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99 commits

Author SHA1 Message Date
Ricardo Wurmus
09d2976c86
gnu: python-plotly-2.4.1: Patch for Python 3.10 changes.
* gnu/packages/graph.scm (python-plotly-2.4.1)[arguments]: Add phase
'python-compatibility.
2023-04-24 19:49:04 +02:00
Sharlatan Hellseher
1c0056876c
gnu: python-plotly: Fix version detection.
* gnu/packages/graph.scm (python-plotly): Apply new package style.
[arguments]: Add new fix-version phase.
[arguments]{phases}: chdir phase, remove trailing #f from lambda.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-03-16 00:10:59 +01:00
Ale Abdo
f04a523137
gnu: python-graph-tool: Update to 2.46.
* gnu/packages/graph.scm (python-graph-tool): Update to 2.46.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-03-13 20:33:48 +00:00
Tobias Geerinckx-Rice
1e6ddceb83
gnu: Use HTTPS package home pages wherever possible.
* gnu/packages/accessibility.scm (florence)[home-page]: Use HTTPS.
* gnu/packages/admin.scm (netcat, nmon)[home-page]: Likewise.
* gnu/packages/algebra.scm (mpfrcx, cm, flint, fftw, r-dtt)[home-page]:
Likewise.
* gnu/packages/apr.scm (apr, apr-util)[home-page]: Likewise.
* gnu/packages/aspell.scm (aspell-dict-it)[home-page]: Likewise.
* gnu/packages/astronomy.scm (casacore, sextractor, libnova)
(xplanet)[home-page]: Likewise.
* gnu/packages/audio.scm (libtimidity, alsa-modular-synth, azr3, tao)
(freepats, rakarrack, liblo, libshout-idjc, timidity++, libsbsms)
(libmodplug, libxmp, xmp, sox, drc, gsm, gnaural)
(streamripper)[home-page]: Likewise.
* gnu/packages/authentication.scm (pamtester)[home-page]: Likewise.
* gnu/packages/backup.scm (grsync)[home-page]: Likewise.
* gnu/packages/bioconductor.scm (r-nmf, r-edger, r-limma)
(r-plgem)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (python-biom-format, bowtie, bowtie1)
(bwa, crossmap, java-htsjdk, java-htsjdk-latest, java-picard)
(java-picard-2.10.3, kaiju, proteinortho, rsem, rseqc, seek, samtools)
(snap-aligner, subread, stringtie, r-centipede, prinseq, emboss, phylip)
(libsbml)[home-page]: Likewise.
* gnu/packages/build-tools.scm (tup)[home-page]: Likewise.
* gnu/packages/cdrom.scm (libcddb, cdrdao, cdrtools)
(cd-discid)[home-page]: Likewise.
* gnu/packages/check.scm (cunit, python-nose)
(python-pyhamcrest)[home-page]: Likewise.
* gnu/packages/chemistry.scm (gromacs)[home-page]: Likewise.
* gnu/packages/chez.scm (chez-fmt)[home-page]: Likewise.
* gnu/packages/code.scm (lcov, uncrustify, cscope)[home-page]: Likewise.
* gnu/packages/compression.scm (p7zip)[home-page]: Likewise.
* gnu/packages/cran.scm (r-emdist, r-proj4, r-zoo, r-ggalluvial)
(r-orgmassspecr, r-polychrome, r-partykit, r-rcpp, r-ff, r-emdbook)
(r-fitdistrplus, r-linprog, r-geometry, r-dtw, r-fst, r-rjags)
(r-intergraph, r-qualv, r-labelled, r-survey, r-coin, r-fmsb, r-tm)
(r-corpcor, r-rmpfr, r-spatialextremes, r-longitudinal, r-genenet)
(r-bayesm, r-seqinr, r-mpm, r-text2vec, r-rgdal, r-seewave, r-hdrcde)
(r-shapes, r-anytime, r-stm, r-d3network, r-tam, r-directlabels)
(r-spatstat-utils, r-spatstat-sparse, r-spatstat-data, r-spatstat-geom)
(r-spatstat-core, r-spatstat-linnet, r-spatstat-random, r-spatstat)
(r-rcpptoml, r-mlecens, r-seurat, r-mlearning, r-zooimage)[home-page]:
Likewise.
* gnu/packages/crates-io.scm (rust-nickel-0.11, rust-thrift-0.13)
(rust-trust-dns-https-0.20, rust-trust-dns-native-tls-0.20)
(rust-trust-dns-openssl-0.20, rust-trust-dns-proto-0.20)
(rust-trust-dns-resolver-0.20, rust-trust-dns-rustls-0.20)
(rust-uint-0.9, rust-yaml-rust-0.4)[home-page]: Likewise.
