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* gnu/packages/chemistry.scm (gromacs): New variable. * gnu/packages/patches/gromacs-tinyxml2.patch: New file... * gnu/local.mk (dist_patch_DATA): ...add it here. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
67 lines
2.6 KiB
Diff
67 lines
2.6 KiB
Diff
Unbundling tinyxml2 from gromacs and using our own, which is newer, broke gromacs
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build.
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This patch fixes three issues:
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- cmake now errors out if using multiple target_link_libraries with mixed styles
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of signatures.
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- Error handling API changed, fix the testutils/refdata_xml.cpp code by using the
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new API: document.ErrorStr() & tinyxml2::XML_SUCCESS.
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Those fixes will be submitted for inclusion to upstream, but may not be suitable
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there as long as they still keep the old version bundled.
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First hunk has already been requested for merging. Third is in discussion. Second
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will only be sent if third is OK'ed.
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diff -ruN gromacs-2020.2/src/testutils/CMakeLists.txt gromacs-2020.2-fixed/src/testutils/CMakeLists.txt
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--- gromacs-2020.2/src/testutils/CMakeLists.txt 2020-04-30 18:33:44.000000000 +0200
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+++ gromacs-2020.2-fixed/src/testutils/CMakeLists.txt 2020-05-01 22:52:16.356000000 +0200
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@@ -73,7 +73,7 @@
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if(HAVE_TINYXML2)
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include_directories(SYSTEM ${TinyXML2_INCLUDE_DIR})
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- target_link_libraries(testutils ${TinyXML2_LIBRARIES})
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+ target_link_libraries(testutils PRIVATE ${TinyXML2_LIBRARIES})
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else()
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include_directories(BEFORE SYSTEM "../external/tinyxml2")
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endif()
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diff -ruN gromacs-2020.2/src/testutils/refdata_xml.cpp gromacs-2020.2-fixed/src/testutils/refdata_xml.cpp
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--- gromacs-2020.2/src/testutils/refdata_xml.cpp 2020-04-30 18:33:44.000000000 +0200
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+++ gromacs-2020.2-fixed/src/testutils/refdata_xml.cpp 2020-05-01 23:17:09.556000000 +0200
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@@ -206,21 +206,12 @@
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document.LoadFile(path.c_str());
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if (document.Error())
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{
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- const char* errorStr1 = document.GetErrorStr1();
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- const char* errorStr2 = document.GetErrorStr2();
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+ const char* errorStr = document.ErrorStr();
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std::string errorString("Error was ");
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- if (errorStr1)
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- {
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- errorString += errorStr1;
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- }
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- if (errorStr2)
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- {
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- errorString += errorStr2;
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- }
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- if (!errorStr1 && !errorStr2)
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- {
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+ if (errorStr)
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+ errorString += errorStr;
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+ else
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errorString += "not specified.";
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- }
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GMX_THROW(TestException("Reference data not parsed successfully: " + path + "\n."
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+ errorString + "\n"));
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}
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@@ -371,7 +362,7 @@
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XMLElementPtr rootElement = createRootElement(&document);
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createChildElements(rootElement, rootEntry);
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- if (document.SaveFile(path.c_str()) != tinyxml2::XML_NO_ERROR)
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+ if (document.SaveFile(path.c_str()) != tinyxml2::XML_SUCCESS)
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{
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GMX_THROW(TestException("Reference data saving failed in " + path));
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}
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