* gnu/packages/task-management.scm (taskwarrior)[inputs]: Change to the "lib"
output of UTIL-LINUX.
* gnu/packages/virtualization.scm (libvirt, xen)[inputs]: Likewise.
* gnu/packages/xorg.scm (libsm)[inputs]: Likewise.
 2020-01-15 00:24:28 +01:00
Jethro Cao
84032506fc
gnu: redis: Update to 5.0.7. 
* gnu/packages/databases.scm (redis): Update to 5.0.7.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2020-01-12 22:23:28 +01:00
Riku Viitanen
9d19266583
gnu: postgresql@11: Update to 11.6. 
* gnu/packages/databases: (postgresql-11): Update to 11.6.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2020-01-12 22:23:28 +01:00
Riku Viitanen
901c993000
gnu: postgresql@9.6: Update to 9.6.16. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.16.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2020-01-12 22:23:28 +01:00
Marius Bakke
2316f027f8
gnu: rocksdb: Update to 6.5.2. 
* gnu/packages/databases.scm (rocksdb): Update to 6.5.2.
 2020-01-07 18:18:11 +01:00
Marius Bakke
982eff9e84
Merge branch 'master' into staging 2020-01-03 19:41:05 +01:00
Efraim Flashner
877aa9c398
gnu: python-apsw: Update to 3.28.0-r1. 
* gnu/packages/databases.scm (python-apsw): Update to 3.28.0-r1.
 2020-01-03 16:23:18 +02:00
Efraim Flashner
53a9970e3b
gnu: python-apsw: Use 'replace' for 'check phase. 
* gnu/packages/databases.scm (python-apsw)[arguments]: Update build
phase order and replace stock 'check phase.
 2020-01-03 16:23:18 +02:00
Efraim Flashner
9930beb860
gnu: python-apsw: Don't use unstable tarball. 
* gnu/packages/databases.scm (python-apsw)[source]: Download using
release zip archive.
[native-inputs]: Add unzip.
 2020-01-03 16:23:17 +02:00
Tobias Geerinckx-Rice
10f004f0c5
gnu: tdb: Update to 1.4.3. 
* gnu/packages/databases.scm (tdb): Update to 1.4.3.
 2019-12-24 04:01:07 +01:00
Marius Bakke
7ba6d70e45
Merge branch 'master' into staging 2019-12-18 23:07:40 +01:00
Marius Bakke
9077cf68ec
gnu: libdbi-drivers: Adapt to multiple-output MariaDB. 
* gnu/packages/databases.scm (mariadb/fixed-install-db): New public variable.
(libdbi-drivers)[inputs]: Add MARIADB:DEV and MARIADB:LIB.  Remove MARIADB.
[native-inputs]: Add MARIADB/FIXED-INSTALL-DB.
[arguments]: Adjust accordingly.
 2019-12-18 22:36:37 +01:00
Marius Bakke
939c5b2cb6
gnu: MariaDB: Do not propagate OpenSSL. 
* gnu/packages/databases.scm (mariadb)[propagated-inputs]: Remove.
[inputs]: Add OPENSSL-1.0.
[arguments]: Add absolute references to OpenSSL in "post-install" phase.
 2019-12-11 01:14:38 +01:00
Marius Bakke
cb669c0951
gnu: postgresql@10: Update to 10.11. 
* gnu/packages/databases.scm (postgresql): Update to 10.11.
 2019-12-11 01:14:37 +01:00
Marius Bakke
ab0cb26f1a
gnu: MariaDB: Update to 10.1.43. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.43.
[arguments]: Disable new test.
[inputs]: Add LINUX-PAM.
 2019-12-11 01:14:37 +01:00
Marius Bakke
33b59c1a3e
Merge branch 'staging' 2019-12-04 20:12:41 +01:00
Ricardo Wurmus
312ec128af
gnu: python-pandas: Move to (gnu packages python-science). 
* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from
here...
* gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here.
* gnu/packages/benchmark.scm, gnu/packages/databases.scm,
gnu/packages/graph.scm, gnu/packages/parallel.scm,
gnu/packages/serialization.scm: Import (gnu packages python-science).
 2019-12-04 08:56:36 +01:00
Marius Bakke
0897ad7fac
Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
Guillaume Le Vaillant
df81de8683
gnu: Add libdbi-drivers. 
* gnu/packages/databases.scm (libdbi-drivers): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-26 00:16:54 +01:00
Guillaume Le Vaillant
ae8a0184bf
gnu: Add libdbi. 
* gnu/packages/databases.scm (libdbi): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-11-26 00:16:54 +01:00
Marius Bakke
f056553c6b
Merge branch 'master' into staging 2019-11-15 20:11:35 +01:00
Roel Janssen
95c633e0d8
databases: Fix build of virtuoso-ose. 
Virtuoso cannot be built with versions of OpenSSL >1.1.0.