* gnu/packages/crypto.scm (libdecaf, ccrypt)[home-page]: Likewise.
* gnu/packages/curl.scm (curlpp)[home-page]: Likewise.
* gnu/packages/databases.scm (python-pylibmc, unixodbc, wiredtiger)
(libpqxx, mdbtools, virtuoso-ose, libdbi, libdbi-drivers)
(soci)[home-page]: Likewise.
* gnu/packages/debian.scm (apt-mirror)[home-page]: Likewise.
* gnu/packages/debug.scm (remake)[home-page]: Likewise.
* gnu/packages/disk.scm (sdparm, idle3-tools, duc)[home-page]: Likewise.
* gnu/packages/django.scm (python-django-haystack)[home-page]: Likewise.
* gnu/packages/djvu.scm (djvulibre, djview)[home-page]: Likewise.
* gnu/packages/dns.scm (dnsmasq)[home-page]: Likewise.
* gnu/packages/docbook.scm (dblatex, docbook2x)[home-page]: Likewise.
* gnu/packages/documentation.scm (scrollkeeper)[home-page]: Likewise.
* gnu/packages/ebook.scm (liblinebreak)[home-page]: Likewise.
* gnu/packages/electronics.scm (xoscope)[home-page]: Likewise.
* gnu/packages/emacs-xyz.scm (emacs-bbdb, emacs-caps-lock, emacs-djvu)
(emacs-pabbrev, emacs-twittering-mode, emacs-filladapt, emacs-rudel)
(emacs-stream, emacspeak, emacs-cc-mode, emacs-eldoc, emacs-jsonrpc)
(emacs-gtk-look, emacs-xclip, emacs-slime-volleyball, emacs-minimap)
(emacs-auto-dictionary-mode, emacs-persist, emacs-shell-command+)
(emacs-map, emacs-xref, emacs-dictionary)[home-page]: Likewise.
* gnu/packages/embedded.scm (sdcc)[home-page]: Likewise.
* gnu/packages/engineering.scm (asco, libngspice, libspnav)
(openctm)[home-page]: Likewise.
* gnu/packages/erlang.scm (erlang-erlware-commons)[home-page]: Likewise.
* gnu/packages/file-systems.scm (jfsutils, curlftpfs)[home-page]:
Likewise.
* gnu/packages/finance.scm (gbonds)[home-page]: Likewise.
* gnu/packages/flashing-tools.scm (dfu-util, srecord)[home-page]:
Likewise.
* gnu/packages/fltk.scm (ntk)[home-page]: Likewise.
* gnu/packages/fonts.scm (font-terminus, font-tex-gyre)
(font-comic-neue)[home-page]: Likewise.
* gnu/packages/fontutils.scm (ttf2pt1, potrace, libspiro)[home-page]:
Likewise.
* gnu/packages/fpga.scm (icestorm, gtkwave, gtkwave)
(python-myhdl)[home-page]: Likewise.
* gnu/packages/freedesktop.scm (libatasmart)[home-page]: Likewise.
* gnu/packages/ftp.scm (weex)[home-page]: Likewise.
* gnu/packages/game-development.scm (dds, python-tmx, sfxr, quesoglc)
(eureka, plib)[home-page]: Likewise.
* gnu/packages/games.scm (abe, alex4, armagetronad, barony)
(foobillard++, golly, ltris, pipewalker, prboom-plus, trigger-rally)
(cmatrix, pinball, pioneers, tennix, chromium-bsu, freeciv, kiki)
(quakespasm, frotz, frotz-dumb-terminal, frotz-sdl, btanks)
(flare-engine, chessx, barrage, cgoban, passage)[home-page]: Likewise.
* gnu/packages/geo.scm (python-geopandas, saga)[home-page]: Likewise.
* gnu/packages/gl.scm (freeglut, gl2ps)[home-page]: Likewise.
* gnu/packages/gnome.scm (cogl, clutter-gtk, clutter-gst, bluefish)
(workrave)[home-page]: Likewise.
* gnu/packages/gnustep.scm (wmnd, wmfire, wmfire)[home-page]: Likewise.
* gnu/packages/graph.scm (mscgen)[home-page]: Likewise.
* gnu/packages/graphics.scm (assimp, alembic, ctl, agg)
(opencsg)[home-page]: Likewise.
