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guix/gnu/packages/astronomy.scm
Sharlatan Hellseher 594f5ef351
gnu: Add alfa. 
* gnu/packages/astronomy.scm (alfa): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-02 00:02:12 +01:00

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;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2016 John Darrington <jmd@gnu.org>
;;; Copyright © 2018–2022 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018, 2019, 2020, 2021, 2022 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2019 by Amar Singh <nly@disroot.org>
;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in>
;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net>
;;; Copyright © 2021, 2022 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2021, 2022 Vinicius Monego <monego@posteo.net>
;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages astronomy)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages algebra)
#:use-module (gnu packages autotools)
#:use-module (gnu packages base)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
#:use-module (gnu packages check)
#:use-module (gnu packages cmake)
#:use-module (gnu packages compression)
#:use-module (gnu packages curl)
#:use-module (gnu packages databases)
#:use-module (gnu packages flex)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gettext)
#:use-module (gnu packages gl)
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
#:use-module (gnu packages gtk)
#:use-module (gnu packages image)
#:use-module (gnu packages image-processing)
#:use-module (gnu packages libusb)
#:use-module (gnu packages lua)
#:use-module (gnu packages maths)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages netpbm)
#:use-module (gnu packages perl)
#:use-module (gnu packages photo)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pretty-print)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-compression)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
#:use-module (gnu packages readline)
#:use-module (gnu packages textutils)
#:use-module (gnu packages time)
#:use-module (gnu packages version-control)
#:use-module (gnu packages video)
#:use-module (gnu packages wxwidgets)
#:use-module (gnu packages xiph)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (gnu packages)
#:use-module (guix build-system cmake)
#:use-module (guix build-system copy)
#:use-module (guix build-system gnu)
#:use-module (guix build-system meson)
#:use-module (guix build-system python)
#:use-module (guix build-system pyproject)
#:use-module (guix download)
#:use-module (guix gexp)
#:use-module (guix git-download)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (ice-9 match)
#:use-module (srfi srfi-1))
(define-public alfa
(package
(name "alfa")
(version "2.2")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/rwesson/ALFA")
(commit (string-append "v" version))))
(sha256
(base32
"0aqxqar36822mh373awsl79j7zn8vik4yddyydsxv0c76gn4i2k3"))
(file-name (git-file-name name version))))
(build-system gnu-build-system)
(arguments
(list #:parallel-build? #f
#:make-flags #~(list (string-append "PREFIX="
#$output)
(string-append "VERSION="
#$version))
#:phases #~(modify-phases %standard-phases
(delete 'configure)
(delete 'check)
(add-after 'install 'post-install-check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "make" "fittest")))))))
(inputs (list cfitsio gfortran))
(home-page "https://nebulousresearch.org/codes/alfa/")
(synopsis "Automated line fitting algorithm")
(description
"This package provides @acronym{ALFA, Automatic line fitting algorithm},
which can identify and fit hundreds of lines in emission line spectra in just a
few seconds with following features:
@itemize
@item A population of synthetic spectra is generated using a reference line
catalogue.
@item The goodness of fit for each synthetic spectrum is calculated. The best
sets of parameters are retained and the rest discarded.
@item A new population of synthetic spectra is obtained by averaging pairs of
the best performers.
@item A small fraction of the parameters of the lines in the new generation are
randomly altered.
@item The process repeats until a good fit is obtained.
@end itemize")
(license license:gpl3)))
(define-public aocommon
(let ((commit "7329a075271edab8f6264db649e81e62b2b6ae5e")
(revision "1"))
(package
(name "aocommon")
(version (git-version "0.0.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.com/aroffringa/aocommon")
(commit commit)))
(sha256
(base32 "0qcfax6pbzs0yigy0x8xibrkk539wm2pbvjsb4lh50fybir02nix"))
(file-name (git-file-name name version))))
(build-system copy-build-system)
(arguments
(list #:install-plan
#~'(("include/aocommon" "include/aocommon"))))
(home-page "https://gitlab.com/aroffringa/aocommon")
(synopsis "Collection of functionality that is reused in astronomical applications")
(description
"This package provides source-only AOCommon collection of functionality that is
reused in several astronomical applications, such as @code{wsclean},
@code{aoflagger}, @code{DP3} and @code{everybeam}.")
(license license:gpl3+))))
(define-public calceph
(package
(name "calceph")
(version "3.5.1")
(source
(origin
(method url-fetch)
(uri (string-append
"https://www.imcce.fr/content/medias/recherche/equipes/asd/calceph/calceph-"
version ".tar.gz"))
(sha256
(base32 "078wn773pwf4pg9m0h0l00g4aq744pq1rb6kz6plgdpzp3hhpk1k"))))
(build-system gnu-build-system)
(native-inputs
(list gfortran))
(home-page "https://www.imcce.fr/inpop/calceph")
(properties `((release-monitoring-url . ,home-page)))
(synopsis "Astronomical library to access the binary planetary ephemeris files")
(description
"The CALCEPH Library is designed to access the binary planetary ephemeris files,
such INPOPxx and JPL DExxx ephemeris files, (called @code{original JPL binary} or
@code{INPOP 2.0 or 3.0 binary} ephemeris files in the next sections) and the SPICE
kernel files (called @code{SPICE} ephemeris files in the next sections). At the
moment, supported SPICE files are:
@itemize
@item text Planetary Constants Kernel (KPL/PCK) files;
@item binary PCK (DAF/PCK) files;
@item binary SPK (DAF/SPK) files containing segments of type 1, 2, 3, 5, 8, 9,
12, 13, 17, 18, 19, 20, 21, 102, 103 and 120;
@item meta kernel (KPL/MK) files;
@item frame kernel (KPL/FK) files (only basic support).
@end itemize\n")
(license license:cecill)))
(define-public aoflagger
(package
(name "aoflagger")
(version "3.2.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.com/aroffringa/aoflagger")
(commit (string-append "v" version))))
(sha256
(base32 "1dcbfrbiybhpbypna2xhddx1wk7yifh38ha2r6p5rzsikzwlsin1"))
(patches
(search-patches "aoflagger-use-system-provided-pybind11.patch"))
(file-name (git-file-name name version))))
(build-system cmake-build-system)
(arguments
(list
;; XXX: Tests require external files download from
;; https://www.astron.nl/citt/ci_data/aoflagger/
;; FIXME: runtest is not found
#:tests? #f
#:configure-flags
#~(list (string-append "-DCASACORE_ROOT_DIR="
#$(this-package-input "casacore")))
#:phases
#~(modify-phases %standard-phases
;; aocommon and pybind11 are expected to be found as git submodules,
;; link them before build.
(add-after 'unpack 'link-submodule-package
(lambda _
(rmdir "external/aocommon")
(symlink #$(this-package-native-input "aocommon")
(string-append (getcwd) "/external/aocommon")))))))
(native-inputs
(list aocommon
boost
pkg-config
python
pybind11))
(inputs
(list casacore
cfitsio
fftw
gsl
gtkmm-3
hdf5
lapack
libpng
libsigc++
libxml2
lua
openblas
zlib))
(home-page "https://gitlab.com/aroffringa/aoflagger")
(synopsis "Astronomical tool that can find and remove radio-frequency interference")
(description
"AOFlagger is a tool that can find and remove radio-frequency
interference (RFI) in radio astronomical observations. It can make use of Lua
scripts to make flagging strategies flexible, and the tools are applicable to a
wide set of telescopes.")
(license license:gpl3+)))
(define-public casacore
(package
(name "casacore")
(version "3.4.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/casacore/casacore")
(commit (string-append "v" version))))
(sha256
(base32
"05ar5gykgh4dm826xplj5ri5rw7znhxrvin2l67a3mjwfys7r2a0"))
(file-name (git-file-name name version))))
(build-system cmake-build-system)
(arguments
(list
;; Note: There are multiple failures in
;; tests which require additional measures data. They are
;; distributed via FTP without any license:
;; ftp://ftp.astron.nl/outgoing/Measures/
;; TODO: Check how to fix tests.
#:tests? #f
#:parallel-build? #t
#:configure-flags
#~(list "-DBUILD_PYTHON3=ON"
"-DBUILD_PYTHON=OFF"
"-DBUILD_TESTING=TRUE"
"-DUSE_HDF5=ON"
"-DUSE_OPENMP=OFF"
"-DUSE_THREADS=ON"
(string-append "-DDATA_DIR=" #$output "/data")
(string-append "-DPYTHON3_EXECUTABLE="
#$(this-package-input "python") "/bin")
(string-append "-DPYTHON3_INCLUDE_DIR="
#$(this-package-input "python") "/include")
(string-append "-DPYTHON3_LIBRARY="
#$(this-package-input "python") "/lib"))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'set-env
(lambda _
(setenv "HOME" "/tmp")))
(add-after 'unpack 'use-absolute-rm
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "casa/OS/test/tFile.run"
(("/bin/rm")
(search-input-file inputs "/bin/rm")))))
(add-after 'unpack 'use-absolute-python3
(lambda _
(substitute* "build-tools/casacore_floatcheck"
(("#!/usr/bin/env python")
(string-append "#!" (which "python3"))))))
;; NOTE: (Sharlatan-20220611T200837+0100): Workaround for casacore
;; tests stuck with missing "qsub" issue.