* gnu/packages/databases.scm (virtuoso-ose)[inputs]: Change OPENSSL to OPENSSL-1.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-11-03 19:33:47 +01:00
Tobias Geerinckx-Rice
fd423e4df7
gnu: leveldb: Update home page. 
* gnu/packages/databases.scm (leveldb)[home-page]: Update.
 2019-11-01 22:51:22 +01:00
Marius Bakke
998e6cdcd2
Merge branch 'master' into staging 2019-10-30 14:32:53 +01:00
Leo Famulari
561d391ba8
gnu: Go standard library 'x' packages: Consolidate. 
* gnu/packages/golang.scm (go-golang-org-x-text, go-golang-org-x-sys, go-golang-org-x-net,
go-golang-org-x-time): New variables.
(go-golang.org-x-crypto-ssh-terminal, go-golang-org-x-crypto-bcrypt,
go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2,
go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20,
go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish,
go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519,
go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s,
go-golang-org-x-crypto-sha3, go-golang-org-x-text-encoding,
go-golang-org-x-text-transform, go-golang-org-x-text-unicode-norm,
go-golang-org-x-net-ipv4, go-golang-org-x-net-bpf, go-golang-org-x-net-context,
go-golang-org-x-net-internal-socks, go-golang-org-x-net-internal-socket,
go-golang-org-x-net-internal-iana, go-golang-org-x-net-ipv6,
go-golang-org-x-net-proxy, go-golang-org-x-sys-cpu, go-golang-org-x-sys-unix,
go-golang-org-x-time-rate): Remove variables.
(go-github-com-sirupsen-logrus, go-github-com-docker-distribution,
go-github-com-libp2p-go-libp2p-crypto,
go-github-com-multiformats-go-multihash,
go-github-com-libp2p-go-libp2p-peer,
go-github-com-libp2p-go-libp2p-metrics,
go-github-com-multiformats-go-multiaddr,
go-github-com-multiformats-go-multiaddr-net,
go-github-com-mattn-go-isatty, go-github-com-gdamore-encoding,
go-github-com-gdamore-tcell): Adjust accordingly.
* gnu/packages/docker.scm (docker-libnetwork-cmd-proxy): Likewise.
* gnu/packages/databases.scm (mongo-tools): Likewise.
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-api, gx, gx-go): Likewise.
* gnu/packages/web.scm (poussetaches): Likewise.
* gnu/packages/terminals.scm (go-github-com-junegunn-fzf,
go-github.com-howeyc-gopass): Likewise.
(go-golang.org-x-crypto-ssh-terminal): Remove variable.
* gnu/packages/syncthing.scm (syncthing,
go-github-com-oschwald-geoip2-golang,
go-github-com-oschwald-maxminddb-golang,
go-github-com-syncthing-notify): Adjust accordingly.
* gnu/packages/linux.scm (go-netlink): Likewise.
 2019-10-29 11:03:12 -04:00
Marius Bakke
4c1918db34
Merge branch 'master' into staging 2019-10-23 20:48:55 +02:00
Christopher Baines
9d67480adf
gnu: mongodb: Fix build. 
* gnu/packages/databases.scm (mongodb)[inputs]: Use openssl 1, as 1.1. doesn't
work.
[arguments]: Change how a constant is defined in the tests to allow compiling
with a newer version of GCC.
 2019-10-22 07:27:14 +01:00
Christopher Baines
6fc03fccd4
gnu: Add ephemeralpg. 
This is a general utility, but I'm particularly interested in using this to
enable build time tests for the guix-data-service package.

* gnu/packages/databases.scm (ephemeralpg): New variable.
 2019-10-21 18:28:07 +01:00
Marius Bakke
b95d1b3289
Merge branch 'master' into staging 2019-10-18 18:10:47 +02:00
Tobias Geerinckx-Rice
79bc917685
gnu: python-pylibmc: Update to 1.6.1. 
* gnu/packages/databases.scm (python-pylibmc): Update to 1.6.1.
 2019-10-16 05:40:59 +02:00
Tobias Geerinckx-Rice
19181820bc
gnu: python-crate: Update to 0.23.2. 
* gnu/packages/databases.scm (python-crate): Update to 0.23.2.
 2019-10-15 05:24:36 +02:00
Tobias Geerinckx-Rice
8e45ec509e
gnu: sqitch: Remove perl-file-homedir input. 
* gnu/packages/databases.scm (perl-file-homedir)[inputs]: Remove perl-file-homedir.
 2019-10-14 19:33:18 +02:00
Tobias Geerinckx-Rice
f64cd5d1ac
gnu: sqitch: Update to 1.0.0. 
* gnu/packages/databases.scm (sqitch): Update to 1.0.0.
 2019-10-14 17:14:45 +02:00
Julien Lepiller
2b8491fbbe
gnu: mariadb: Split into out, lib and dev. 
* gnu/packages/databases.scm (mariadb): Split into out, lib and dev.
(perl-dbd-mysql, python-mysqlclient): Adjust dependencies.
* gnu/packages/bioinformatics.scm (kentutils): Adjust dependencies.
* gnu/packages/cran.scm (r-rmysql): Adjust dependencies.
* gnu/packages/emacs-xyz.scm (emacs-emacsql): Adjust dependencies.
* gnu/packages/kodi.scm (kodi): Adjust dependencies.
* gnu/packages/qt.scm (qt, qtbase): Adjust dependencies.
* gnu/packages/ruby.scm (ruby-mysql2): Adjust dependencies.
 2019-10-12 13:07:41 +02:00
Marius Bakke
2fa55c7247
gnu: mariadb: Build with GCC 5 on ARMv7. 
Fixes <https://bugs.gnu.org/37605>.