* gnu/packages/graphviz.scm (gts)[home-page]: Likewise.
* gnu/packages/gtk.scm (gtkspell3)[home-page]: Likewise.
* gnu/packages/guile-xyz.scm (guile-irregex)[home-page]: Likewise.
* gnu/packages/haskell-apps.scm (cpphs)[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-hunit)[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-http-client-restricted)
(ghc-blaze-html, ghc-happstack-server, ghc-sourcemap)[home-page]:
Likewise.
* gnu/packages/haskell-xyz.scm (ghc-assoc, ghc-cairo, ghc-cborg)
(ghc-csv, ghc-glob, ghc-gtk2hs-buildtools, ghc-hmatrix-gsl-stats)
(ghc-intervalmap, ghc-lens-family-core, ghc-managed, ghc-mountpoints)
(ghc-network-multicast, ghc-optional-args, ghc-regex, ghc-spoon)
(ghc-transformers, ghc-turtle, ghc-utf8-light, ghc-wizards)
(ghc-template-haskell, ghc-boot-th, ghc-binary-orphans)
(ghc-postgresql-simple)[home-page]: Likewise.
* gnu/packages/hexedit.scm (ht, bvi)[home-page]: Likewise.
* gnu/packages/hunspell.scm (hunspell-dict-hu)[home-page]: Likewise.
* gnu/packages/image-processing.scm (mia)[home-page]: Likewise.
* gnu/packages/image-viewers.scm (geeqie, gpicview, luminance-hdr)
(qiv)[home-page]: Likewise.
* gnu/packages/image.scm (libuemf, devil, steghide, optipng, niftilib)
(sng, mtpaint)[home-page]: Likewise.
* gnu/packages/java-xml.scm (java-simple-xml, java-jaxp)
(java-apache-xml-commons-resolver)[home-page]: Likewise.
* gnu/packages/java.scm (java-cisd-base, java-cisd-args4j)
(java-hamcrest-core, java-jsr305, java-eclipse-osgi)
(java-eclipse-equinox-common, java-eclipse-core-jobs)
(java-eclipse-equinox-registry, java-eclipse-equinox-app)
(java-eclipse-equinox-preferences, java-eclipse-core-contenttype)
(java-eclipse-text, java-treelayout, java-aopalliance, java-jeromq)
(java-cdi-api)[home-page]: Likewise.
* gnu/packages/jemalloc.scm (jemalloc-4.5.0)[home-page]: Likewise.
* gnu/packages/julia-xyz.scm (julia-recipespipeline)[home-page]:
Likewise.
* gnu/packages/kde-internet.scm (kget)[home-page]: Likewise.
* gnu/packages/kde-systemtools.scm (dolphin-plugins)
(konsole)[home-page]: Likewise.
* gnu/packages/kodi.scm (fstrcmp)[home-page]: Likewise.
* gnu/packages/language.scm (hime, libchewing)[home-page]: Likewise.
* gnu/packages/lego.scm (nqc)[home-page]: Likewise.
* gnu/packages/lesstif.scm (lesstif)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (libcanberra)[home-page]: Likewise.
* gnu/packages/libdaemon.scm (libdaemon)[home-page]: Likewise.
* gnu/packages/libffi.scm (libffi)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (libwpd, libwpg, libwps)[home-page]:
Likewise.
* gnu/packages/libusb.scm (libmtp, gmtp)[home-page]: Likewise.
* gnu/packages/linux.scm (e2fsprogs, extundelete, lsscsi, net-tools)
(kbd, sysfsutils, cpuid, libpfm4)[home-page]: Likewise.
* gnu/packages/lisp-check.scm (sbcl-ptester, sbcl-xlunit)[home-page]:
Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-html-encode, sbcl-py-configparser)
(sbcl-cl-utilities, sbcl-series, sbcl-uffi, sbcl-clsql, sbcl-sycamore)
(sbcl-osicat, sbcl-hu.dwim.common, sbcl-caveman, sbcl-trivial-shell)
(sbcl-trivial-benchmark, sbcl-screamer, sbcl-smug)[home-page]: Likewise.
* gnu/packages/lisp.scm (lush2)[home-page]: Likewise.
* gnu/packages/logging.scm (log4cpp)[home-page]: Likewise.
* gnu/packages/lua.scm (lua-ldoc)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (mcl, openfst, rxcpp)[home-page]:
Likewise.
* gnu/packages/mail.scm (muchsync, procmail, sendmail)
(opensmtpd-filter-dkimsign, crm114)[home-page]: Likewise.
