freebsd-ports/science/py-DendroPy/pkg-plist

480 lines
27 KiB
Text
Raw Normal View History

bin/cattrees.py
bin/long_branch_symmdiff.py
bin/strict_consensus_merge.py
2012-04-14 20:41:27 +02:00
bin/sumlabels.py
bin/sumtrees.py
2014-06-01 23:30:40 +02:00
%%PYTHON_SITELIBDIR%%/dendropy/__init__.py
%%PYTHON_SITELIBDIR%%/dendropy/__init__.pyc
%%PYTHON_SITELIBDIR%%/dendropy/__init__.pyo
%%PYTHON_SITELIBDIR%%/dendropy/coalescent.py
%%PYTHON_SITELIBDIR%%/dendropy/coalescent.pyc
%%PYTHON_SITELIBDIR%%/dendropy/coalescent.pyo
%%PYTHON_SITELIBDIR%%/dendropy/continuous.py
%%PYTHON_SITELIBDIR%%/dendropy/continuous.pyc
%%PYTHON_SITELIBDIR%%/dendropy/continuous.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/__init__.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/beast.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/beast.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/beast.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/dataschema.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/dataschema.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/dataschema.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/fasta.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/fasta.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/fasta.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/ioclient.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/ioclient.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/ioclient.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/newick.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexml.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexml.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexml.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_ncl.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_ncl.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_ncl.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_py.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_py.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexusreader_py.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustokenizer.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustokenizer.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustokenizer.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustreeiter.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustreeiter.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexustreeiter.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/nexuswriter.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylip.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylip.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/phylip.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlparser.py
%%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlparser.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataio/xmlparser.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/__init__.py
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/__init__.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/__init__.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/base.py
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/base.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/base.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/char.py
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/char.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/char.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/dataset.py
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/dataset.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/dataset.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/taxon.py
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/taxon.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/taxon.pyo
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/tree.py
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/tree.pyc
%%PYTHON_SITELIBDIR%%/dendropy/dataobject/tree.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/__init__.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/ape.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/ape.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/ape.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/biopython.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/entrez.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/ete.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/ete.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/ete.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/gbif.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/genbank.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/muscle.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/ncbi.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/ncbi.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/ncbi.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/paup.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/paup.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/paup.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/raxml.pyo
%%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.py
%%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.pyc
%%PYTHON_SITELIBDIR%%/dendropy/interop/seqgen.pyo
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.py
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.pyc
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/__init__.pyo
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/distance.py
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/distance.pyc
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/distance.pyo
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/linearalg.py
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/linearalg.pyc
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/linearalg.pyo
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.py
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.pyc
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/probability.pyo
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.py
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.pyc
%%PYTHON_SITELIBDIR%%/dendropy/mathlib/statistics.pyo
%%PYTHON_SITELIBDIR%%/dendropy/popgensim.py
%%PYTHON_SITELIBDIR%%/dendropy/popgensim.pyc
%%PYTHON_SITELIBDIR%%/dendropy/popgensim.pyo
%%PYTHON_SITELIBDIR%%/dendropy/popgenstat.py
%%PYTHON_SITELIBDIR%%/dendropy/popgenstat.pyc
%%PYTHON_SITELIBDIR%%/dendropy/popgenstat.pyo
%%PYTHON_SITELIBDIR%%/dendropy/reconcile.py
%%PYTHON_SITELIBDIR%%/dendropy/reconcile.pyc
%%PYTHON_SITELIBDIR%%/dendropy/reconcile.pyo
%%PYTHON_SITELIBDIR%%/dendropy/scm.py
%%PYTHON_SITELIBDIR%%/dendropy/scm.pyc
%%PYTHON_SITELIBDIR%%/dendropy/scm.pyo
%%PYTHON_SITELIBDIR%%/dendropy/seqmodel.py
%%PYTHON_SITELIBDIR%%/dendropy/seqmodel.pyc
%%PYTHON_SITELIBDIR%%/dendropy/seqmodel.pyo
%%PYTHON_SITELIBDIR%%/dendropy/seqsim.py
%%PYTHON_SITELIBDIR%%/dendropy/seqsim.pyc
%%PYTHON_SITELIBDIR%%/dendropy/seqsim.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/__init__.py
%%PYTHON_SITELIBDIR%%/dendropy/test/__init__.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/__init__.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/COII_Apes.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/angiosperms.chars.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/angiosperms.chars.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/apternodus.chars.hacked-for-tests.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/apternodus.chars.interleaved.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/apternodus.chars.nexml
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/apternodus.chars.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/avian-ovomucoids.chars.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/avian-ovomucoids.chars.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/bad_names.fasta
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/caenophidia_mos.chars.fasta
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/caenophidia_mos.chars.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/caenophidia_mos.chars.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/codons.nexml
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/crotaphytus_bicinctores.cytb.aligned.nexml
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/crotaphytus_bicinctores.nd2.aligned.nexml
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/interleaved-charsets-all.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/interleaved-charsets-c1.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/interleaved-charsets-c2.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/interleaved-charsets-c3.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/orti.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.csv
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.interleaved.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.simple.interleaved.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.simple.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-1stpos.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-2ndpos.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-3rdpos.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-all.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-coding.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/primates.chars.subsets-noncoding.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.beast.calibrated.xml
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.beast.uncalibrated.xml
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.fasta
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.interleaved.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.phylip
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae.chars.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae_continuous.chars.nexml