;; https://github.com/casacore/casacore/issues/1122
(add-after 'unpack 'patch-pre-test-checks
(lambda _
(substitute* "build-tools/casacore_assay"
(("QSUBP=.*$") "QSUBP=\n")
(("YODP=.*$") "YODP=\n")))))))
(native-inputs
(list bison
boost
flex
readline))
(inputs
(list cfitsio
fftw
fftwf
gfortran
hdf5
lapack
ncurses
openblas
python
python-numpy
wcslib))
(home-page "http://casacore.github.io/casacore/")
(synopsis "Suite of C++ libraries for radio astronomy data processing")
(description
"The casacore package contains the core libraries of the old
AIPS++/CASA (Common Astronomy Software Application) package. This split was
made to get a better separation of core libraries and applications.
@url{https://casa.nrao.edu/, CASA} is now built on top of Casacore.")
(license license:gpl2+)))
(define-public cfitsio
(package
(name "cfitsio")
(version "3.49")
(source
(origin
(method url-fetch)
(uri (string-append
"http://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
"cfitsio-" version ".tar.gz"))
(sha256
(base32 "1cyl1qksnkl3cq1fzl4dmjvkd6329b57y9iqyv44wjakbh6s4rav"))))
(build-system gnu-build-system)
;; XXX Building with curl currently breaks wcslib. It doesn't use
;; pkg-config and hence won't link with -lcurl.
(arguments
`(#:tests? #f ; no tests
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-paths
(lambda _
(substitute* "Makefile.in" (("/bin/") ""))
#t)))))
(home-page "https://heasarc.gsfc.nasa.gov/fitsio/fitsio.html")
(synopsis "Library for reading and writing FITS files")
(description "CFITSIO provides simple high-level routines for reading and
writing @dfn{FITS} (Flexible Image Transport System) files that insulate the
programmer from the internal complexities of the FITS format. CFITSIO also
provides many advanced features for manipulating and filtering the information
in FITS files.")
(license (license:non-copyleft "file://License.txt"
"See License.txt in the distribution."))))
(define-public python-fitsio
(package
(name "python-fitsio")
(version "1.1.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "fitsio" version))
(sha256
(base32 "0q8siijys9kmjnqvyipjgh6hkhf4fwvr1swhsf4if211i9b0m1xy"))
(modules '((guix build utils)))
(snippet
;; Remove the bundled cfitsio
`(begin
(delete-file-recursively "cfitsio3490")
(substitute* "MANIFEST.in"
(("recursive-include cfitsio3490.*$\n") ""))))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'unbundle-cfitsio
(lambda* (#:key inputs #:allow-other-keys)
(let* ((cfitsio (assoc-ref inputs "cfitsio"))
(includedir (string-append "\"" cfitsio "/include\""))
(libdir (string-append "\"" cfitsio "/lib\"")))
;; Use Guix' cfitsio instead of the bundled one
(substitute* "setup.py"
(("self.use_system_fitsio = False") "pass")
(("self.system_fitsio_includedir = None") "pass")
(("self.system_fitsio_libdir = None") "pass")
(("self.use_system_fitsio") "True")
(("self.system_fitsio_includedir") includedir)
(("self.system_fitsio_libdir") libdir)))))
(add-after 'unpack 'skip-bzip2-test
(lambda* (#:key inputs #:allow-other-keys)
;; The bzip2 test fails because Guix' cfitsio
;; is built without bzip2 support.
(substitute* "fitsio/test.py"
(("'SKIP_BZIP_TEST' in os.environ") "True")))))))
(propagated-inputs
(list python-numpy cfitsio))
(home-page "https://github.com/esheldon/fitsio")
(synopsis
"Python library to read from and write to FITS files")
(description
"This package provides a Python library for reading from and writing
to @acronym{FITS, Flexible Image Transport System} files using the
CFITSIO library. Among other things, it can
@itemize
@item read and write image, binary, and ascii table extensions;
@item read arbitrary subsets of tables in a lazy manner;
@item query the rows and columns of a table;
@item read and write header keywords;
@item read and write Gzip files.
@end itemize")
(license license:gpl2+)))
(define-public qfits
(package
(name "qfits")
(version "6.2.0")
(source
(origin
(method url-fetch)
(uri
(string-append "ftp://ftp.eso.org/pub/qfits/qfits-" version ".tar.gz"))
(sha256
(base32 "0m2b21mim3a7wgfg3ph2w5hv7mdvr03jmmhzipc0wcahijglcw9j"))))
(build-system gnu-build-system)
(home-page "https://www.eso.org/sci/software/eclipse/qfits/")
(synopsis "C library offering access to astronomical FITS files")
(description
"@code{qfits} is a C library giving access to FITS file internals, both
for reading and writing.")
(license license:gpl2+)))
(define-public erfa
(package
(name "erfa")
(version "2.0.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/liberfa/erfa")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0s9dpj0jdkqcg552f00jhd722czji4pffabmpys5pgi6djckq4f4"))))
(build-system gnu-build-system)
(native-inputs
(list automake autoconf libtool pkg-config))
(home-page "https://github.com/liberfa/erfa")
(synopsis "Essential Routines for Fundamental Astronomy")
(description
"The @acronym{ERFA, Essential Routines for Fundamental Astronomy} C library
contains key algorithms for astronomy, and is based on the @acronym{SOFA,
Standards of Fundamental Astronomy} library published by the @acronym{IAU,
International Astronomical Union}.")
(license license:bsd-3)))
(define-public eye
(package
(name "eye")
(version "1.4.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.astromatic.net/download/eye/"
"eye-" version ".tar.gz"))
(sha256
(base32 "092qhzcbrkcfidbx4bv9wz42w297n80jk7a6kwyi9a3fjfz81d7k"))))
(build-system gnu-build-system)
(home-page "https://www.astromatic.net/software/eye")
(synopsis "Small image feature detector using machine learning")
(description
"In EyE (Enhance Your Extraction) an artificial neural network connected to
pixels of a moving window (retina) is trained to associate these input stimuli
to the corresponding response in one or several output image(s). The resulting
filter can be loaded in SExtractor to operate complex, wildly non-linear filters
on astronomical images. Typical applications of EyE include adaptive filtering,
feature detection and cosmetic corrections.")
(license license:cecill)))
(define-public wcslib
(package
(name "wcslib")
(version "7.5")
(source
(origin
(method url-fetch)
(uri (string-append
"ftp://ftp.atnf.csiro.au/pub/software/wcslib/wcslib-" version
".tar.bz2"))
(sha256
(base32 "1536gmcpm6pckn9xrb6j8s4pm1vryjhzvhfaj9wx3jwxcpbdy0dw"))))
(inputs
(list cfitsio))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
(list (string-append "--with-cfitsiolib="
(assoc-ref %build-inputs "cfitsio") "/lib")
(string-append "--with-cfitsioinc="
(assoc-ref %build-inputs "cfitsio") "/include"))
#:phases
(modify-phases %standard-phases
(add-before 'configure 'patch-/bin/sh
(lambda _
(substitute* "makedefs.in"
(("/bin/sh") "sh"))
#t))
(delete 'install-license-files)) ; installed by ‘make install’
;; Parallel execution of the test suite is not supported.
#:parallel-tests? #f))
(home-page "https://www.atnf.csiro.au/people/mcalabre/WCS")
(synopsis "Library which implements the FITS WCS standard")
(description "The FITS \"World Coordinate System\" (@dfn{WCS}) standard
defines keywords and usage that provide for the description of astronomical
coordinate systems in a @dfn{FITS} (Flexible Image Transport System) image
header.")
(license license:lgpl3+)))
(define-public weightwatcher
(package
(name "weightwatcher")
(version "1.12")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.astromatic.net/download/weightwatcher/"
"weightwatcher-" version ".tar.gz"))
(sha256
(base32 "1zaqd8d9rpgcwjsp92q3lkfaa22i20gppb91dz34ym54swisjc2p"))))
(build-system gnu-build-system)
(home-page "https://www.astromatic.net/software/weightwatcher")
(synopsis "Weight-map/flag-map multiplexer and rasteriser")
(description
"Weightwatcher is a program hat combines weight-maps, flag-maps and
polygon data in order to produce control maps which can directly be used in
astronomical image-processing packages like Drizzle, Swarp or SExtractor.")
(license license:gpl3+)))
(define-public gnuastro
(package
(name "gnuastro")
(version "0.19")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://gnu/gnuastro/gnuastro-"
version ".tar.lz"))
(sha256
(base32
"192q3i4zlfmwfcchlf9lnpfgys9dssh7npr5qx0gzn3d2fri0xbz"))))
(build-system gnu-build-system)
(arguments
'(#:configure-flags '("--disable-static")))
(inputs
(list cfitsio
curl-minimal
gsl
libgit2
libjpeg-turbo
libtiff
wcslib
zlib))
(native-inputs
(list libtool lzip))
(home-page "https://www.gnu.org/software/gnuastro/")
(synopsis "Astronomy utilities")
(description "The GNU Astronomy Utilities (Gnuastro) is a suite of
programs for the manipulation and analysis of astronomical data.")
(license license:gpl3+)))
(define-public sextractor
(package
(name "sextractor")
(version "2.25.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/astromatic/sextractor")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32 "0q69n3nyal57h3ik2xirwzrxzljrwy9ivwraxzv9566vi3n4z5mw"))))
(build-system gnu-build-system)
;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing
;; due to missing shared library which required on configure phase. Switch
;; build to use `openblas' instead. It requires FFTW with single precision
;; `fftwf'.
(arguments
`(#:configure-flags
(list
"--enable-openblas"
(string-append
"--with-openblas-libdir=" (assoc-ref %build-inputs "openblas") "/lib")
(string-append
"--with-openblas-incdir=" (assoc-ref %build-inputs "openblas") "/include")
(string-append
"--with-fftw-libdir=" (assoc-ref %build-inputs "fftw") "/lib")
(string-append
"--with-fftw-incdir=" (assoc-ref %build-inputs "fftw") "/include"))))
(native-inputs
(list autoconf automake libtool))
(inputs
`(("openblas" ,openblas)
("fftw" ,fftwf)))
(home-page "http://www.astromatic.net/software/sextractor")
(synopsis "Extract catalogs of sources from astronomical images")
(description
"SExtractor is a program that builds a catalogue of objects from an
astronomical image. Although it is particularly oriented towards reduction of
large scale galaxy-survey data, it can perform reasonably well on moderately
crowded star fields.")