* gnu/packages/databases.scm (mariadb)[native-inputs]: Add GCC-5 when the
current system is ARMv7.
 2019-10-08 10:16:04 +02:00
Efraim Flashner
aace6f6dba
gnu: mysql: Update to 5.7.27. 
* gnu/packages/databases.scm (mysql): Update to 5.7.27.
[native-inputs]: Add pkg-config.
[inputs]: Add libtirpc, rpcsvc-proto.
 2019-10-03 19:28:56 +03:00
Mark H Weaver
65542a8852
Merge branch 'master' into core-updates 2019-09-06 20:46:00 -04:00
Marius Bakke
c0de48c9a5
gnu: tdb: Update to 1.4.2. 
* gnu/packages/databases.scm (tdb): Update to 1.4.2.
 2019-09-05 00:21:42 +02:00
Mark H Weaver
0481289cbc
Merge branch 'master' into core-updates 2019-08-29 17:19:18 -04:00
Marius Bakke
6743080ccc
gnu: python-alembic: Update to 1.0.11. 
* gnu/packages/databases.scm (python-alembic): Update to 1.0.11.
 2019-08-29 14:44:21 +02:00
Tobias Geerinckx-Rice
d5be746a85
gnu: python-pyodbc: Update to 4.0.27. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.27.
 2019-08-24 04:56:08 +02:00
Mark H Weaver
893c2df00d
Merge branch 'master' into core-updates 2019-08-22 15:53:27 -04:00
Tobias Geerinckx-Rice
23503abbc0
gnu: python-redis: Update to 3.3.8. 
* gnu/packages/databases.scm (python-redis): Update to 3.3.8.
 2019-08-22 15:35:32 +02:00
Marius Bakke
462ad9f56b
Merge branch 'master' into core-updates 2019-08-13 20:42:06 +02:00
Marius Bakke
1b1b006afd
Merge branch 'staging' 2019-08-13 18:51:12 +02:00
Efraim Flashner
32c517a327
gnu: 4store: Remove unneeded build phase. 
* gnu/packages/databases.scm (4store)[arguments]: Remove unneeded
'generate-configure phase.
 2019-08-09 12:13:18 +03:00
Efraim Flashner
50e20b8fee
gnu: 4store: Don't use unstable tarball. 
* gnu/packages/databases.scm (4store)[source]: Download using
'git-fetch'.
 2019-08-09 12:12:08 +03:00
Marius Bakke
36f400f616
Merge branch 'master' into staging 2019-08-08 18:14:45 +02:00
Marius Bakke
14b80bf6ca
gnu: postgresql@9: Update to 9.6.15 [fixes CVE-2019-10208]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.15.
 2019-08-08 17:48:46 +02:00
Marius Bakke
cbfddc2f33
gnu: postgresql@11: Update to 11.5 [fixes CVE-2019-10208, CVE-2019-10209]. 
* gnu/packages/databases.scm (postgresql-11): Update to 11.5.
 2019-08-08 17:48:46 +02:00
Marius Bakke
c8f5827a56
gnu: postgresql: Udpate to 10.10 [fixes CVE-2019-10208]. 
* gnu/packages/databases.scm (postgresql): Update to 10.10.
 2019-08-08 17:32:18 +02:00
Marius Bakke
cc3c5fc5e1
gnu: mariadb: Update to 10.1.41 [security fixes]. 
This fixes CVE-2019-2805, CVE-2019-2740, CVE-2019-2739, and CVE-2019-2737.

* gnu/packages/databases.scm (mariadb): Update to 10.1.41.
[source](uri): Update download URL.
 2019-08-04 13:49:56 +02:00
Marius Bakke
f184893af0
gnu: MariaDB: Disable the TokuDB plugin. 
Fixes <https://bugs.gnu.org/35521>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/databases.scm (mariadb)[arguments]: Pass "-DTOKUDB_OK" in
<#:configure-flags>.  Enable the "innodb_fts.crash_recovery" test, which
likely failed because of the high I/O load induced by TokuDB.
[inputs]: Remove SNAPPY.

(cherry picked from commit bba7a77ed9)
 2019-08-04 13:49:55 +02:00
Marius Bakke
bba7a77ed9
gnu: MariaDB: Disable the TokuDB plugin. 
Fixes <https://bugs.gnu.org/35521>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/databases.scm (mariadb)[arguments]: Pass "-DTOKUDB_OK" in
<#:configure-flags>.  Enable the "innodb_fts.crash_recovery" test, which
likely failed because of the high I/O load induced by TokuDB.
[inputs]: Remove SNAPPY.
 2019-07-14 23:06:24 +02:00
Marius Bakke
fb9a23a3f3
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/python-xyz.scm
	gnu/packages/xml.scm
	guix/gexp.scm
	po/guix/POTFILES.in
 2019-07-12 01:03:53 +02:00
Marius Bakke
878a6baa4c
Merge branch 'staging' 2019-07-11 20:33:44 +02:00
Efraim Flashner
2d775ed2d6
gnu: postgresql@9: Update to 9.6.14 [fixes CVE-2018-1058, CVE-2019-9193] 
* gnu/packages/databases.scm (postgresql@9): Update to 9.6.14.
 2019-07-10 11:06:15 +03:00
Marius Bakke
7a05fdd0e1
Merge branch 'master' into staging 2019-07-10 00:55:42 +02:00
Pierre Langlois
450d5dc289
gnu: Add python-crate. 
* gnu/packages/databases.scm (python-crate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-07-07 15:48:20 +02:00
Marius Bakke
4fb9165515
Merge branch 'staging' into core-updates 2019-07-02 20:18:16 +02:00
Marius Bakke
e307f52e01
gnu: postgresql@10: Update to 10.9. 
* gnu/packages/databases.scm (postgresql): Update to 10.9.
 2019-07-02 17:14:34 +02:00
Ludovic Courtès
5cc1075a76
Merge branch 'master' into core-updates 2019-06-27 23:33:48 +02:00
Tobias Geerinckx-Rice
591464e365
gnu: memcached: Update to 1.5.16. 
* gnu/packages/databases.scm (memcached): Update to 1.5.16.
 2019-06-25 16:24:11 +02:00
Gábor Boskovits
91477def51
gnu: Add postgresql-11. 
* gnu/packages/databases.scm(postgresql-11): New variable.
 2019-06-24 10:41:16 +02:00
Tobias Geerinckx-Rice
6263202ba2
gnu: python-lmdb: Update to 0.95. 
* gnu/packages/databases.scm (python-lmdb): Update to 0.95.
 2019-06-22 01:02:14 +02:00
Marius Bakke
c69959f054
gnu: Replace uses of 'cmake' with 'cmake-minimal'. 
This follows up commit 2f33a7321e which
introduced a new CMAKE-MINIMAL variant for use in package inputs.