* gnu/packages/man.scm (libpipeline, man-db)[home-page]: Likewise.
* gnu/packages/maths.scm (lapack, scalapack, hdf-eos5, itpp, gmsh)
(metamath, p4est, armadillo, suitesparse, atlas, lpsolve, wcalc, why3)
(frama-c)[home-page]: Likewise.
* gnu/packages/mcrypt.scm (mcrypt, libmcrypt, libmhash)[home-page]:
Likewise.
* gnu/packages/minetest.scm (minetest-advtrains)[home-page]: Likewise.
* gnu/packages/monitoring.scm (python-whisper, python-carbon)
(hostscope)[home-page]: Likewise.
* gnu/packages/mp3.scm (id3lib, libmp3splt, mp3splt, mpg321)
(lame)[home-page]: Likewise.
* gnu/packages/multiprecision.scm (mpc)[home-page]: Likewise.
* gnu/packages/music.scm (aria-maestosa, lingot, setbfree, bristol)
(portmidi, python-pyportmidi, zynaddsubfx, yoshimi, aj-snapshot)
(schismtracker, midicsv, midicsv, qmidiarp, qmidiroute, dssi, tap-lv2)
(shiru-lv2)[home-page]: Likewise.
* gnu/packages/ncurses.scm (stfl)[home-page]: Likewise.
* gnu/packages/networking.scm (lksctp-tools, mbuffer, ifstatus, bird)
(tunctl, traceroute)[home-page]: Likewise.
* gnu/packages/node-xyz.scm (node-mersenne)[home-page]: Likewise.
* gnu/packages/ntp.scm (openntpd)[home-page]: Likewise.
* gnu/packages/ocaml.scm (opam, hevea, ocaml-menhir, ocaml-piqilib)
(ocaml-graph, cubicle)[home-page]: Likewise.
* gnu/packages/opencl.scm (python-pyopencl)[home-page]: Likewise.
* gnu/packages/package-management.scm (xstow, modules)[home-page]:
Likewise.
* gnu/packages/parallel.scm (xjobs)[home-page]: Likewise.
* gnu/packages/pdf.scm (podofo, qpdf, xournal, impressive)[home-page]:
Likewise.
* gnu/packages/perl.scm (perl-math-vecstat, perltidy)[home-page]:
Likewise.
* gnu/packages/photo.scm (libpano13, enblend-enfuse, hugin)[home-page]:
Likewise.
* gnu/packages/plan9.scm (drawterm)[home-page]: Likewise.
* gnu/packages/plotutils.scm (guile-charting, ploticus)[home-page]:
Likewise.
* gnu/packages/popt.scm (argtable, popt)[home-page]: Likewise.
* gnu/packages/profiling.scm (otf2)[home-page]: Likewise.
* gnu/packages/pulseaudio.scm (pulseaudio)[home-page]: Likewise.
* gnu/packages/python-check.scm (python-mypy)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-cssutils)
(python-translationstring)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-diskcache, python-doxyqml)
(python-docutils, python-pexpect, python-importlib-resources)
(python-simplegeneric, python-urwid, python-xlrd, python-xlwt)
(python-pyasn1, python-pythondialog, python-tftpy, python-random2)
(python-arcp, python-pyopengl, python-sortedcollections)
(python-sortedcontainers, python-yapsy, python-pydispatcher)
(python-posix-ipc)[home-page]: Likewise.
* gnu/packages/qt.scm (qwt, libqglviewer, signond)[home-page]: Likewise.
* gnu/packages/radio.scm (unixcw, gnuais)[home-page]: Likewise.
* gnu/packages/raspberry-pi.scm (bcm2835)[home-page]: Likewise.
* gnu/packages/rdf.scm (clucene, rasqal, redland)[home-page]: Likewise.
* gnu/packages/regex.scm (tre)[home-page]: Likewise.
* gnu/packages/rsync.scm (librsync)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-packnga, ruby-nokogiri, ruby-oj, ruby-ox)
(ruby-sinatra, ruby-citrus, ruby-cbor, ruby-roda)[home-page]: Likewise.
* gnu/packages/scheme.scm (scheme48, tinyscheme)[home-page]: Likewise.
* gnu/packages/screen.scm (dtach)[home-page]: Likewise.
* gnu/packages/scsi.scm (sg3-utils)[home-page]: Likewise.
* gnu/packages/sdl.scm (libmikmod, sdl-pango)[home-page]: Likewise.
* gnu/packages/shellutils.scm (hstr, rig)[home-page]: Likewise.