(license license:gpl3+)))
(define-public siril
(package
(name "siril")
(version "1.0.6")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.com/free-astro/siril")
(commit version)))
(sha256
(base32
"0iqxb5zmjyygg4b6lwlq8z82mngxg7kjjpahhzk52m0cypfq0l18"))
(file-name (git-file-name name version))))
(build-system meson-build-system)
(native-inputs (list cmake git glib libconfig pkg-config))
(inputs (list cfitsio
exiv2
fftwf
gsl
gtk+
json-glib
libraw
librtprocess
opencv))
(home-page "https://siril.org/")
(synopsis "Image processing software for amateur astronomy")
(description
"This package provides an astronomical image processing tool - SIRIL. It is
specially tailored for noise reduction and improving the signal/noise ratio of
an image from multiple captures, as required in astronomy. SIRIL can align
automatically or manually, stack and enhance pictures from various file formats,
even image sequence files (films and SER files). It works well with limited
system resources, like in embedded platforms, but is also very fast when run on
more powerful computers and provides conversion to FITS from a large number of
image formats.")
(license license:gpl3+)))
(define-public splash
(package
(name "splash")
(version "3.5.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/danieljprice/splash")
(commit (string-append "v" version))))
(sha256
(base32
"12s3w96wzd4zpxw4adzhalkr57fgdk7cjp6bj596jnd87pz3rhyd"))
(file-name (git-file-name name version))))
(build-system gnu-build-system)
(arguments
;; FIXME: Tests failed
;; Issue submited upstream https://github.com/danieljprice/splash/issues/67
;;
;; make: *** No rule to make target 'test_interpolate3D.o', needed by 'test1'. Stop.
;;
(list #:tests? #f
#:parallel-build? #f ;parallel build fails
#:make-flags #~(list "SYSTEM=gfortran" "PREFIX="
(string-append "GIZA_DIR="
#$(this-package-input "giza"))
(string-append "DESTDIR="
#$output))
#:phases #~(modify-phases %standard-phases
(delete 'configure)
(add-before 'install 'create-install-dirrectories
(lambda _
(mkdir-p (string-append #$output "/bin")))))))
(native-inputs (list gfortran pkg-config perl python-wrapper))
(inputs (list cairo cfitsio giza))
(home-page "https://users.monash.edu.au/~dprice/splash/")
(synopsis
"Astrophysical visualisation tool for smoothed particle hydrodynamics")
(description
"SPLASH is visualisation tool for Smoothed Particle Hydrodynamics (SPH)
simulations in one, two and three dimensions, developed mainly for
astrophysics. It uses a command-line menu but data can be manipulated
interactively in the plotting window.")
(license license:gpl2+)))
(define-public skymaker
(package
(name "skymaker")
(version "3.10.5")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.astromatic.net/download/skymaker/"
"skymaker-" version ".tar.gz"))
(sha256
(base32 "03zvx7c89plp9559niqv5532r233kza3ir992rg3nxjksqmrqvx1"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
(list
(string-append
"--with-fftw-libdir=" (assoc-ref %build-inputs "fftw") "/lib")
(string-append
"--with-fftw-incdir=" (assoc-ref %build-inputs "fftw") "/include"))))
(inputs
`(("fftw" ,fftwf)))
(home-page "https://www.astromatic.net/software/skymaker")
(synopsis "Astronomical image simulator")
(description
"SkyMaker is a program that simulates astronomical images. It accepts
object lists in ASCII generated by the Stuff program to produce realistic
astronomical fields. SkyMaker is part of the EFIGI
(@url{https://www.astromatic.net/projects/efigi}) development project.")
(license license:gpl3+)))
(define-public stackistry
(package
(name "stackistry")
(version "0.3.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/GreatAttractor/stackistry")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0rz29v33n0x0k40hv3v79ym5ylch1v0pbph4i21809gz2al5p7dq"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags
(list
(string-append
"SKRY_INCLUDE_PATH=" (assoc-ref %build-inputs "libskry") "/include")
(string-append
"SKRY_LIB_PATH=-L" (assoc-ref %build-inputs "libskry") "/lib")
(string-append
"LIBAV_INCLUDE_PATH=" (assoc-ref %build-inputs "ffmpeg") "/include"))
#:phases
(modify-phases %standard-phases
;; no configure and tests are provided
(delete 'configure)
(delete 'check)
(add-after 'unpack 'fix-paths
(lambda* (#:key outputs #:allow-other-keys)
(substitute* "src/main.cpp"
(("\"\\.\\.\", \"lang\"")
"\"../share/stackistry\", \"lang\""))
(substitute* "src/utils.cpp"
(("\"\\.\\.\", \"icons\"")
"\"../share/stackistry\", \"icons\""))
#t))
(replace 'install
;; The Makefile lacks an ‘install’ target.
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(icons (string-append out "/share/stackistry/icons"))
(lang (string-append out "/share/stackistry/lang")))
(copy-recursively "bin" bin)
(copy-recursively "icons" icons)
(copy-recursively "lang" lang))
#t)))))
(native-inputs
(list pkg-config))
(inputs
(list gtkmm-3 libskry ffmpeg))
(home-page "https://github.com/GreatAttractor/stackistry")
(synopsis "Astronomical lucky imaging/image stacking tool")
(description
"Stackistry implements the lucky imaging principle of astronomical
imaging: creating a high-quality still image out of a series of many (possibly
thousands) low quality ones (blurred, deformed, noisy). The resulting image
stack typically requires post-processing, including sharpening (e.g. via
deconvolution). Such post-processing is not performed by Stackistry.")
(license license:gpl3+)))
(define-public stellarium
(package
(name "stellarium")
(version "0.21.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/Stellarium/stellarium"
"/releases/download/v" version
"/stellarium-" version ".tar.gz"))
(sha256
(base32 "049jlc8vx06pad5h2syrmf7f1l346yr5iraai0wkn8s8pk30j8q7"))))
(build-system cmake-build-system)
(inputs
(list qtbase-5
qtlocation
qtmultimedia-5
qtscript
qtserialport
zlib))
(native-inputs
`(("gettext" ,gettext-minimal) ; xgettext is used at compile time
("perl" ,perl) ; for pod2man
("qtbase" ,qtbase-5) ; Qt MOC is needed at compile time
("qttools-5" ,qttools-5)))
(arguments
`(#:test-target "test"
#:configure-flags (list "-DENABLE_TESTING=1"
(string-append
"-DCMAKE_CXX_FLAGS=-isystem "
(assoc-ref %build-inputs "qtserialport")
"/include/qt5"))
#:phases (modify-phases %standard-phases
(add-before 'check 'set-offscreen-display
(lambda _
;; Make Qt render "offscreen", required for tests.
(setenv "QT_QPA_PLATFORM" "offscreen")
(setenv "HOME" "/tmp")
#t)))))
(home-page "https://stellarium.org/")
(synopsis "3D sky viewer")
(description "Stellarium is a planetarium. It shows a realistic sky in
3D, just like what you see with the naked eye, binoculars, or a telescope. It
can be used to control telescopes over a serial port for tracking celestial
objects.")
(license license:gpl2+)))
(define-public stuff
(package
(name "stuff")
(version "1.26.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.astromatic.net/download/stuff/"
"stuff-" version ".tar.gz"))
(sha256
(base32 "1syibi3b86z9pikhicvkkmgxm916j732fdiw0agw0lq6z13fdcjm"))))
(build-system gnu-build-system)
(home-page "https://www.astromatic.net/software/stuff")
(synopsis "Astronomical catalogue simulation")
(description
"Stuff is a program that simulates \"perfect\" astronomical catalogues.
It generates object lists in ASCII which can read by the SkyMaker program to
produce realistic astronomical fields. Stuff is part of the EFIGI development
project.")
(license license:gpl3+)))
(define-public swarp
(package
(name "swarp")
(version "2.38.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.astromatic.net/download/swarp/"
"swarp-" version ".tar.gz"))
(sha256
(base32 "1i670waqp54vin1cn08mqckcggm9zqd69nk7yya2vvqpdizn6jpm"))))
(build-system gnu-build-system)
(home-page "https://www.astromatic.net/software/swarp")
(synopsis "FITS image resampling and co-addition")
(description
"SWarp is a program that resamples and co-adds together FITS images using
any arbitrary astrometric projection defined in the WCS standard.")
(license license:gpl3+)))
(define-public celestia
(let ((commit "9dbdf29c4ac3d20afb2d9a80d3dff241ecf81dce"))
(package
(name "celestia")
(version (git-version "1.6.1" "815" commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/celestiaproject/celestia")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"00xibg87l1arzifakgj7s828x9pszcgx7x7ij88a561ig49ryh78"))))
(build-system cmake-build-system)
(native-inputs
`(("perl" ,perl)
("libgit2" ,libgit2)
("pkg-config" ,pkg-config)
("libtool" ,libtool)
("gettext" ,gettext-minimal)))
(inputs
`(("glu" ,glu)
("glew" ,glew)
("libtheora" ,libtheora)
("libjpeg" ,libjpeg-turbo)
("libpng" ,libpng)
;; maybe required?