* gnu/packages/databases.scm (python-pyarrow)[native-inputs]: Replace CMAKE
with CMAKE-MINIMAL.
* gnu/packages/emacs-xyz.scm (emacs-scel)[native-inputs]: Likewise.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Likewise.
* gnu/packages/games.scm (0ad, the-butterfly-effect)[native-inputs]: Likewise.
* gnu/packages/gnome.scm (deja-dup)[native-inputs]: Likewise.
* gnu/packages/ibus.scm (ibus-rime)[native-inputs]: Likewise.
* gnu/packages/rust.scm (rust-1.19)[native-inputs]: Likewise.
* gnu/packages/simulation.scm (fenics)[native-inputs]: Likewise.
* gnu/packages/squirrel.scm (squirrel)[native-inputs]: Likewise.
* gnu/packages/video.scm (handbrake)[native-inputs]: Likewise.
* gnu/packages/virtualization.scm (xen)[native-inputs]: Likewise.
* gnu/packages/vulkan.scm (shaderc)[native-inputs]: Likewise.
 2019-06-20 23:56:57 +02:00
Marius Bakke
6cb1ef9ea2
Merge branch 'staging' into core-updates 2019-06-20 23:38:56 +02:00
Alex Griffin
a3abc3fdfc
gnu: perl-db-file: Update to 1.852. 
* gnu/packages/databases.scm (perl-db-file): Update to 1.852.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-13 23:06:44 +02:00
Ludovic Courtès
d9bbfe042e
Merge branch 'master' into core-updates 2019-06-13 13:24:35 +02:00
Marius Bakke
58bf51b4c0
Merge branch 'master' into staging 2019-06-11 10:27:09 +02:00
Jack Hill
535a69e9e5
gnu: recutils: Remove emacs-minimal native input. 
* gnu/packages/databases.scm (recutils)[native-inputs]: Remove emacs-minimal.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-10 07:04:48 +03:00
Jack Hill
9df786752e
gnu: Add emacs-recutils. 
* gnu/packages/databases.scm (emacs-recutils): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-10 07:04:45 +03:00
Marius Bakke
30e12b9664
Merge branch 'master' into staging 2019-06-03 17:03:56 +02:00
Danny Milosavljevic
8d1647b228
gnu: python-alembic: Update to 1.0.10. 
* gnu/packages/databases.scm (python-alembic): Update to 1.0.10.
 2019-05-27 18:16:25 +02:00
Marius Bakke
57df83e07d
Merge branch 'staging' into core-updates 2019-05-25 00:25:15 +02:00
Marius Bakke
224d2e2efd
gnu: postgresql: Remove graft for 10.8. 
* gnu/packages/databases.scm (postgresql): Update to 10.8.
[replacement]: Remove.
(postgresql-10.8): Remove variable.
 2019-05-24 22:48:59 +02:00
Marius Bakke
ddb4062784
Merge branch 'master' into staging 2019-05-24 22:44:51 +02:00
Marius Bakke
9d0c291e3e
gnu: Move Sphinx and friends to (gnu packages sphinx). 
* gnu/packages/python-xyz.scm (python-sphinxcontrib-websupport,
python2-sphinxcontrib-websupport, python-sphinx, python2-sphinx,
python-sphinx-gallery, python2-sphinx-gallery, python-sphinx-rtd-theme,
python2-sphinx-rtd-theme, python-guzzle-sphinx-theme,
python2-guzzle-sphinx-theme, python-sphinxcontrib-newsfeed,
python-sphinxcontrib-programoutput, python2-sphinxcontrib-programoutput,
python-sphinx-repoze-interface, python2-sphinx-repoze-interface,
python-sphinx-cloud-sptheme, python2-sphinx-cloud-sptheme,
python-sphinx-alabaster-theme, python2-sphinx-alabaster-theme,
python-sphinx-me, python-sphinxcontrib-svg2pdfconverter): Move to ...
(gnu):
* gnu/packages/sphinx.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/packages/admin.scm, gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm, gnu/packages/cluster.scm,
gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/disk.scm,
gnu/packages/django.scm, gnu/packages/elf.scm, gnu/packages/emacs-xyz.scm,
gnu/packages/emulators.scm, gnu/packages/finance.scm, gnu/packages/image.scm,
gnu/packages/libffi.scm, gnu/packages/mail.scm, gnu/packages/mpd.scm,
gnu/packages/openstack.scm, gnu/packages/pdf.scm, gnu/packages/python-web.scm,
gnu/packages/search.scm, gnu/packages/statistics.scm,
gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm,
gnu/packages/tls.scm, gnu/packages/web.scm: Adjust module imports.
 2019-05-24 21:54:31 +02:00
Marius Bakke
a52c807a39
gnu: postgresql: Replace with 10.8 [security fixes]. 
This fixes CVE-2019-10129 and CVE-2019-10130.

