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guix/gnu/packages/patches/metabat-fix-compilation.patch
Ben Woodcroft f3f68a442c
gnu: metabat: Update to 2.11.1.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-07-23 10:29:36 +10:00

39 lines
1.8 KiB
Diff

This patch changes metabat so that (1) it is not build statically, (2) it uses
shared libraries rather than static libraries where possible.
diff --git a/SConstruct b/SConstruct
index 69cdc0a..ac99bcb 100644
--- a/SConstruct
+++ b/SConstruct
@@ -26,8 +26,6 @@ debug = ARGUMENTS.get('DEBUG', None)
build_flags = ['-Wall', '-g', '-std=c++11', '-fopenmp']
link_flags = ['-lstdc++', '-lm', '-fopenmp']
-if platform.platform(True, True).find('Darwin') == -1:
- link_flags.extend(['-static', '-static-libgcc', '-static-libstdc++'])
if debug is None:
build_flags.extend(['-O3', '-DNDEBUG', '-Wno-unknown-pragmas', '-Wno-deprecated-declarations', '-Wno-overflow', '-Wno-unused-variable'])
@@ -110,17 +108,17 @@ def findStaticOrShared( lib, testPaths, static_source_list, link_flag_list, stat
for path in testPaths:
if not os.path.isdir(path):
continue
+ for testfile in ('%s/lib%s.so' % (path, lib), '%s/lib%s.dylib' % (path, lib)):
+ if os.path.isfile(testfile):
+ print "Found shared library %s as %s" % (lib, testfile)
+ link_flag_list.extend( ["-L%s" % (path), "-l%s" % (lib) ] )
+ return
for suffix in staticSuffixes:
testfile = '%s/lib%s%s' % (path, lib, suffix)
if os.path.isfile(testfile):
static_source_list.append(testfile)
print "Found static library %s as %s" % (lib, testfile)
return
- for testfile in ('%s/lib%s.so' % (path, lib), '%s/lib%s.dylib' % (path, lib)):
- if os.path.isfile(testfile):
- print "Found shared library %s as %s" % (lib, testfile)
- link_flag_list.extend( ["-L%s" % (path), "-l%s" % (lib) ] )
- return
print "Could not find library for %s!!! Looked in %s" % (lib, testPaths)
return