("mesa" ,mesa)
;; optional: fmtlib, Eigen3;
("fmt" ,fmt-7)
("eigen" ,eigen)
;; glut: for glut interface
("freeglut" ,freeglut)))
(propagated-inputs
(list lua))
(arguments
`(#:configure-flags '("-DENABLE_GLUT=ON" "-DENABLE_QT=OFF")
#:tests? #f)) ;no tests
(home-page "https://celestia.space/")
(synopsis "Real-time 3D visualization of space")
(description
"This simulation program lets you explore our universe in three
dimensions. Celestia simulates many different types of celestial objects.
From planets and moons to star clusters and galaxies, you can visit every
object in the expandable database and view it from any point in space and
time. The position and movement of solar system objects is calculated
accurately in real time at any rate desired.")
(license license:gpl2+))))
(define-public celestia-gtk
(package
(inherit celestia)
(name "celestia-gtk")
(inputs
(append (alist-delete "freeglut" (package-inputs celestia))
`(("gtk2" ,gtk+-2)
("gtkglext" ,gtkglext))))
(arguments
`(#:configure-flags '("-DENABLE_GTK=ON" "-DENABLE_QT=OFF")
#:tests? #f))))
(define-public python-astropy
(package
(name "python-astropy")
(version "5.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy" version))
(sha256
(base32 "0zkv3ddzlxx21i796azfbqxrqnsxn83vsczscv577iyzxp3v5c8x"))
(modules '((guix build utils)))
(snippet
'(begin
;; Remove Python bundles.
(with-directory-excursion "astropy/extern"
(for-each delete-file-recursively '("ply" "configobj")))
;; Remove cextern bundles and leave the wcslib bundle. Astropy
;; upgrades to different versions of wcslib every few releases
;; and tests break every upgrade.
;; TODO: unbundle wcslib.
(with-directory-excursion "cextern"
(for-each delete-file-recursively '("cfitsio" "expat")))
#t))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'preparations
(lambda _
;; Use our own libraries in place of bundles, with the
;; exception of wcslib.
(setenv "ASTROPY_USE_SYSTEM_CFITSIO" "1")
(setenv "ASTROPY_USE_SYSTEM_EXPAT" "1")
;; Some tests require a writable home.
(setenv "HOME" "/tmp")
;; Relax xfail tests.
(substitute* "setup.cfg"
(("xfail_strict = true") "xfail_strict = false"))
;; Replace all references to external ply.
(let ((ply-files '("coordinates/angle_formats.py"
"utils/parsing.py")))
(with-directory-excursion "astropy"
(map (lambda (file)
(substitute* file (("astropy.extern.ply")
"ply")))
ply-files)))
;; Replace reference to external configobj.
(with-directory-excursion "astropy/config"
(substitute* "configuration.py"
(("from astropy.extern.configobj ") "")))))
;; This file is opened in both install and check phases.
(add-before 'install 'writable-compiler
(lambda _ (make-file-writable "astropy/_compiler.c")))
(add-before 'check 'writable-compiler
(lambda _ (make-file-writable "astropy/_compiler.c")))
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
;; Extensions have to be rebuilt before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace")
(invoke "python" "-m" "pytest" "--pyargs" "astropy"
;; Skip tests that need remote data.
"-m" "not remote_data")))))))
(native-inputs
(list pkg-config
python-coverage
python-cython
python-extension-helpers
python-ipython
python-jplephem
python-objgraph
python-pytest-7.1
python-pytest-astropy
python-pytest-xdist
python-setuptools-scm
python-sgp4
python-skyfield))
(inputs
(list cfitsio expat))
(propagated-inputs
(list python-configobj
python-numpy
python-packaging
python-ply
python-pyerfa
python-pyyaml))
(home-page "https://www.astropy.org/")
(synopsis "Core package for Astronomy in Python")
(description
"Astropy is a single core package for Astronomy in Python. It contains
much of the core functionality and some common tools needed for performing
astronomy and astrophysics.")
(license license:bsd-3)))
(define-public python-astropy-healpix
(package
(name "python-astropy-healpix")
(version "0.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy_healpix" version))
(sha256
(base32 "1n1svmd41iv944zf4anbnsigd47zr4dfjf49vrc7m6928gmq9hw8"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
;; This file is opened in both install and check phases.
(add-before 'install 'writable-compiler
(lambda _ (make-file-writable "astropy_healpix/_compiler.c")))
(add-before 'check 'writable-compiler
(lambda _ (make-file-writable "astropy_healpix/_compiler.c")))
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
;; Extensions have to be rebuilt before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace")
(invoke "python" "-m" "pytest"
"--pyargs" "astropy_healpix")))))))
(native-inputs
(list python-extension-helpers
python-hypothesis
python-pytest-astropy
python-setuptools-scm))
(propagated-inputs
(list python-astropy python-numpy))
(home-page "https://github.com/astropy/astropy-healpix")
(synopsis "HEALPix for Astropy")
(description "This package provides HEALPix to the Astropy project.")
(license license:bsd-3)))
(define-public python-astroquery
(package
(name "python-astroquery")
(version "0.4.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astroquery" version))
(sha256
(base32 "1vhkzsqlgn3ji5by2rdf2gwklhbyzvpzb1iglalhqjkkrdaaaz1h"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'check 'writable-home
(lambda _ ; some tests need a writable home
(setenv "HOME" (getcwd))))
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(invoke "python" "-m" "pytest" "--pyargs" "astroquery"
;; Skip tests that require online data.
"-m" "not remote_data")))))))
(propagated-inputs
(list python-astropy
python-beautifulsoup4
python-html5lib
python-keyring
python-numpy
python-pyvo
python-requests))
(native-inputs
(list python-flask
python-jinja2
python-matplotlib
python-pytest-astropy
python-pytest-dependency))
(home-page "https://www.astropy.org/astroquery/")
(synopsis "Access online astronomical data resources")
(description "Astroquery is a package that contains a collection of tools
to access online Astronomical data. Each web service has its own sub-package.")
(license license:bsd-3)))
(define-public python-cdflib
(package
(name "python-cdflib")
(version "0.4.9")
(source
(origin
(method git-fetch) ; no tests in pypi archive
(uri (git-reference
(url "https://github.com/MAVENSDC/cdflib")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32 "1k557najk7ln293zwyghnhw48ays3nqf9s94kibsc7r70c2q7p08"))))
(build-system pyproject-build-system)
(arguments
(list #:phases
#~(modify-phases %standard-phases
(add-before 'check 'set-home-env
(lambda _
(setenv "HOME" (getcwd)))))))
(propagated-inputs
(list python-attrs python-numpy))
(native-inputs
(list python-astropy
python-hypothesis
python-pytest
python-pytest-cov
python-pytest-remotedata
python-xarray))
(home-page "https://github.com/MAVENSDC/cdflib")
(synopsis "Python library to deal with NASA's CDF astronmical data format")
(description "This package provides a Python @acronym{CDF, Computable
Document Format} reader toolkit.
It provides the following functionality:
@itemize
@item Ability to read variables and attributes from CDF files
@item Writes CDF version 3 files
@item Can convert between CDF time types (EPOCH/EPOCH16/TT2000) to other common
time formats
@item Can convert CDF files into XArray Dataset objects and vice versa,
attempting to maintain ISTP compliance
@end itemize")
(license license:expat)))
(define-public python-drms
(package
(name "python-drms")
(version "0.6.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "drms" version))
(sha256
(base32 "1b0w350y4wbgyy19zcf28xbb85mqq6gnhb6ppibbc4hbn2ixbcvj"))))
(build-system python-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key inputs outputs tests?
#:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(setenv "JSOC_EMAIL" "jsoc@sunpy.org")
(invoke "python" "-m" "pytest" "-vv")))))))
(native-inputs
(list python-astropy
python-pytest-astropy
python-pytest
python-setuptools-scm))
(propagated-inputs (list python-numpy python-pandas))
(home-page "https://sunpy.org")
(synopsis "Access astronomical HMI, AIA and MDI data with Python")
(description
"DRMS module provides an easy-to-use interface for accessing HMI, AIA and
MDI data with Python. It uses the publicly accessible
JSOC (@url{http://jsoc.stanford.edu/}) DRMS server by default, but can also be
used with local NetDRMS sites.")
(license license:bsd-2)))
(define-public python-ephem
(package
(name "python-ephem")
(version "4.1.3")
(source (origin
(method url-fetch)
(uri (pypi-uri "ephem" version))
(sha256
(base32
"0smmm3l8csnw9rrimh8mpyjrm80jaafjl184spnji98vk22qd8bz"))))
(build-system python-build-system)
(native-inputs (list tzdata))
(home-page "https://rhodesmill.org/pyephem/")
(synopsis "Compute positions of the planets and stars")
(description
"PyEphem provides an @code{ephem} Python package for performing
high-precision astronomy computations.
The name ephem is short for the word ephemeris, which is the traditional term
for a table giving the position of a planet, asteroid, or comet for a series
of dates.")
(license license:expat)))
(define-public python-hvpy
(package
(name "python-hvpy")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "hvpy" version))
(sha256
(base32 "0r0asyflz2sw9zn5vgs138nh81m0rbwbakmrncbc1ghdr3g6jahv"))))
(build-system pyproject-build-system)
(arguments
(list #:tests? #f)) ; Requires HTTP(S) access to api.beta.helioviewer.org
(propagated-inputs (list python-pydantic python-requests))
(native-inputs (list python-pytest python-pytest-astropy))
(home-page "https://helioviewer.org/")
(synopsis "Helioviewer Python API Wrapper")
(description "@code{hvpy} is a Python API wrapper around the formal
@url{Helioviewer API, https://api.helioviewer.org/docs/v2/}.")