* gnu/packages/databases.scm (postgresql)[replacement]: New field.
(postgresql-10.8): New variable.
 2019-05-24 21:54:30 +02:00
Vagrant Cascadian
d087a3a6c1
gnu: python-trollius-redis: Fix typo "asynchronous". 
* gnu/packages/databases (python-trollius-redis)[description]: Fix typo.
 2019-05-22 18:09:47 -07:00
Tobias Geerinckx-Rice
7a890145e3
gnu: memcached: Update to 1.5.14. 
* gnu/packages/databases.scm (memcached): Update to 1.5.14.
 2019-05-21 00:51:44 +02:00
Marius Bakke
f94051e61f
gnu: python-mysqlclient: Don't depend on MySQL. 
* gnu/packages/databases.scm (python-mysqlclient)[native-inputs]: Move MARIADB
from here to ...
[inputs]: ... here.  Remove MYSQL.
 2019-05-13 00:17:37 +02:00
Marius Bakke
9c6fb330ad
gnu: perl-dbd-mysql: Depend on MariaDB rather than MySQL. 
* gnu/packages/databases.scm (perl-dbd-mysql)[propagated-inputs]: Change from
MYSQL to MARIADB.
 2019-05-13 00:17:37 +02:00
Marius Bakke
0447a2a82b
gnu: postgresql@9: Update to 9.6.13 [fixes CVE-2019-10129, CVE-2019-10130]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.13.
 2019-05-13 00:17:37 +02:00
Marius Bakke
3a32be71eb
gnu: leveldb: Update to 1.22. 
* gnu/packages/databases.scm (leveldb): Update to 1.22.
 2019-05-09 13:43:03 +02:00
Maxim Cournoyer
063edf928a
gnu: Add python-pylibmc. 
* gnu/packages/databases.scm (python-pylibmc, python2-pylibmc): New variables.
 2019-05-09 00:22:38 -04:00
Maxim Cournoyer
da6026792b
gnu: Add libmemcached. 
* gnu/packages/databases.scm (libmemcached): New variable.
 2019-05-09 00:22:37 -04:00
Marius Bakke
6346dca4bb
gnu: mariadb: Update to 10.1.40. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.40.
 2019-05-08 23:32:54 +02:00
Marius Bakke
3b458d5462
Merge branch 'master' into core-updates 2019-05-01 23:11:41 +02:00
Marius Bakke
37da4fbe15
Merge branch 'master' into staging 2019-04-23 19:43:59 +02:00
Tobias Geerinckx-Rice
a263a97687
gnu: python-redis: Update to 3.2.1. 
* gnu/packages/databases.scm (python-redis): Update to 3.2.1.
 2019-04-22 15:20:34 +02:00
Tobias Geerinckx-Rice
1f2f358b69
gnu: python-sqlalchemy: Update to 1.3.3. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.3.
 2019-04-22 14:55:58 +02:00
Tobias Geerinckx-Rice
ba18ea5f41
gnu: python-pyodbc: Update to 4.0.26. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.26.
 2019-04-22 14:25:14 +02:00
Tobias Geerinckx-Rice
fe74e6ac6b
gnu: memcached: Update to 1.5.13. 
* gnu/packages/databases.scm (memcached): Update to 1.5.13.
 2019-04-22 14:17:00 +02:00
Marius Bakke
f5961dd585
Merge branch 'master' into staging 2019-04-17 00:08:34 +02:00
Christopher Baines
cabe8f1844
gnu: Add sqitch. 
* gnu/packages/databases.scm (sqitch): New variable.
 2019-04-14 10:45:59 +01:00
Christopher Baines
55916fa226
gnu: Add perl-mysql-config. 
* gnu/packages/databases.scm (perl-mysql-config): New variable.
 2019-04-14 10:45:59 +01:00
Marius Bakke
571fb008a5
Merge branch 'master' into staging 2019-04-01 00:02:39 +02:00
Marius Bakke
5cc013f05d
gnu: leveldb: Update to 1.21. 
* gnu/packages/databases.scm (leveldb): Update to 1.21.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
 2019-03-31 21:26:15 +02:00
Marius Bakke
ad7c77fd75
gnu: leveldb: Don't use unstable tarball. 
* gnu/packages/databases.scm (leveldb)[source]: Use GIT-FETCH.
 2019-03-31 21:26:15 +02:00
Efraim Flashner
36a4366d79
gnu: Fix descriptions to not use quotes. 
* gnu/packages/admin.scm (wpa-supplicant-minimal, mingetty, di),
* gnu/packages/audio.scm (fil-plugins),
* gnu/packages/base.scm (make-ld-wrapper, make-glibc-locales),
* gnu/packages/bioinformatics.scm (r-samtools),
* gnu/packages/chez.scm (chez-mit),
* gnu/packages/commencement.scm (make-gcc-toolchain),
* gnu/packages/compression.scm (fastjar),
* gnu/packages/cran.scm (r-maps, r-rcpp),
* gnu/packages/databases.scm (sparql-query),
* gnu/packages/dunst.scm (dunst),
* gnu/packages/ftp.scm (ncftp),
* gnu/packages/gl.scm (freeglut),
* gnu/packages/haskell-check.scm (ghc-tasty-golden),
* gnu/packages/haskell.scm (ghc-case-insensitive, ghc-text,
ghc-haskell-src, ghc-syb, ghc-deepseq-generics, ghc-network-uri,
ghc-rerebase, ghc-zlib),
* gnu/packages/image.scm (jbig2dec),
* gnu/packages/kde-frameworks.scm (kinit, karchive),
* gnu/packages/linux.scm (wireless-tools, perf, module-init-tools, kbd),
* gnu/packages/lirc.scm (lirc),
* gnu/packages/lisp.scm (uglify-js),
* gnu/packages/mate.scm (mate-netbook),
* gnu/packages/microcom.scm (microcom),
* gnu/packages/music.scm (bristol),
* gnu/packages/networking.scm (perl-geo-ip),
* gnu/packages/patchutils.scm (patches),
* gnu/packages/perl-check.scm (perl-test-more-utf8),
* gnu/packages/perl.scm (perl-log-report-optional, perl-file-which,
perl-io-tty, perl-log-any, perl-digest-sha1, perl-class-load,
perl-regexp-common, perl-module-pluggable, perl-class-modifier),
* gnu/packages/python-xyz.scm (python-backports-abc, python-natsort),
* gnu/packages/samba.scm (iniparser),
* gnu/packages/search.scm (mlocate),
* gnu/packages/spice.scm (spice),
* gnu/packages/statistics.scm (r-dt, r-lubridate, r-estimability,
r-commonmark, r-digest, r-viridislite, r-stringr),
* gnu/packages/tex.scm (texlive-latex-changebar),
* gnu/packages/version-control.scm (subversion),
* gnu/packages/w3m.scm (w3m),
* gnu/packages/web.scm (perl-http-parser,
perl-plack-middleware-reverseproxy),
* gnu/packages/xorg.scm (xkeyboard-config, mkfontdir, xcursor-theme,
mkfontscale, xinit, font-alias)[description]: Use @code instead of quotes.
 2019-03-31 20:51:10 +03:00
Marius Bakke
8c14f7f8a7
Merge branch 'staging' into core-updates 2019-03-23 23:16:55 +01:00
Marius Bakke
3cb61ca85a
Merge branch 'master' into staging 2019-03-23 22:50:07 +01:00
Marius Bakke
5e7e193b71
gnu: tdb: Update to 1.4.0. 
* gnu/packages/databases.scm (tdb): Update to 1.4.0.
 2019-03-23 22:43:59 +01:00
Marius Bakke
081850816f
Merge branch 'master' into staging 2019-03-21 23:18:54 +01:00
Ricardo Wurmus
0fa926c2e5
gnu: python-pyarrow: Update to 0.10.0. 
* gnu/packages/databases.scm (python-pyarrow): Update to 0.10.0.
[arguments]: Delete "build" phase.
[native-inputs]: Add python-pytest-runner.
 2019-03-18 23:46:27 +01:00
Ricardo Wurmus
e58d3a5926
gnu: apache-arrow: Update to 0.10.0. 
* gnu/packages/databases.scm (apache-arrow): Update to 0.10.0.
[inputs]: Replace jemalloc-4.5.0 with jemalloc.
 2019-03-18 23:46:27 +01:00
ng0
47956fa0c2
Correct name and email address for ng0. 
* .mailmap, Makefile.am, doc/guix.de.texi, doc/guix.fr.texi,
doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm,
gnu/packages/guile-wm.scm,gnu/packages/guile-xyz.scm,
gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm,
gnu/packages/language.scm, gnu/packages/libcanberra.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm:
Correct name and email address for ng0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-03-18 15:05:08 +01:00
Leo Famulari
e3900a4d64
build-system/go: Build with a filesystem union of Go dependencies. 
This basically changes (guix build-system go) so that instead of looking
up its dependencies in a list of directories in $GOPATH, all the
Go dependencies are symlinked into a single directory.

