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6161141e91
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file. * gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove extraneous 'use-modules' in snippet. [build-system]: Change to cmake-build-system. [propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ... [inputs]: ...here. Add openblas and combinatorial-blas. [arguments]: Replace 'configure' phase with #:configure-flags. Add 'set-c++-standard' and 'omp-setup' phases. Remove 'create-install-directories, 'check', and 'install' phases, which are now handled by cmake. * gnu/local.mk (dist_patch_DATA): Add patch.
36 lines
1.6 KiB
Diff
36 lines
1.6 KiB
Diff
Create the CombBLAS::SpParMat with the MPI_Comm from the input 'gridinfo_t'.
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This prevents a warning/error from CombBLAS about using MPI_COMM_WORLD.
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--- a/SRC/AWPM_CombBLAS.hpp
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+++ b/SRC/AWPM_CombBLAS.hpp
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@@ -52,7 +52,7 @@
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{
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printf("AWPM only supports square process grid. Retuning without a permutation.\n");
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}
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- combblas::SpParMat < int_t, double, combblas::SpDCCols<int_t,double> > Adcsc;
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+ combblas::SpParMat < int_t, double, combblas::SpDCCols<int_t,double> > Adcsc(grid->comm);
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std::vector< std::vector < std::tuple<int_t,int_t,double> > > data(procs);
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/* ------------------------------------------------------------
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@@ -100,11 +100,10 @@
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combblas::AWPM(Adcsc, mateRow2Col, mateCol2Row,true);
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// now gather the matching vector
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- MPI_Comm World = mateRow2Col.getcommgrid()->GetWorld();
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int * rdispls = new int[procs];
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int sendcnt = mateRow2Col.LocArrSize();
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int * recvcnt = new int[procs];
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- MPI_Allgather(&sendcnt, 1, MPI_INT, recvcnt, 1, MPI_INT, World);
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+ MPI_Allgather(&sendcnt, 1, MPI_INT, recvcnt, 1, MPI_INT, grid->comm);
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rdispls[0] = 0;
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for(int i=0; i<procs-1; ++i)
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{
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@@ -112,7 +111,7 @@
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}
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int_t *senddata = (int_t *)mateRow2Col.GetLocArr();
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- MPI_Allgatherv(senddata, sendcnt, combblas::MPIType<int_t>(), ScalePermstruct->perm_r, recvcnt, rdispls, combblas::MPIType<int_t>(), World);
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+ MPI_Allgatherv(senddata, sendcnt, combblas::MPIType<int_t>(), ScalePermstruct->perm_r, recvcnt, rdispls, combblas::MPIType<int_t>(), grid->comm);
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delete[] rdispls;
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delete[] recvcnt;
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