(license license:bsd-2)))
(define-public python-mpl-animators
(package
(name "python-mpl-animators")
(version "1.1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "mpl_animators" version))
(sha256
(base32 "12kjmj7rn3pk9ly82h5s5hn0kl3kxkr7bgkz9zr9k59pir8z1r8b"))))
(build-system pyproject-build-system)
(native-inputs
(list python-pytest
python-pytest-mpl
python-setuptools-scm))
(propagated-inputs
(list python-astropy
python-matplotlib
python-numpy))
(home-page "https://sunpy.org")
(synopsis "Interactive animations with matplotlib")
(description
"The @code{mpl_animators} package provides a set of classes which allow
the easy construction of interactive matplotlib widget based animations.")
(license license:bsd-3)))
(define-public python-photutils
(package
(name "python-photutils")
(version "1.5.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "photutils" version))
(sha256
(base32 "129n268wnziprrv09f7y6f98cj1vh1bzp7ygsna10h3ilnjplkq1"))))
(build-system python-build-system)
(arguments
`(#:test-target "pytest"
#:phases
(modify-phases %standard-phases
;; This file is opened in both install and check phases.
(add-before 'install 'writable-compiler
(lambda _ (make-file-writable "photutils/_compiler.c")))
(add-before 'check 'writable-compiler
(lambda _ (make-file-writable "photutils/_compiler.c"))))))
(propagated-inputs
(list python-astropy python-numpy))
(native-inputs
(list python-cython
python-extension-helpers
python-pytest-astropy
python-pytest-runner
python-setuptools-scm))
(home-page "https://github.com/astropy/photutils")
(synopsis "Source detection and photometry")
(description "Photutils is an Astropy package for detection and photometry
of astronomical sources.")
(license license:bsd-3)))
(define-public python-pyvo
(package
(name "python-pyvo")
(version "1.2.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyvo" version))
(sha256
(base32 "1ri5yp6903386lkn79mdcmlax7zsfrrrjbcvb91wxydcc9yasc1n"))))
(build-system python-build-system)
(arguments
'(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "python" "-m" "pytest" "--pyargs" "pyvo" "-k"
(string-append ; these tests use the network
"not test_access_with_string"
" and not test_access_with_list"
" and not test_access_with_expansion"))))))))
(native-inputs
(list python-pytest-astropy python-requests-mock))
(propagated-inputs
(list python-astropy python-mimeparse python-pillow python-requests))
(home-page "https://github.com/astropy/pyvo")
(synopsis "Access Virtual Observatory data and services")
(description
"PyVO is a package providing access to remote data and services of the
Virtual observatory (VO) using Python.")
(license license:bsd-3)))
(define-public python-regions
(package
(name "python-regions")
(version "0.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "regions" version))
(sha256
(base32 "0p95bxxw4dgd16rh1yj7zvfbijk52dqvqj20nj6q8kr5ms08acl0"))))
(build-system python-build-system)
(arguments
`(#:test-target "pytest"
#:phases
(modify-phases %standard-phases
;; This doctest requires online data.
(add-after 'unpack 'delete-doctest
(lambda _ (delete-file "docs/masks.rst")))
;; This file is opened in both install and check phases.
(add-before 'install 'writable-compiler
(lambda _ (make-file-writable "regions/_compiler.c")))
(add-before 'check 'writable-compiler
(lambda _ (make-file-writable "regions/_compiler.c")))
(add-before 'check 'writable-home
(lambda _ (setenv "HOME" (getcwd)))))))
(propagated-inputs
(list python-astropy python-numpy))
(native-inputs
(list python-cython
python-extension-helpers
python-pytest-arraydiff
python-pytest-astropy
python-pytest-runner
python-setuptools-scm))
(home-page "https://github.com/astropy/regions")
(synopsis "Package for region handling")
(description "Regions is an Astropy package for region handling.")
(license license:bsd-3)))
(define-public python-reproject
(package
(name "python-reproject")
(version "0.9.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "reproject" version))
(sha256
(base32 "1msysqbhkfi3bmw29wipk250a008bnng7din56md9ipbwiar8x55"))))
(build-system pyproject-build-system)
(arguments
(list
;; FIXME: Failing tests
;;
;; reproject/adaptive/core.py:7: in <module>
;; from .deforest import map_coordinates
;; E ModuleNotFoundError: No module named 'reproject.adaptive.deforest'
;;
#:tests? #f
#:phases
#~(modify-phases %standard-phases
(add-before 'install 'writable-compiler
(lambda _
(make-file-writable "reproject/_compiler.c")))
(add-before 'check 'writable-compiler
(lambda _
(make-file-writable "reproject/_compiler.c")))
(add-before 'check 'writable-home
(lambda _
(setenv "HOME" (getcwd)))))))
(propagated-inputs
(list python-astropy
python-astropy-healpix
python-numpy
python-scipy))
(native-inputs
(list python-asdf
python-cython
python-extension-helpers
python-gwcs
python-pytest-astropy
python-pyvo
python-semantic-version
python-pytest
python-setuptools-scm
python-shapely))
(home-page "https://reproject.readthedocs.io")
(synopsis "Astronomical image reprojection in Python")
(description
"This package provides a functionality to reproject astronomical images using
various techniques via a uniform interface, where reprojection is the
re-gridding of images from one world coordinate system to another e.g.
changing the pixel resolution, orientation, coordinate system.")
(license license:bsd-3)))
(define-public python-sunpy
(package
(name "python-sunpy")
(version "4.0.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sunpy" version))
(sha256
(base32 "0aiirb6l8zshdrpsvh6d5ki759ah9zfm9gbl0in985hprwwxyrq1"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-before 'install 'writable-compiler
(lambda _
(make-file-writable "sunpy/_compiler.c")))
(add-before 'check 'prepare-test-environment
(lambda _
(setenv "HOME" "/tmp")
(make-file-writable "sunpy/_compiler.c")
;; TODO: (Sharlatan-20221106T115800+0000): Review failing tests
(substitute* "sunpy/image/tests/test_transform.py"
(("def test_clipping") "def __off_test_clipping")
(("def test_nans") "def __off_test_nans")
(("def test_endian") "def __off_test_endian"))
(substitute* "sunpy/map/tests/test_mapbase.py"
(("def test_derotating_nonpurerotation_pcij")
"def __off_test_derotating_nonpurerotation_pcij"))
(substitute* "sunpy/map/sources/tests/test_mdi_source.py"
(("def test_synoptic_source")
"def __off_test_synoptic_source"))
(substitute* "sunpy/tests/tests/test_self_test.py"
(("def test_main_nonexisting_module")
"def __off_test_main_nonexisting_module")
(("def test_main_stdlib_module")
"def __off_test_main_stdlib_module")))))))
(native-inputs
(list python-aiohttp
python-extension-helpers
python-hvpy
python-packaging
python-pytest
python-pytest-astropy
python-pytest-doctestplus
python-pytest-mock
python-pytest-mpl
python-pytest-xdist
python-setuptools-scm))
(propagated-inputs
(list parfive
python-asdf
python-asdf-astropy
python-astropy
python-beautifulsoup4
python-cdflib
python-dask
python-dateutil
python-drms
python-glymur
python-h5netcdf
python-h5py
python-hypothesis
python-jplephem
python-matplotlib
python-mpl-animators
python-numpy
;; python-opencv-python ; not packed yet
python-pandas
python-reproject
python-scikit-image
python-scipy
python-semantic-version
python-sqlalchemy
python-tqdm
python-zeep))
(home-page "https://sunpy.org")
(synopsis "Python library for Solar Physics")
(description
"SunPy is package for solar physics and is meant to be a free alternative to the
SolarSoft data analysis environment.")
(license license:bsd-2)))
(define-public python-astral
(package
(name "python-astral")
(version "2.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astral" version))
(sha256
(base32 "1gkggdibccmdy9glymw3kbrkzm6svvsg0lk56hhy92y4smkrj7g4"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(invoke "python" "-m" "pytest")))))))
(native-inputs
(list python-freezegun python-setuptools-scm))
(propagated-inputs
(list python-dataclasses python-pytest python-pytz))
(home-page "https://github.com/sffjunkie/astral")
(synopsis "Calculations for the position of the sun and moon")
(description "Astral is a Python module that calculates times for various
positions of the sun: dawn, sunrise, solar noon, sunset, dusk, solar
elevation, solar azimuth, rahukaalam, and the phases of the moon.")
(license license:asl2.0)))
(define-public libnova
(package
(name "libnova")
(version "0.16")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://git.code.sf.net/p/libnova/libnova.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0icwylwkixihzni0kgl0j8dx3qhqvym6zv2hkw2dy6v9zvysrb1b"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-git-version
(lambda _
(substitute* "./git-version-gen"
(("/bin/sh") (which "sh")))
#t)))))
(native-inputs
(list autoconf automake libtool))
(synopsis "Celestial mechanics, astrometry and astrodynamics library")
(description "Libnova is a general purpose, double precision, Celestial
Mechanics, Astrometry and Astrodynamics library.")