Fixes <https://bugs.gnu.org/33620>.

* guix/build/go-build-system.scm (setup-go-environment): New variable.
(setup-environment, install-source): Remove variables.
(unpack): Unpack the source relative to $GOPATH.
(install): Do not install the compiled objects in the 'pkg' directory.
Install the source code in this phase, and only install the source of
the package named by IMPORT-PATH.
* doc/guix.texi (Build Systems): Adjust accordingly.
* gnu/packages/docker.scm (docker): Import (guix build union) on the build side
and adjust to build phase name changes in (guix build-system go).
* gnu/packages/shellutils.scm (direnv): Likewise.
* gnu/packages/databases.scm (mongo-tools)[arguments]:
Set '#:install-source #f'.
* gnu/packages/music.scm (demlo)[arguments]: Move the 'install-scripts'
phase after the 'install' phase.
 2019-03-14 15:34:26 -04:00
Marius Bakke
19008a22d1
Merge branch 'staging' into core-updates 2019-03-14 16:30:19 +01:00
Marius Bakke
ebfe259f66
Merge branch 'master' into staging 2019-03-14 15:06:06 +01:00
Tobias Geerinckx-Rice
5cfe650b9d
gnu: python-sqlalchemy: Use HTTPS home page. 
* gnu/packages/databases.scm (python-sqlalchemy)[home-page]: Use HTTPS.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice
6d04f694dc
gnu: python-sqlalchemy: Update to 1.3.1. 
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.1.
 2019-03-12 02:22:35 +01:00
Tobias Geerinckx-Rice
909404b571
gnu: python-sql: Update to 1.0.0. 
* gnu/packages/databases.scm (python-sql): Update to 1.0.0.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice
99e690a59a
gnu: python-pyodbc: Update to 4.0.25. 
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.25.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice
72b7de49b4
gnu: python-psycopg2: Update to 2.7.7. 
* gnu/packages/databases.scm (python-psycopg2): Update to 2.7.7.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice
d49bdbca5c
gnu: perl-dbd-sqlite: Update to 1.62. 
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.62.
 2019-03-12 02:22:34 +01:00
Tobias Geerinckx-Rice
49596a5413
gnu: perl-dbd-mysql: Update to 4.050. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.050.
 2019-03-12 02:22:33 +01:00
Tobias Geerinckx-Rice
2f813be342
gnu: perl-sql-abstract: Update to 1.86. 
* gnu/packages/databases.scm (perl-sql-abstract): Update to 1.86.
 2019-03-12 02:22:33 +01:00
Marius Bakke
e74f153a10
gnu: Use OpenSSL 1.1 as the default OpenSSL package. 
* gnu/packages/tls.scm (openssl-next): Delete variable.  Move related code ...
(openssl) ... here.
(openssl-1.0): New public variable.  Retain old arguments.
* gnu/packages/crypto.scm (asignify)[inputs]: Change OPENSSL-NEXT to OPENSSL.
* gnu/packages/databases.scm (mariadb)[inputs]: Change from OPENSSL to OPENSSL-1.0.
* gnu/packages/node.scm (node)[inputs]: Likewise.
* gnu/packages/rust.scm (rust-1.19)[inputs]: Likewise.
 2019-03-10 18:49:59 +01:00
Marius Bakke
4f8dc1536a
Merge branch 'master' into staging 2019-03-04 22:31:59 +01:00
Marius Bakke
5ae458befc
gnu: rocksdb: Update to 5.18.3. 
* gnu/packages/databases.scm (rocksdb): Update to 5.18.3.
 2019-03-04 22:20:08 +01:00
Julien Lepiller
865c76ea3b
gnu: python-rq: Update to 0.13.0. 
* gnu/packages/databases.scm (python-rq): Update to 0.13.0.
 2019-03-04 21:52:33 +01:00
Julien Lepiller
dcbe674c86
gnu: python-redis: Update to 3.2.0. 
* gnu/packages/databases.scm (python-redis): Update to 3.2.0.
 2019-03-04 21:52:17 +01:00
Marius Bakke
97dcedbd2a
gnu: tdb: Update to 1.3.18. 
* gnu/packages/databases.scm (tdb): Update to 1.3.18.
[native-inputs]: Add WHICH.  Change PYTHON-2 to PYTHON.
 2019-03-02 22:21:15 +01:00
Marius Bakke
19464173ba
Merge branch 'master' into staging 2019-03-01 17:33:00 +01:00
Tobias Geerinckx-Rice
4915894759
gnu: lmdb: Update to 0.9.23. 
* gnu/packages/databases.scm (lmdb): Update to 0.9.23.
 2019-02-27 15:48:53 +01:00
Tobias Geerinckx-Rice
f167b432bb
gnu: lmdb: Don't use unstable tarball. 
* gnu/packages/databases.scm (lmdb)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
[arguments]: Adjust source directory name.
 2019-02-27 15:48:53 +01:00
Marius Bakke
2c76e19df4
Merge branch 'master' into staging 2019-02-20 17:01:39 +01:00
Tobias Geerinckx-Rice
d84a20fb6b
gnu: memcached: Update to 1.5.12. 
* gnu/packages/databases.scm (memcached): Update to 1.5.12.
 2019-02-19 09:54:34 +01:00
Tobias Geerinckx-Rice
4cb2f29e3e
gnu: python-pymysql: Update to 0.9.3. 
* gnu/packages/databases.scm (python-pymysql): Update to 0.9.3.
 2019-02-19 09:53:41 +01:00
Tobias Geerinckx-Rice
2fc569a0fc
gnu: perl-db-file: Update to 1.843. 
* gnu/packages/databases.scm (perl-db-file): Update to 1.843.
 2019-02-19 09:53:41 +01:00
Marius Bakke
61506fe551
gnu: Remove unneeded uses of python{,2}-minimal. 
The "python-minimal" package exists mostly to resolve a dependency cycle.  To
reduce duplication, packages should prefer the regular Python variants.

