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guix/gnu/packages/patches/khmer-use-libraries.patch
Ben Woodcroft 94ff31572d
gnu: Add khmer.
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-06-27 21:35:16 +10:00

16 lines
545 B
Diff

Change setup.cfg so that the bundled zlib and bzip2 are not used. This cannot
currently be achieved using "--library z,bz2" as instructed in the setup.py.
diff --git a/setup.cfg b/setup.cfg
index c054092..080992e 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,7 +1,7 @@
[build_ext]
define = SEQAN_HAS_BZIP2,SEQAN_HAS_ZLIB
undef = NO_UNIQUE_RC
-# libraries = z,bz2
+libraries = z,bz2
## if using system libraries
include-dirs = lib:third-party/zlib:third-party/bzip2:third-party/seqan/core/include:third-party/smhasher
# include-dirs = lib