(home-page "http://libnova.sourceforge.net/")
(license (list license:lgpl2.0+
license:gpl2+)))) ; examples/transforms.c & lntest/*.c
(define-public libsep
(package
(name "libsep")
(version "1.2.1")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/kbarbary/sep")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0sag96am6r1ffh9860yq40js874362v3132ahlm6sq7padczkicf"))))
(build-system cmake-build-system)
(arguments
(list
#:make-flags #~(list (string-append "CC=" #$(cc-for-target))
(string-append "PREFIX=" #$output))
#:phases #~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(chdir "../source")
(invoke "make"
(string-append "CC=" #$(cc-for-target))
"test")))))))
(native-inputs
(list python-wrapper))
(home-page "https://github.com/kbarbary/sep")
(synopsis "Astronomical source extraction and photometry library")
(description
"SEP makes the core algorithms of
@url{https://www.astromatic.net/software/sextractor/, sextractor} available as a
library of stand-alone functions and classes. These operate directly on
in-memory arrays (no FITS files or configuration files). The code is derived
from the Source Extractor code base (written in C) and aims to produce results
compatible with Source Extractor whenever possible. SEP consists of a C library
with no dependencies outside the standard library, and a Python module that
wraps the C library in a Pythonic API. The Python wrapper operates on NumPy
arrays with NumPy as its only dependency.")
(license (list license:expat license:lgpl3+ license:bsd-3))))
(define-public libskry
(package
(name "libskry")
(version "0.3.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/GreatAttractor/libskry")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "14kwng0j8wqzlb0gqg3ayq36l15dpz7kvxc56fa47j55b376bwh6"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags
(list
(string-append
"LIBAV_INCLUDE_PATH=" (assoc-ref %build-inputs "ffmpeg") "/include"))
#:phases
(modify-phases %standard-phases
(delete 'configure) ;; no configure provided
(delete 'check) ;; no tests provided
(replace 'install
;; The Makefile lacks an ‘install’ target.
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(lib (string-append out "/lib"))
(include (string-append out "/include")))
(copy-recursively "bin" lib)
(copy-recursively "include" include))
#t)))))
(inputs
(list ffmpeg))
(home-page "https://github.com/GreatAttractor/libskry")
(synopsis "Astronimical lucky imaging library")
(description
"@code{libskry} implements the lucky imaging principle of astronomical
imaging: creating a high-quality still image out of a series of many thousands)
low quality ones")
(license license:gpl3+)))
(define-public libpasastro
;; NOTE: (Sharlatan-20210122T215921+0000): the version tag has a build
;; error on spice which is resolved with the latest commit.
(let ((commit "e3c218d1502a18cae858c83a9a8812ab197fcb60")
(revision "1"))
(package
(name "libpasastro")
(version (git-version "1.4.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/pchev/libpasastro")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0asp2sn34nds5va2ghppwc41vb6j3d1mf049j949rgrll817kx47"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f
#:make-flags
(list
,(match (or (%current-target-system) (%current-system))
((or "aarch64-linux" "armhf-linux" "i686-linux" "x86_64-linux")
"OS_TARGET=linux")
(_ #f))
,(match (or (%current-target-system) (%current-system))
("i686-linux" "CPU_TARGET=i386")
("x86_64-linux" "CPU_TARGET=x86_64")
((or "armhf-linux" "aarch64-linux") "CPU_TARGET=armv7l")
(_ #f))
(string-append "PREFIX=" (assoc-ref %outputs "out")))
#:phases
(modify-phases %standard-phases
(delete 'configure))))
(home-page "https://github.com/pchev/libpasastro")
(synopsis "Interface to astronomy library for use from Pascal program")
(description
"This package provides shared libraries to interface Pascal program with
standard astronomy libraries:
@itemize
@item @code{libpasgetdss.so}: Interface with GetDSS to work with DSS images.
@item @code{libpasplan404.so}: Interface with Plan404 to compute planets position.
@item @code{libpaswcs.so}: Interface with libwcs to work with FITS WCS.
@item @code{libpasspice.so}: To work with NAIF/SPICE kernel.
@end itemize\n")
(license license:gpl2+))))
(define-public missfits
(package
(name "missfits")
(version "2.8.0")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.astromatic.net/download/missfits/"
"missfits-" version ".tar.gz"))
(sha256
(base32 "04jrd7fsvzr14vdmwgj2f6v97gdcfyjyz6jppml3ghr9xh12jxv5"))))
(build-system gnu-build-system)
(home-page "https://www.astromatic.net/software/missfits")
(synopsis "FITS files Maintenance program")
(description
"MissFITS is a program that performs basic maintenance and packaging tasks
on FITS files:
@itemize
@item add/edit FITS header keywords
@item split/join Multi-Extension-FITS (MEF) files
@item unpack/pack FITS data-cubes
@item create/check/update FITS checksums, using R. Seaman's protocol
(see http://www.adass.org/adass/proceedings/adass94/seamanr.html)
@end itemize\n")
(license license:gpl3+)))
(define-public xplanet
(package
(name "xplanet")
(version "1.3.1")
(source
(origin
(method url-fetch)
(uri
(string-append
"mirror://sourceforge/xplanet/xplanet/"
version "/xplanet-" version ".tar.gz"))
(sha256
(base32 "1rzc1alph03j67lrr66499zl0wqndiipmj99nqgvh9xzm1qdb023"))
(patches
(search-patches
"xplanet-1.3.1-cxx11-eof.patch"
"xplanet-1.3.1-libdisplay_DisplayOutput.cpp.patch"
"xplanet-1.3.1-libimage_gif.c.patch"
"xplanet-1.3.1-xpUtil-Add2017LeapSecond.cpp.patch"))))
(build-system gnu-build-system)
(native-inputs
(list pkg-config))
(inputs
`(("libx11" ,libx11)
("libxscrnsaver" ,libxscrnsaver)
("libice" ,libice)
("freetype" ,freetype)
("pango" ,pango)
("giflib" ,giflib)
("libjpeg" ,libjpeg-turbo)
("libpng" ,libpng)
("libtiff" ,libtiff)
("netpbm" ,netpbm)
("zlib" ,zlib)))
(arguments
`(#:configure-flags
(let ((netpbm (assoc-ref %build-inputs "netpbm")))
(append (list
;; Give correct path for pnm.h header to configure script
(string-append "CPPFLAGS=-I" netpbm "/include/netpbm")
;; no nasa jpl cspice support
"--without-cspice" )))))
(home-page "http://xplanet.sourceforge.net/")
(synopsis "Planetary body renderer")
(description
"Xplanet renders an image of a planet into an X window or file.
All of the major planets and most satellites can be drawn and different map
projections are also supported, including azimuthal, hemisphere, Lambert,
Mercator, Mollweide, Peters, polyconic, orthographic and rectangular.")
(license license:gpl2+)))
(define-public gpredict
(package
(name "gpredict")
(version "2.2.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/csete/gpredict/releases"
"/download/v" version
"/gpredict-" version ".tar.bz2"))
(sha256
(base32 "0hwf97kng1zy8rxyglw04x89p0bg07zq30hgghm20yxiw2xc8ng7"))))
(build-system gnu-build-system)
(native-inputs
`(("intltool" ,intltool)
("gettext" ,gettext-minimal)
("pkg-config" ,pkg-config)))
(inputs
(list curl glib goocanvas gtk+))
(arguments
`(#:configure-flags '("CFLAGS=-O2 -g -fcommon")
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-tests
(lambda _
;; Remove reference to non-existent file.
(substitute* "po/POTFILES.in"
(("src/gtk-sat-tree\\.c")
""))
#t)))))
(synopsis "Satellite tracking and orbit prediction application")
(description
"Gpredict is a real-time satellite tracking and orbit prediction
application. It can track a large number of satellites and display their
position and other data in lists, tables, maps, and polar plots (radar view).
Gpredict can also predict the time of future passes for a satellite, and
provide you with detailed information about each pass.")
(home-page "http://gpredict.oz9aec.net/index.php")
(license license:gpl2+)))
(define-public sgp4
;; No tagged releases, use commit directly.
(let ((commit "ca9d4d97af4ee62461de6f13e0c85d1dc6000040")
(revision "1"))
(package
(name "sgp4")
(version (git-version "0.0.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/dnwrnr/sgp4")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1xwfa6papmd2qz5w0hwzvijmzvp9np8dlw3q3qz4bmsippzjv8p7"))))
(build-system cmake-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda _
;; Tests fails, probably because of a few "(e <= -0.001)" errors.
;; Or maybe this is not the right way to run the tests?
;; (invoke "runtest/runtest")
#t)))))
(home-page "https://github.com/dnwrnr/sgp4")
(synopsis "Simplified perturbations models library")
(description
"This is a library implementing the simplified perturbations model.
It can be used to calculate the trajectory of satellites.")
(license license:asl2.0))))
(define-public imppg
(package
(name "imppg")
(version "0.6.5")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/GreatAttractor/imppg")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0a6wb1a9adwd01dmy0r03xxp8iz9y7mvh30088ajilhj4lf90vxa"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ;no test provided
#:phases
(modify-phases %standard-phases
(replace 'configure
(lambda* (#:key outputs #:allow-other-keys)
(mkdir-p "build")
(chdir "build")
(invoke
"cmake"
"-G" "Unix Makefiles"
"-DCMAKE_BUILD_TYPE=Release"
(string-append "-DCMAKE_INSTALL_PREFIX=" (assoc-ref outputs "out"))
".."))))))
(native-inputs
(list boost pkg-config))
(inputs
(list cfitsio freeimage glew wxwidgets))
(home-page "https://github.com/GreatAttractor/imppg")
(synopsis "Astronomical Image Post-Proccessor (ImPPG)")
(description
"ImPPG performs Lucy-Richardson deconvolution, unsharp masking,
brightness normalization and tone curve adjustment. It can also apply
previously specified processing settings to multiple images. All operations
are performed using 32-bit floating-point arithmetic.
Supported input formats: FITS, BMP, JPEG, PNG, TIFF (most of bit depths and
compression methods), TGA and more. Images are processed in grayscale and can
be saved as: BMP 8-bit; PNG 8-bit; TIFF 8-bit, 16-bit, 32-bit
floating-point (no compression, LZW- or ZIP-compressed), FITS 8-bit, 16-bit,
32-bit floating-point.")