* gnu/packages/admin.scm (htop)[native-inputs]: Change PYTHON-MINIMAL-WRAPPER
to PYTHON-WRAPPER.
* gnu/packages/crypto.scm (botan)[native-inputs]: Likewise.
* gnu/packages/bioinformatics.scm (sambamba)[native-inputs]: Change
PYTHON-MINIMAL to PYTHON.
* gnu/packages/dictionaries.scm (apertium)[native-inputs]: Likewise.
* gnu/packages/databases.scm (mongodb)[native-inputs]: Change PYTHON2-MINIMAL
to PYTHON2.
* gnu/packages/games.scm (openttd-opensfx, openttd-openmsx)[native-inputs]:
Likewise.
* gnu/packages/gnome.scm (deja-dup)[native-inputs]: Likewise.
 2019-02-17 18:44:18 +01:00
Leo Famulari
42ce9187fb
gnu: PostgreSQL 9.6: Update to 9.6.12. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.12.
 2019-02-14 14:46:32 -05:00
Leo Famulari
2950d33c6c
gnu: PostgreSQL: Update to 10.7. 
* gnu/packages/databases.scm (postgresql): Update to 10.7.
 2019-02-14 14:46:28 -05:00
Marius Bakke
6901878894
Merge branch 'master' into staging 2019-02-14 00:20:28 +01:00
Tobias Geerinckx-Rice
da93d42413
gnu: perl-dbi: Update to 1.642. 
* gnu/packages/databases.scm (perl-dbi): Update to 1.642.
 2019-02-12 17:38:21 +01:00
Tobias Geerinckx-Rice
245e7a68e7
gnu: kyotocabinet: Update to 1.2.77. 
* gnu/packages/databases.scm (kyotocabinet): Update to 1.2.77.
 2019-02-12 17:38:21 +01:00
Christopher Baines
8b7e6d005e
gnu: postgresql: Build with openssl support. 
* gnu/packages/databases.scm (postgresql)[arguments]: Add --with-openssl to
[inputs]: Add openssl.
 2019-02-11 09:52:08 +00:00
Marius Bakke
0ce64334e6
gnu: mariadb: Update to 10.1.38. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.38.
 2019-02-10 21:04:23 +01:00
Marius Bakke
69fb26d4f5
gnu: mariadb: Add comments about failing tests. 
* gnu/packages/databases.scm (mariadb): Add comments.
 2019-02-06 23:30:34 +01:00
Marius Bakke
0747328e31
Merge branch 'master' into staging 2019-01-31 23:32:56 +01:00
Ricardo Wurmus
aeec4a8fc1
gnu: python-sqlalchemy: Use PYPI-URI. 
* gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
 2019-01-25 23:18:55 +01:00
Carl Dong
38f77be464
gnu: mariadb: Disable sporadically failing tests. 
* guix/packages/databases.scm: Disable sporadically failing tests.

