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* gnu/packages/bioinformatics.scm (khmer): New variable. * gnu/packages/patches/khmer-use-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
16 lines
545 B
Diff
16 lines
545 B
Diff
Change setup.cfg so that the bundled zlib and bzip2 are not used. This cannot
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currently be achieved using "--library z,bz2" as instructed in the setup.py.
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diff --git a/setup.cfg b/setup.cfg
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index c054092..080992e 100644
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--- a/setup.cfg
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+++ b/setup.cfg
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@@ -1,7 +1,7 @@
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[build_ext]
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define = SEQAN_HAS_BZIP2,SEQAN_HAS_ZLIB
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undef = NO_UNIQUE_RC
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-# libraries = z,bz2
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+libraries = z,bz2
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## if using system libraries
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include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include:third-party/smhasher
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# include-dirs = lib
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