(license license:gpl3+)))
(define-public indi
(package
(name "indi")
(version "1.9.3")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/indilib/indi")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0c7md288d3g2vf0m1ai6x2l4j4rmlasc4rya92phvd4ynf8vcki2"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
(let ((out (assoc-ref %outputs "out")))
(list
"-DINDI_BUILD_UNITTESTS=ON"
"-DCMAKE_BUILD_TYPE=Release"
(string-append "-DCMAKE_INSTALL_PREFIX=" out)
(string-append "-DUDEVRULES_INSTALL_DIR=" out "/lib/udev/rules.d")))
#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(with-directory-excursion "test"
(invoke "ctest")))))
(add-before 'install 'set-install-directories
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(mkdir-p (string-append out "/lib/udev/rules.d"))))))))
(native-inputs
(list googletest))
(inputs
(list cfitsio
curl
fftw
gsl
libjpeg-turbo
libnova
libtiff
libusb
zlib))
(home-page "https://www.indilib.org")
(synopsis "Library for astronimical intrumentation control")
(description
"INDI (Instrument-Neutral Device Interface) is a distributed XML-based
control protocol designed to operate astronomical instrumentation. INDI is
small, flexible, easy to parse, scalable, and stateless. It supports common
DCS functions such as remote control, data acquisition, monitoring, and a lot
more.")
(license (list license:bsd-3
license:gpl2+
license:lgpl2.0+
license:lgpl2.1+))))
(define-public sunclock
(let ((commit "f4106eb0a81f7594726d6b2859efd8fc64cc1225")
(revision "1"))
(package
(name "sunclock")
(version (git-version "3.57" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/nongiach/Sunclock")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "1rczdpmhvfw57b9r793vq8vqlbdhlkgj52fxwrdfl6cwj95a9kv2"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags
(list (string-append "DESTDIR=" %output)
;; Fix incorrect argument given to gcc. Error message:
;; "gcc: error: DefaultGcc2AMD64Opt: No such file or directory"
"CDEBUGFLAGS=")
#:phases
(modify-phases %standard-phases
(replace 'configure
(lambda _
(chdir "sunclock-3.57")
(substitute* "Imakefile"
(("^MANDIR=/X11R6/man/man1")
"MANDIR=/share/man/man1")
(("^BINDIR=/X11R6/bin")
"BINDIR=/bin")
;; Disable ZLIB support for vmf files because zlib implements
;; `gzgetc` as a macro instead of a function, which results in
;; a compilation error.
((" -DZLIB") "")
((" -lz") "")
(("cd \\$\\(DESTDIR\\)\\$\\(SHAREDIR\\)/earthmaps/vmf ; \
gzip -f \\*.vmf")
""))
;; Generate Makefile.
(invoke "xmkmf"))))
#:tests? #f)) ; No check target.
(inputs
(list libjpeg-turbo libpng libx11 libxpm))
(native-inputs
(list imake))
(home-page "https://github.com/nongiach/Sunclock")
(synopsis
"Map of the Earth that shows which portion is illuminated by the Sun")
(description
"Sunclock displays a map of the Earth and shows which portion is
illuminated by the Sun. It can commute between two states, the \"clock window\"
and the \"map window\". The clock window displays a small map of the Earth and
therefore occupies little space on the screen, while the \"map window\" displays
a large map and offers more advanced functions: local time of cities, Sun and
Moon position, etc.")
(license license:gpl2+))))
(define-public python-jplephem
(package
(name "python-jplephem")
(version "2.17")
(source
(origin
(method url-fetch)
(uri (pypi-uri "jplephem" version))
(sha256
(base32 "09xaibxnwbzzs3x9g3ibqa2la17z3r6in93321glh02dbibfbip1"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
(when tests?
(let ((out (assoc-ref outputs "out")))
(add-installed-pythonpath inputs outputs)
(setenv "PATH" (string-append out "/bin:" (getenv "PATH")))
(invoke "python" "-m" "unittest" "discover" "-s" "test"))))))))
(inputs
(list python-numpy))
(home-page "https://github.com/brandon-rhodes/python-jplephem")
(synopsis "Python version of NASA DE4xx ephemerides")
(description
"The package is a Python implementation of the mathematics that standard
JPL ephemerides use to predict raw (x,y,z) planetary positions.")
(license license:expat)))
(define-public python-pyerfa
(package
(name "python-pyerfa")
(version "2.0.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyerfa" version))
(sha256
(base32 "0c6y1rm51kj8ahbr1vwbswck3ix77dc3zhc2fkg6w7iczrzn7m1g"))
(modules '((guix build utils)))
(snippet
'(begin
;; Remove bundled submodule library.
(delete-file-recursively "liberfa")
#t))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'build 'use-system-liberfa
(lambda _
(setenv "PYERFA_USE_SYSTEM_LIBERFA" "1"))))))
(native-inputs
(list python-pytest-doctestplus python-pytest python-setuptools-scm))
(inputs
(list erfa))
(propagated-inputs
(list python-numpy))
(home-page "https://github.com/liberfa/pyerfa")
(synopsis "Python bindings for ERFA")
(description
"PyERFA is the Python wrapper for the ERFA library (Essential
Routines for Fundamental Astronomy), a C library containing key algorithms for
astronomy, which is based on the SOFA library published by the International
Astronomical Union (IAU). All C routines are wrapped as Numpy universal
functions, so that they can be called with scalar or array inputs.")
(license license:bsd-3)))
(define-public python-pynbody
(package
(name "python-pynbody")
(version "1.2.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pynbody" version))
(sha256
(base32 "1jxwk2s4qz1znvyak2lj7ld01kl1jh87xp81ki7a8dz1gcy93fkx"))))
(build-system python-build-system)
(arguments
(list #:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'disable-tests-require-testdata
(lambda _
;; Disable tests which need to download additional 1.0GiB+
;; of test data archive from
;; http://star.ucl.ac.uk/~app/testdata.tar.gz
;; https://github.com/pynbody/pynbody/blob/ \
;; f4bd482dc47532831b3ec115c7cb07149d61bfc5/ \
;; .github/workflows/build-test.yaml#L41
(with-directory-excursion "tests"
(for-each delete-file
'("gravity_test.py"
"adaptahop_test.py"
"ahf_halos_test.py"
"array_test.py"
"bridge_test.py"
"family_test.py"
"partial_tipsy_test.py"
"snapshot_test.py"
"test_profile.py"
"gadget_test.py"
"gadgethdf_test.py"
"grafic_test.py"
"halotools_test.py"
"nchilada_test.py"
"ramses_new_ptcl_format_test.py"
"ramses_test.py"
"rockstar_test.py"
"sph_image_test.py"
"sph_smooth_test.py"
"subfind_test.py"
"subfindhdf_gadget4_test.py"
"tipsy_test.py")))))
(replace 'check
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(setenv "HOME" "/tmp")
(invoke "pytest" "-vv")))))))
(native-inputs
(list python-cython
python-pandas
python-pytest))
(propagated-inputs
(list python-h5py
python-matplotlib
python-numpy
python-posix-ipc
python-scipy))
(home-page "https://pynbody.github.io/pynbody/index.html")
(synopsis "Light-weight astronomical N-body/SPH analysis for python")
(description "@code{Pynbody} is an analysis framework for N-body and hydrodynamic
astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
N-Chilada and RAMSES AMR outputs.")
(license license:gpl3+)))
(define-public python-sep
(package
(inherit libsep)
(name "python-sep")
(build-system python-build-system)
(arguments
(strip-keyword-arguments
'(#:make-flags) (package-arguments libsep)))
(native-inputs
(modify-inputs (package-inputs libsep)
(prepend python-cython)))
(propagated-inputs
(modify-inputs (package-inputs libsep)
(prepend python-numpy)))))
(define-public python-suntime
(package
(name "python-suntime")
(version "1.2.5")
(source (origin
(method url-fetch)
(uri (pypi-uri "suntime" version))
(sha256
(base32
"0ja64w293wjx76q3z18ikx4rdihwkbj6pnjpbs82ycyyzhfnbpz4"))))
(build-system python-build-system)
(propagated-inputs (list python-dateutil))
(home-page "https://github.com/SatAgro/suntime")
(synopsis "Sunset and sunrise time calculation python library")
(description
"Python library doing sunrise and sunset time calculation.
Takes a WGS84 (GPS) latitude/longitude as input as well as an UTC or local
datetime object.")
(license license:lgpl3+)))
(define-public python-asdf
(package
(name "python-asdf")
(version "2.13.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf" version))
(sha256
(base32 "1zixzv4n2fryaszsfchqh2nvp0gzvarhz03fc721yw6iafdadqij"))))
(build-system pyproject-build-system)
(arguments
;; FIXME: Tests fail a lot with
;;
;; ERROR - _pytest.pathlib.ImportPathMismatchError:
;; ('asdf.conftest', '/gnu/sto...
;;
`(#:tests? #f))
(native-inputs
(list python-astropy
python-packaging
python-psutil
python-pytest
python-pytest-doctestplus
python-pytest-openfiles
python-pytest-remotedata
python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf-standard
python-asdf-transform-schemas
python-asdf-unit-schemas
python-importlib-metadata
python-importlib-resources
python-jmespath
python-jsonschema-next
python-lz4
python-numpy
python-pyyaml))
(home-page "https://github.com/asdf-format/asdf")
(synopsis "Python tools to handle ASDF files")
(description
"The Advanced Scientific Data Format (ASDF) is a next-generation
interchange format for scientific data. This package contains the Python
implementation of the ASDF Standard.")