* gnu/packages/simulation.scm (python-dolfin-adjoint)[home-page]:
Likewise.
* gnu/packages/smalltalk.scm (smalltalk)[home-page]: Likewise.
* gnu/packages/speech.scm (espeak)[home-page]: Likewise.
* gnu/packages/stalonetray.scm (stalonetray)[home-page]: Likewise.
* gnu/packages/statistics.scm (jags, r-mass, r-class, r-lattice)
(r-matrix, r-nnet, r-spatial, r-bit, r-bit64, r-digest, r-xtable)
(python-statsmodels, r-ade4, r-latticeextra, r-rcurl, r-xml, r-mvtnorm)
(r-robustbase, r-minqa, r-fdrtool, java-jdistlib, xlispstat)[home-page]:
Likewise.
* gnu/packages/swig.scm (swig)[home-page]: Likewise.
* gnu/packages/task-management.scm (wtime)[home-page]: Likewise.
* gnu/packages/tcl.scm (itcl, tclxml, tclx)[home-page]: Likewise.
* gnu/packages/terminals.scm (libtermkey, mlterm, libvterm)
(libvterm)[home-page]: Likewise.
* gnu/packages/tex.scm (texlive-lm, texlive-lm-math, texlive-cs)
(texlive-csplain, biber, texmaker)[home-page]: Likewise.
* gnu/packages/text-editors.scm (joe)[home-page]: Likewise.
* gnu/packages/textutils.scm (drm-tools, docx2txt)[home-page]: Likewise.
* gnu/packages/tv.scm (tvtime)[home-page]: Likewise.
* gnu/packages/unicode.scm (libunibreak)[home-page]: Likewise.
* gnu/packages/upnp.scm (libupnp)[home-page]: Likewise.
* gnu/packages/version-control.scm (cvs)[home-page]: Likewise.
* gnu/packages/video.scm (transcode, libquicktime, mjpegtools, aalib)
(liba52, libmpeg2, x265, libdv, dvdauthor, aegisub, pitivi, gavl)
(dvdbackup, guvcview, video-contact-sheet)[home-page]: Likewise.
* gnu/packages/virtualization.scm (bochs)[home-page]: Likewise.
* gnu/packages/w3m.scm (w3m)[home-page]: Likewise.
* gnu/packages/web.scm (qjson, libquvi-scripts, libquvi, quvi)
(tidy-html, htmlcxx)[home-page]: Likewise.
* gnu/packages/wm.scm (evilwm, menumaker)[home-page]: Likewise.
* gnu/packages/wv.scm (wv)[home-page]: Likewise.
* gnu/packages/wxwidgets.scm (wxsvg)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (mtdev, xsel)[home-page]: Likewise.
* gnu/packages/xfig.scm (xfig, transfig)[home-page]: Likewise.
* gnu/packages/xml.scm (openjade, python-pyxb, xmlstarlet, xmlrpc-c)
(opensp)[home-page]: Likewise.
* gnu/packages/xorg.scm (xf86-video-qxl)[home-page]: Likewise.
2023-02-19 01:00:01 +01:00
Ricardo Wurmus
cf981657a1
gnu: Add python-vtraag-louvain.
* gnu/packages/graph.scm (python-vtraag-louvain): New variable.
2023-02-10 19:36:36 +01:00
Maxim Cournoyer
608f0c9f27
gnu: Remove python-louvain-0.7.
* gnu/packages/graph.scm (python-louvain-0.7): Delete variable.
2023-01-27 14:08:56 -05:00
Maxim Cournoyer
68e4ec9ccf
gnu: python-leidenalg: Update to 0.9.1.
* gnu/packages/graph.scm (python-leidenalg): Update to 0.9.1.
2023-01-27 14:08:55 -05:00
Maxim Cournoyer
c539be939b
gnu: python-igraph: Update to 0.10.4-0.b6ebd8e.
* gnu/packages/graph.scm (python-igraph): Update to 0.10.4-0.b6ebd8e.
[build-system]: Use pyproject-build-system.
[phases]: Delete check phase override.
2023-01-27 14:08:55 -05:00
Maxim Cournoyer
0b1fae08d0
gnu: rw: Update to 0.9 and apply a patch to build with igraph >= 0.10.
* gnu/packages/patches/rw-igraph-0.10.patch: New file.
* gnu/local.mk: Register it.
* gnu/packages/graph.scm (rw): Update to 0.9.  Apply patch.
2023-01-27 14:08:55 -05:00
Maxim Cournoyer
a8754d3160
gnu: igraph: Update to 0.10.4.