Signed-off-by: Eric Bavier <bavier@member.fsf.org>
 2019-01-22 21:42:52 -06:00
Ludovic Courtès
3e2d4e69c3
Merge branch 'master' into staging 2019-01-20 22:12:10 +01:00
Ricardo Wurmus
255d1bbe77
gnu: Move dbm databases to new module. 
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here...
* gnu/packages/dbm.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/audio.scm,
gnu/packages/avahi.scm,
gnu/packages/backup.scm,
gnu/packages/cobol.scm,
gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm,
gnu/packages/finance.scm,
gnu/packages/game-development.scm,
gnu/packages/gnome.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/linux.scm,
gnu/packages/mail.scm,
gnu/packages/man.scm,
gnu/packages/nvi.scm,
gnu/packages/openldap.scm,
gnu/packages/package-management.scm,
gnu/packages/php.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/sawfish.scm: Update module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus
cd0322a3ef
gnu: Move sqlite to separate module. 
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5,
sqlite-with-column-metadata): Move variables from here...
* gnu/packages/sqlite.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/apl.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/code.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/dc.scm,
gnu/packages/disk.scm,
gnu/packages/ebook.scm,
gnu/packages/education.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/file-systems.scm,
gnu/packages/freedesktop.scm,
gnu/packages/ftp.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gnome.scm,
gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/gps.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/kodi.scm,
gnu/packages/lisp.scm,
gnu/packages/mail.scm,
gnu/packages/messaging.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nfs.scm,
gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/php.scm,
gnu/packages/python.scm,
gnu/packages/qt.scm,
gnu/packages/ruby.scm,
gnu/packages/scheme.scm,
gnu/packages/sync.scm,
gnu/packages/syndication.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/web-browsers.scm,
gnu/packages/webkit.scm: Adjust module references.
 2019-01-16 16:08:22 +01:00
Ricardo Wurmus
44d10b1f72
gnu: Separate Python core packages from the rest. 
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
 2019-01-15 14:46:44 +01:00
Efraim Flashner
0e28967250
Merge remote-tracking branch 'origin/master' into staging 2019-01-09 10:52:41 +02:00
Ricardo Wurmus
d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm 
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
 2019-01-07 15:55:06 +01:00
Efraim Flashner
c007e35d24
gnu: recutils: Update to 1.8. 
* gnu/packages/databases.scm (recutils): Update to 1.8.
[source]: Remove snippet.
[arguments]: Remove custom 'set-bash4.4-header-location phase. Enable
parallel tests.
[inputs]: Move check ...
[native-inputs]: ... to here. Add pkg-config.
 2019-01-06 15:42:06 +02:00
Marius Bakke
f30830b2e6
Merge branch 'master' into staging 2018-12-22 15:26:30 +01:00
Alex Vong
38abef124b
gnu: sqlite: Replace with 3.26.0 [security fixes]. 
Fixes <https://bugs.gnu.org/33751>.
Reported by Marius Bakke <mbakke@fastmail.com>.

* gnu/packages/databases.scm (sqlite-3.26.0): New public variable.
(sqlite)[replacement]: Use it.
(sqlite-with-fts5): Use 'package/inherit'.
(sqlite-with-column-metadata): Likewise.

Modified-by: Mark H Weaver <mhw@netris.org>
 2018-12-18 20:20:16 -05:00
Marius Bakke
fbb7b04a85
Merge branch 'master' into staging 2018-12-09 00:18:32 +01:00
Christopher Baines
fe5969656a
gnu: mongo-tools: Fix build. 
I guess this broke when upgrading go. I did try upgrading to the later patch
and minor releases, but they had similar problems, so lets upgrade separately.

* gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
 2018-12-04 20:27:04 +00:00
Marius Bakke
99f63f011d
Merge branch 'master' into staging 2018-12-03 19:15:17 +01:00
Marius Bakke
25ca46985c
Merge branch 'master' into core-updates 2018-11-29 15:56:49 +01:00
Brett Gilio
682c291899
gnu: sqlcipher: Update to 3.4.2. 
* gnu/packages/databases.scm (sqlcipher): Update to 3.4.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-24 22:40:46 +01:00
Marius Bakke
52b24ba495
gnu: mariadb: Update to 10.1.37 [security fixes]. 
This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156,
and CVE-2018-3251.  See
<https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details.

* gnu/packages/databases.scm (mariadb): Update to 10.1.37.
 2018-11-24 02:03:12 +01:00
Mark H Weaver
96272e2822
gnu: databases: Return #t from all phases. 
* gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb)
(sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from
all phases, use invoke where appropriate, and remove vestigial plumbing.
 2018-11-14 23:44:16 -05:00
Marius Bakke
79ee97a144
Merge branch 'master' into core-updates 2018-11-14 21:20:46 +01:00
Leo Famulari
ec35067631
gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850]. 
* gnu/packages/databases.scm (postgresql): Update to 10.6.
 2018-11-11 14:10:03 -05:00
Efraim Flashner
22d04ceda0
gnu: python-rq: Update to 0.12.0. 
* gnu/packages/databases.scm (python-rq): Update to 0.12.0.
 2018-11-11 11:54:28 +02:00
Efraim Flashner
c92d056a8b
gnu: python-alembic: Update to 1.0.2. 
* gnu/packages/databases.scm (python-alembic, python2-alembic): Update
to 1.0.2.
 2018-11-11 11:13:53 +02:00
Ricardo Wurmus
f1f1cebdd3
gnu: mdbtools: Fetch sources from git. 
* gnu/packages/databases.scm (mdbtools)[source]: Fetch from git.
 2018-11-11 10:09:54 +01:00
Ricardo Wurmus
f626b71923
gnu: mdbtools: Remove custom bootstrap phase. 
* gnu/packages/databases.scm (mdbtools)[arguments]: Remove.
 2018-11-11 10:05:56 +01:00
Marius Bakke
64461ba20a
Merge branch 'master' into core-updates 2018-11-09 17:02:08 +01:00
Leo Famulari
41d2b7f50b
gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850]. 
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
 2018-11-08 13:42:56 -05:00
Marius Bakke
e2568df74e
gnu: rocksdb: Update to 5.15.10. 
* gnu/packages/databases.scm (rocksdb): Update to 5.15.10.
 2018-11-07 16:06:56 +01:00
Marius Bakke
8dd3665883
gnu: rocksdb: Don't use unstable tarball. 
* gnu/packages/databases.scm (rocksdb)[source]: Use GIT-FETCH.
 2018-11-07 16:06:56 +01:00