(license license:bsd-3)))
(define-public python-asdf-standard
(package
(name "python-asdf-standard")
(version "1.0.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf_standard" version))
(sha256
(base32
"0i7xdjwn5prg2hcnf1zhw57mszc68jjr5sv4rimpzcg7f2dgzn5g"))))
(build-system pyproject-build-system)
(arguments
(list #:phases #~(modify-phases %standard-phases
(add-before 'check 'remove-blocking-tests
(lambda _
;; Remove tests require python-asdf where
;; python-asdf require python-asdf-standard,
;; break circular dependencies.
(for-each delete-file
(list "tests/test_manifests.py"
"tests/test_integration.py")))))))
(native-inputs (list python-astropy
python-jsonschema-next
python-pypa-build
python-pytest-7.1
python-packaging
python-setuptools-scm))
(propagated-inputs (list python-importlib-resources))
(home-page "https://asdf-standard.readthedocs.io/")
(synopsis "ASDF standard schemas")
(description
"This package provides Python implementation of @acronym{ASDF, Advanced
Scientific Data Format} - a proposed next generation interchange format for
scientific data. ASDF aims to exist in the same middle ground that made FITS
so successful, by being a hybrid text and binary format: containing human
editable metadata for interchange, and raw binary data that is fast to load
and use. Unlike FITS, the metadata is highly structured and is designed
up-front for extensibility.")
(license license:bsd-3)))
(define python-asdf-transform-schemas
(package
(name "python-asdf-transform-schemas")
(version "0.3.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf_transform_schemas" version))
(sha256
(base32 "1midgn575970p5cnsh9y6bz77fjr392b5nfxb3z0id6c49xzzwhc"))))
(build-system pyproject-build-system)
(arguments
;; Dependency cycle with python-asdf
(list #:tests? #f))
(native-inputs (list python-setuptools-scm))
(propagated-inputs (list python-asdf-standard python-importlib-resources))
(home-page "https://github.com/asdf-format/asdf-transform-schemas")
(synopsis "ASDF schemas for transforms")
(description
"This package provides ASDF schemas for validating transform tags. Users
should not need to install this directly; instead, install an implementation
package such as asdf-astropy.")
(license license:bsd-3)))
(define python-asdf-coordinates-schemas
(package
(name "python-asdf-coordinates-schemas")
(version "0.1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf_coordinates_schemas" version))
(sha256
(base32 "0ahwhsz5jzljnpkfd2kvspirg823lnj5ip9sfkd9cx09z1nlz8jg"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(invoke "python" "-m" "pytest")))))))
(native-inputs
(list python-pytest
python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf))
(home-page "https://github.com/asdf-format/asdf-coordinates-schemas")
(synopsis "ASDF coordinates schemas")
(description "This package provides ASDF schemas for validating
coordinates tags. Users should not need to install this directly; instead,
install an implementation package such as asdf-astropy.")
(license license:bsd-3)))
(define python-asdf-fits-schemas
;; TODO: No release, change to tag when it's ready.
(let ((commit "572bb370d777f3a325b25c1af9d76e1b7d27dcea")
(revision "0"))
(package
(name "python-asdf-fits-schemas")
(version (git-version "0.0.1" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/asdf-format/asdf-fits-schemas")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1yqnzd0gcrdfl0jqm8m8kz5fd36i8lgh7xkglmp1chsi1cc6mkz2"))))
(build-system pyproject-build-system)
(arguments
(list
;; Dependency cycle with python-asdf
#:tests? #f
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'set-version
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
(native-inputs (list python-setuptools-scm))
(propagated-inputs (list python-asdf-standard python-importlib-resources))
(home-page "https://github.com/asdf-format/asdf-fits-schemas")
(synopsis "ASDF schemas to support the FITS format")
(description
"This package provides ASDF schemas for validating FITS tags.")
(license license:bsd-3))))
(define python-asdf-time-schemas
;; TODO: No release, change to tag when it's ready.
(let ((commit "e9174083d9cfd3c6f7ded9eeb360d99ccb8d9d18")
(revision "2"))
(package
(name "python-asdf-time-schemas")
(version (git-version "0.0.1" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/asdf-format/asdf-time-schemas")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1i40hcxp8sds2zq939fwczjlshfqb9r9pnzy3a44c3wqdbwhcbdb"))))
(build-system pyproject-build-system)
(arguments
(list
;; Dependency cycle with python-asdf
#:tests? #f
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'set-version
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
(native-inputs (list python-setuptools-scm))
(propagated-inputs (list python-asdf-standard
python-asdf-unit-schemas
python-importlib-resources))
(home-page "https://github.com/asdf-format/asdf-fits-schemas")
(synopsis "Schemas for storing time in ASDF")
(description
"This package provides ASDF schemas for validating time tags.")
(license license:bsd-3))))
(define python-asdf-unit-schemas
(package
(name "python-asdf-unit-schemas")
(version "0.1.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf_unit_schemas" version))
(sha256
(base32
"16grpx3a9h0v1wirp0zqrfsxm867v5c0xyr98pylzziy45kqvds2"))))
(build-system pyproject-build-system)
(arguments
;; Dependency cycle with python-asdf
(list #:tests? #f))
(native-inputs (list python-setuptools-scm))
(propagated-inputs (list python-asdf-standard python-importlib-resources))
(home-page "https://asdf-unit-schemas.readthedocs.io/")
(synopsis "ASDF serialization schemas for the units defined by @code{astropy.units}")
(description "This package provides ASDF schemas for validating unit tags.")
(license license:bsd-3)))
(define-public python-asdf-astropy
(package
(name "python-asdf-astropy")
(version "0.2.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf_astropy" version))
(sha256
(base32 "1b0v4cl7xvly3x1k5k2rvc2l32jqgqp0iyf1j20fkvj450sx74f2"))))
(build-system pyproject-build-system)
(native-inputs
(list python-coverage
python-h5py
python-matplotlib
python-pandas
python-pytest-astropy
python-scipy
python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf
python-asdf-coordinates-schemas
python-asdf-transform-schemas
python-astropy
python-numpy
python-packaging))
(home-page "https://github.com/astropy/asdf-astropy")
(synopsis "ASDF serialization support for astropy")
(description
"This package includes plugins that provide ASDF serialization support for
Astropy objects.")
(license license:bsd-3)))
(define python-asdf-wcs-schemas
(package
(name "python-asdf-wcs-schemas")
(version "0.1.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asdf_wcs_schemas" version))
(sha256
(base32 "0khyab9mnf2lv755as8kwhk3lqqpd3f4291ny3b9yp3ik86fzhz1"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(invoke "python" "-m" "pytest")))))))
(native-inputs
(list python-pytest
python-setuptools-scm
python-semantic-version))
(propagated-inputs
(list python-asdf))
(home-page "https://github.com/asdf-format/asdf-wcs-schemas")
(synopsis "ASDF WCS Schemas")
(description
"This package provides ASDF schemas for validating World Coordinate
System (WCS) tags. Users should not need to install this directly; instead,
install an implementation package such as gwcs.")
(license license:bsd-3)))
(define-public python-gwcs
(package
(name "python-gwcs")
(version "0.18.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "gwcs" version))
(sha256
(base32 "0v9qcq6zl74d6s882s6xmas144jfalvll6va8rvrxmvpx4vqjzhg"))))
(build-system pyproject-build-system)
(native-inputs
(list python-jsonschema-next
python-jmespath
python-pytest
python-pytest-doctestplus
python-pyyaml
python-semantic-version
python-setuptools-scm))
(propagated-inputs
(list python-asdf
python-asdf-astropy
python-asdf-wcs-schemas
python-astropy
python-numpy
python-scipy))
(home-page "https://gwcs.readthedocs.io/en/latest/")
(synopsis "Generalized World Coordinate System")
(description "Generalized World Coordinate System (GWCS) is an Astropy
affiliated package providing tools for managing the World Coordinate System of
astronomical data.
GWCS takes a general approach to the problem of expressing transformations
between pixel and world coordinates. It supports a data model which includes
the entire transformation pipeline from input coordinates (detector by
default) to world coordinates.")
(license license:bsd-3)))
(define-public python-astroalign
(package
(name "python-astroalign")
(version "2.3.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astroalign" version))
(sha256
(base32 "19qzv3552lgrd9qmj0rxs51wmx485hw04cbf76ds5pin85kfaiy1"))))
(build-system python-build-system)
(arguments
;; TODO: (Sharlatan-20210213T162940+0000): I could not make tests run
`(#:tests? #f))
(inputs
`(("numpy" ,python-numpy)
("scikit-image" ,python-scikit-image)
("scipy" ,python-scipy)
("sep" ,python-sep)))
(home-page "https://astroalign.readthedocs.io/")
(synopsis "Astrometric Alignment of Images")
(description
"ASTROALIGN is a python module that will try to align two stellar
astronomical images, especially when there is no WCS information available.")
(license license:expat)))
(define-public python-skyfield
(package
(name "python-skyfield")
(version "1.39")
(source
(origin
(method url-fetch)
(uri (pypi-uri "skyfield" version))
(sha256
(base32 "1qh3k7g9dm6idppk87hnwxpx9a22xx98vav0zk31p6291drak3as"))))
(build-system python-build-system)
(arguments
;; NOTE: (Sharlatan-20210207T163305+0000): tests depend on custom test
;; framework https://github.com/brandon-rhodes/assay
`(#:tests? #f))
(inputs
(list python-certifi python-jplephem python-numpy python-sgp4))
(home-page "https://rhodesmill.org/skyfield/")
(synopsis "Astronomy for Python")
(description
"Skyfield computes positions for the stars, planets, and satellites in
orbit around the Earth.")
(license license:expat)))
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