* gnu/packages/graph.scm (igraph): Update to 0.10.4.
[source]: Modify to preserve the bundled cs and pcg libraries, which cannot be
used from the system.
[arguments]: Use gexps, and provide the #:test-target argument.
[inputs]: Delete suitesparse.
[propagated-inputs]: New field.
2023-01-27 14:08:55 -05:00
Marius Bakke
edbacab995
gnu: Use old setuptools in packages that relies on use_2to3 conversion.
This fixes a regression since 520cdf8058 where
the use_2to3 functionality was removed from setuptools.

* gnu/packages/graph.scm (python-louvain)[native-inputs]: Change from
PYTHON-SETUPTOOLS to PYTHON-SETUPTOOLS-57.
* gnu/packages/python-check.scm (python-parameterizedtestcase)[native-inputs]:
Likewise.
* gnu/packages/python-xyz.scm (python-anyjson)[native-inputs]: Add
PYTHON-SETUPTOOLS-57.
* gnu/packages/bioinformatics.scm (python-pyvcf)[native-inputs]: Change from
PYTHON-SETUPTOOLS-FOR-TENSORFLOW to PYTHON-SETUPTOOLS-57.
2023-01-07 21:04:26 +01:00
Tobias Geerinckx-Rice
3ad8bcae5d
gnu: plfit: Update to 0.9.4.
* gnu/packages/graph.scm (plfit): Update to 0.9.4.
2022-12-11 01:00:02 +01:00
Greg Hogan
582b1f626f
gnu: python-louvain: Fix test.
* gnu/packages/graph.scm (python-louvain)[source]: Add patch.
* gnu/packages/patches/python-louvain-fix-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-10-02 23:22:07 +02:00
vicvbcun
2e821717d3
gnu: edge-addition-planarity-suite: Update to 3.0.2.0.
* gnu/packages/graph.scm (edge-addition-planarity-suite): Update to 3.0.2.0.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2022-08-12 10:10:26 +02:00
Ale Abdo
b4e74f875f
gnu: python-graph-tool: Update to 2.45.
* gnu/packages/graph.scm (python-graph-tool): Update to 2.45.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-08 17:32:15 +02:00
Marius Bakke
acdd0c282f
gnu: python-faiss: Fix build on Python 3.9.
* gnu/packages/graph.scm (python-faiss)[arguments]: Remove "m" suffix to
Python library path.
2022-06-21 17:30:44 +02:00
Tobias Geerinckx-Rice
7b43614986
gnu: python-igraph: Update to 0.9.11.
* gnu/packages/graph.scm (python-igraph): Update to 0.9.11.
2022-06-05 02:00:00 +02:00
Ricardo Wurmus
ca2516f065
gnu: python-leidenalg: Update to 0.8.10.
* gnu/packages/graph.scm (python-leidenalg): Update to 0.8.10.
[arguments]: Patch setup.py.
[native-inputs]: Remove python-setuptools; add python-setuptools-scm.
2022-05-30 23:09:46 +02:00
kiasoc5
5437c90953
gnu: python-plotly: Update to 5.6.0.
* gnu/packages/graph.scm (python-plotly): Update to 5.6.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-23 16:24:46 +02:00
6083372f61
gnu: python-igraph: Update to 0.9.10.
* gnu/packages/graph.scm (python-igraph): Update to 0.9.10.
2022-04-14 22:57:49 +03:00
d6a5bdf000
gnu: igraph: Update to 0.9.8.
* gnu/packages/graph.scm (igraph): Update to 0.9.8.
2022-04-14 22:57:06 +03:00
Ricardo Wurmus
cd4bf5ecb4
gnu: python-louvain-0.6: Update to 0.7.1.
* gnu/packages/graph.scm (python-louvain-0.6): Update to 0.7.1.
[arguments]: Add build phases 'find-igraph and 'pretend-version.
[native-inputs]: Add python-setuptools-scm and python-wheel.
Rename this variable...
(python-louvain-0.7): ...to this, naturally.
* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Update
reference to python-louvain-0.6.
2022-01-31 16:07:39 +01:00
Ricardo Wurmus
90b6b857fd
gnu: python-louvain: Update to 0.16.
* gnu/packages/graph.scm (python-louvain): Update to 0.16.
2022-01-31 16:07:39 +01:00
Marius Bakke
038c65b380
gnu: python-louvain: Build with older setuptools.
* gnu/packages/graph.scm (python-louvain)[native-inputs]: Add
PYTHON-SETUPTOOLS.
