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62495 commits

Author SHA1 Message Date
Ricardo Wurmus 939ace9624
gnu: r-watermelon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.32.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus cad8a5099a
gnu: r-roc: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.64.0.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus b32808831c
gnu: r-genie3: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:59 +02:00
Ricardo Wurmus e677c9b501
gnu: r-cicero: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 93235b1eb3
gnu: r-rcistarget: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.8.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus af66e35d31
gnu: r-depecher: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 7bec32fe53
gnu: r-mixomics: Update to 6.12.1.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.1.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 32bd0295c8
gnu: r-flowsom: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.20.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8d5a83b7c6
gnu: r-cytoml: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.0.
[propagated-inputs]: Remove r-ncdfflow; add r-rcpparmadillo, r-rhdf5lib, and
r-tibble.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 8f5e16742d
gnu: r-opencyto: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.0.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 372caae6a9
gnu: r-flowstats: Update to 4.0.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.0.0.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus a9af09df17
gnu: r-flowworkspace: Update to 4.0.3.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.3.
[propagated-inputs]: Remove r-flowviz, r-gridextra, and r-rcolorbrewer; add
r-ggplot2, r-rcpparmadillo, r-rhdf5lib, and r-xml.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus bafade83c1
gnu: r-rprotobuflib: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.0.0.
[arguments]: Adjust phase "unpack-bundled-sources".
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus b347d6c32b
gnu: r-flowclust: Update to 3.26.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.26.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 062789b87a
gnu: r-flowviz: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.52.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 3407dfa61f
gnu: r-ggcyto: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.16.0.
[propagated-inputs]: Add r-hexbin.
2020-06-13 01:19:58 +02:00
Ricardo Wurmus 631b12ca71
gnu: r-ncdfflow: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.34.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 76b163d616
gnu: r-flowmeans: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.48.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus faff2de0da
gnu: r-flowcore: Update to 2.0.1.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.0.1.
[propagated-inputs]: Add r-rcpparmadillo and r-rprotobuflib.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 3c73d7c5e4
gnu: r-cytolib: Update to 2.0.3.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.0.3.
[inputs]: Add zlib.
[propagated-inputs]: Add r-bh, r-rcpp, r-rcpparmadillo, r-rcppparallel,
r-rhdf5lib, and r-rprotobuflib.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 0c2573e7f1
gnu: r-consensusclusterplus: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.52.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 6954950f4a
gnu: r-flowutils: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.52.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5d63f69be9
gnu: r-rsubread: Update to 2.2.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.2.
[propagated-inputs]: Add r-matrix.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 5ca991bff9
gnu: r-annotatr: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 8b6f26e634
gnu: r-biosigner: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.16.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 77334168cf
gnu: r-ropls: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.20.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus 905bbb13da
gnu: r-multidataset: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus cb941ca06d
gnu: r-birta: Update to 1.31.0.
* gnu/packages/bioconductor.scm (r-birta): Update to 1.31.0.
2020-06-13 01:19:57 +02:00
Ricardo Wurmus f50609aba5
gnu: r-birewire: Update to 3.20.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.20.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 1c5360ac3d
gnu: r-rqc: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus a84abf434d
gnu: r-quasr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 2aff2724ef
gnu: r-rhisat2: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.4.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 201902bc05
gnu: r-sgseq: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 568c3929b6
gnu: r-rbowtie: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus ca8d80c90c
gnu: r-iclusterplus: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.24.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 173844fc75
gnu: r-biocfilecache: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 989b7bb625
gnu: r-arrmnormalization: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.28.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8e5933a8e4
gnu: r-progeny: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.10.0.
[propagated-inputs]: Add r-dplyr, r-ggplot2, r-ggrepel, r-gridextra, and
r-tidyr.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 297854e682
gnu: r-rbowtie2: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 8fdca89b56
gnu: r-zfpkm: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 620cc4d976
gnu: r-webbioc: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.60.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus 08c4d31400
gnu: r-widgettools: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.66.0.
2020-06-13 01:19:56 +02:00
Ricardo Wurmus ee0f746088
gnu: r-wiggleplotr: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 996f07b591
gnu: r-wrench: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.6.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus ff9f179a0c
gnu: r-xcms: Update to 3.10.1.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.1.
[propagated-inputs]: Remove r-multtest; add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 11cf2d7bb7
gnu: r-massspecwavelet: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.54.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus bcd06bdbff
gnu: r-xbseq: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 1ec10e1987
gnu: r-roar: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.24.0.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus a37a6ffb2d
gnu: r-yarn: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00
Ricardo Wurmus 70d90ae76d
gnu: r-quantro: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:55 +02:00