25 lines
891 B
Text
25 lines
891 B
Text
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Phred reads DNA sequencer trace data, calls bases, assigns quality values
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to the bases, and writes the base calls and quality values to output files.
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Trace data is read from chromatogram files in the SCF, ABI, and EST formats,
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even if they were compressed using gzip, bzip2, or UNIX compress.
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Quality values are written to FASTA format files or PHD files, which can be
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used by the Phrap sequence assembly program in order to increase the accuracy
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of the assembled sequence.
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Base calling and quality value accuracies tested for:
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ABI models 373, 377, and 3700
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Molecular Dynamics MegaBACE
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LI-COR 4000
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Base calling accuracies tested for:
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ABI model 3100
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Beckman CEQ
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It contains also a data evaluation program called 'daev'.
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See DAEV.DOC for more information.
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You must obtain the tarball via e-mail to build. See the web site below.
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WWW: http://www.phrap.org/phredphrapconsed.html
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