2022-01-22 10:23:01 +01:00
Marius Bakke
4d7134c372
gnu: python-igraph: Do not inherit igraph replacements.
...because igraph is built from different source code.

* gnu/packages/graph.scm (python-igraph): Use object inheritance instead of
PACKAGE/INHERIT.
2022-01-18 19:35:56 +01:00
Marius Bakke
38fdd118d0
gnu: python-leidenalg: Fix build failure.
* gnu/packages/graph.scm (python-leidenalg)[arguments]: Add #:phases.
[native-inputs]: Add PYTHON-SETUPTOOLS.
2022-01-18 19:35:55 +01:00
Maxim Cournoyer
87fe15c519
gnu: igraph: Update to 0.9.9.
* gnu/packages/graph.scm (igraph): Update to 0.9.9.
2022-01-18 01:18:13 -05:00
Maxim Cournoyer
5f110be220
gnu: igraph: Update to 0.9.6.
* gnu/packages/graph.scm (igraph): Update to 0.9.6.
[snippet]: Simplify source snippet a bit, leveraging the new support for
using an external plfit library.
2022-01-18 01:15:57 -05:00
Sarah Morgensen
1ba19f4bf1
gnu: python-plotly: Remove obsolete phase.
* gnu/packages/graph.scm (python-plotly)[arguments]<#:phases>: Remove
'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-01-10 11:44:49 -05:00
Maxim Cournoyer
5651e46983
gnu: python-igraph: Update to 0.9.8.
* gnu/packages/graph.scm (python-igraph): Update to 0.9.8.
[origin]: Fetch from git.
[configure-flags]: Delete argument.
[phases]{build}: No longer override phase.
{check}: Preserve ordering and streamline.
{specify-libigraph-location}: New phase.
[native-inputs]: Remove pkg-config.
[home-page]: Update.
2022-01-10 11:44:47 -05:00
Maxim Cournoyer
3c50cb75ee
gnu: igraph: Update to 0.9.5.
* gnu/packages/graph.scm (igraph): Update to 0.9.5.
[source]: Add snippet to fully unbundle.
[build-system]: Use cmake-build-system.
[configure-flags]: Replace all by just '-DBUILD_SHARED_LIBS=ON'.
[native-inputs]: Add pkg-config.
[inputs]{zlib}: Delete input.
{arpack-ng, plfit, suitesparse}: New inputs.
2022-01-10 11:44:47 -05:00
Maxim Cournoyer
36681885d4
gnu: Add plfit.
* gnu/packages/graph.scm (plfit): New variable.
2022-01-10 11:44:46 -05:00
Vagrant Cascadian
820b073a7d
gnu: python-plotly: Fix trailing whitespace in description.
* gnu/packages/graph.scm (python-plotly)[description]: Fix trailing
  whitespace.
2021-12-29 22:48:45 -08:00
Marius Bakke
a133a0288c
gnu: python-graph-tool: Remove input labels.
* gnu/packages/graph.scm (python-graph-tool)[arguments]: Import SITE-PACKAGES
from (guix build python-build-system), and use instead of homegrown procedure.
[native-inputs, inputs]: Remove labels.
2021-12-17 19:07:17 +01:00
Marius Bakke
1d505c05bd
gnu: python-graph-tool: Build with Cairomm 1.14.
* gnu/packages/graph.scm (python-graph-tool)[inputs]: Change from CAIROMM to
CAIROMM-1.14.
2021-12-17 19:07:17 +01:00
Marius Bakke
e661f4eff4
gnu: Remove unneeded uses of custom GCC versions.
* gnu/packages/bioinformatics.scm (libmaus2, biobambam2)[native-inputs]:
Remove GCC-10.
* gnu/packages/game-development.scm (libresprite, python-pyxel)[native-inputs]: Likewise.
* gnu/packages/lua.scm (emilua)[native-inputs]: Likewise.
* gnu/packages/radio.scm (sdr++)[native-inputs]: Likewise.
* gnu/packages/wm.scm (fnott)[native-inputs]: Likewise.
* gnu/packages/text-editors.scm (kakoune)[native-inputs]: Likewise.
(scintilla)[native-inputs]: Remove GCC-9.
* gnu/packages/build-tools.scm (bear)[native-inputs]: Likewise.
* gnu/packages/cpp.scm (magic-enum)[native-inputs]: Likewise.
* gnu/packages/games.scm (openttd)[native-inputs]: Likewise.
(schiffbruch)[native-inputs]: Remove GCC-11.
* gnu/packages/music.scm (liquidsfz, geonkick)[native-inputs]: Remove GCC-9.
* gnu/packages/fcitx5.scm (fcitx5, libime, fcitx5-configtool)[native-inputs]:
Likewise.
* gnu/packages/wine.scm (dxvk32)[native-inputs]: Likewise.
* gnu/packages/ftp.scm (libfilezilla)[native-inputs]: Remove GCC-8.
* gnu/packages/image.scm (blurhash)[native-inputs]: Likewise.
* gnu/packages/jami.scm (libring)[native-inputs]: Likewise.
* gnu/packages/pdf.scm (xournalpp)[native-inputs]: Likewise.
* gnu/packages/telegram.scm (webrtc-for-telegram-desktop,
telegram-desktop)[native-inputs]: Likewise.
2021-12-17 19:07:17 +01:00
Ludovic Courtès
8394619bac
gnu: Simplify package inputs.
This commit was obtained by running:

  ./pre-inst-env guix style

without any additional argument.
2021-12-13 17:48:25 +01:00
541066a02f
gnu: python-graph-tool: Sort inputs alphabetically.
* gnu/packages/graph.scm (python-graph-tool)[native-inputs]: Sort
alphabetically.
[inputs]: Same.
[propagated-inputs]: Same.
2021-07-20 12:01:20 +03:00
Alexandre Hannud Abdo
ac840442ee
gnu: python-graph-tool: Update to 2.43.
* gnu/packages/graph.scm (python-graph-tool): Update to 2.43.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-07-20 11:59:54 +03:00
zimoun
24c7e0497d
gnu: python2-plotly: Remove package.
* gnu/packages/graph.scm (python2-plotly): Remove variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-29 12:37:32 +02:00
Alexandre Hannud Abdo
5b359e4ba5
gnu: Add python-graph-tool.
* gnu/packages/graph.scm (python-graph-tool): New variable.

Signed-off-by: Marius Bakke <marius@gnu.org>
2021-05-15 19:18:46 +02:00
Vinicius Monego
76fb1a5cf2
gnu: Add python-louvain 0.15.
* gnu/packages/graph.scm (python-louvain): Rename variable to
python-louvain-0.6.
(python-louvain): New variable.
* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Use
python-louvain-0.6.

Co-authored-by: Leo Famulari <leo@famulari.name>
2021-04-25 14:49:57 -04:00
e9096ef105
gnu: python-plotly: Allow test phase to be skipped.
* gnu/packages/graph.scm (python-plotly)[arguments]: Wrap custom 'check
phase tests with test with tests? keyword.
2021-03-04 14:48:43 +02:00
3e5d811387
gnu: python-plotly: Update to 4.14.3.
* gnu/packages/graph.scm (python-plotly): Update to 4.14.3.
[propagated-inputs]: Remove python-decorator. Add python-ipython,
python-pillow. Move python-ipywidgets, python-xarray ...
[native-inputs]: ... to here.
2021-03-04 14:48:43 +02:00
Tobias Geerinckx-Rice
4491c624dd
gnu: igraph: Omit static library.
* gnu/packages/graph.scm (igraph)[arguments]: Add "--disable-static"
to #:configure-flags.
2020-11-26 04:22:50 +01:00
Tobias Geerinckx-Rice
13e55e6eeb
gnu: igraph: Update to 0.8.4.
* gnu/packages/graph.scm (igraph): Update to 0.8.4.
2020-11-26 04:22:50 +01:00
zimoun
b3a998374c
gnu: r-rgraphviz: Move to (gnu packages bioconductor).
* gnu/packages/graph.scm (r-rgraphviz): Move from here...
* gnu/packages/bioconductor.scm (r-rgraphviz): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14 21:39:16 +02:00
Ricardo Wurmus
62881beb4d
gnu: r-rgraphviz: Build reproducibly.
Fixes <https://bugs.gnu.org/43398>.

* gnu/packages/graph.scm (r-rgraphviz)[arguments]: Add phase
"make-reproducible".
2020-09-14 21:25:17 +02:00
zimoun
c23ff34423
gnu: r-igraph: Move to (gnu packages cran).
* gnu/packages/graph.scm (r-igraph): Move from here...
* gnu/packages/cran.scm (r-igraph): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:58:55 +02:00
zimoun
1dc50e4190
gnu: r-diffusionmap: Move to (gnu packages cran).
* gnu/packages/graph.scm (r-diffusionmap): Move from here...
* gnu/packages/cran.scm (r-diffusionmap): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-11 21:58:49 +02:00