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae_continuous.chars.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/chars/pythonidae_continuous.chars.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/mixed/geospiza.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/mixed/multitaxa_mesquite.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/mixed/reference_single_taxonset_dataset.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/apternodus.tre
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/bird_orders.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/deepcoal1.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/feb032009.splits.csv
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/feb032009.trees.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.dendropy-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.paup-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.pre-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.pruned_taxa.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_rooted.retained_taxa.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.dendropy-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.paup-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.pre-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.pruned_taxa.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/incomplete_leaves_unrooted.retained_taxa.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/maj-rule-bug1.trees.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/maj-rule-bug2.trees.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.beast.mcct.meanh.tre
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.beast.mcct.medianh.tre
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.beast.mcct.noedgelens.tree
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.beast.mcmc.trees
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/primates.trees.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.dendropy-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.paup-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.pre-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.pruned_taxa.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_rooted.retained_taxa.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.dendropy-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.paup-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.pre-pruned.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.pruned_taxa.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/prune_unrooted.retained_taxa.txt
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.annotated.bad.nexml
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.annotated.nexml
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.beast.mcmc.trees
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.beast.summary.tre
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.con
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.run1.t
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.run2.t
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.run3.t
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mb.run4.t
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mlboots.newick.tre
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mlboots.nexus.tre
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mle.newick
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.mle.nex
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.random.bd0301.midpoint-rooted.tre
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.random.bd0301.randomly-rooted.tre
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.random.bd0301.tre
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.reference-trees.newick
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.reference-trees.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-block.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/pythonidae.reference-trees.no-taxa-no-translate-block.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/rana.trees.nexus
%%PYTHON_SITELIBDIR%%/dendropy/test/data/trees/treebase_s373.xml
%%PYTHON_SITELIBDIR%%/dendropy/test/support/__init__.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/__init__.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/__init__.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/coverage_analysis.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/coverage_analysis.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/coverage_analysis.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/datagen.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/datagen.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/datagen.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/datatest.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/datatest.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/datatest.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/extendedtest.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/extendedtest.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/extendedtest.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_pruned_trees.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_pruned_trees.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_pruned_trees.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_reference_tree.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_reference_tree.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/generate_reference_tree.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/nexmlvalidator.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/nexmlvalidator.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/nexmlvalidator.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/pathmap.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/pathmap.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/pathmap.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/runlevel.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/runlevel.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/runlevel.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/support/tree_parse_speed.py
%%PYTHON_SITELIBDIR%%/dendropy/test/support/tree_parse_speed.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/support/tree_parse_speed.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_annotations.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_annotations.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_annotations.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_ape.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_ape.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_ape.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_asciitree.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_asciitree.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_asciitree.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_biopython.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_biopython.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_biopython.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_coalescent.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_coalescent.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_coalescent.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_containers.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_containers.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_containers.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_continuous.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_continuous.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_continuous.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_datagen.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_datagen.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_datagen.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_beast.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_beast.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_beast.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_fasta.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_fasta.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_fasta.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_indexing.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_indexing.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_indexing.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_newick.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_newick.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_newick.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexml.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexml.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexml.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexus.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexus.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexus.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexustokenizer.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexustokenizer.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_nexustokenizer.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_phylip.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_phylip.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_phylip.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_tree_rooting.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_tree_rooting.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataio_tree_rooting.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_char_array.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_char_array.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_char_array.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_cloning.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_cloning.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_cloning.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_dataset.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_dataset.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_dataset.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_taxon.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_taxon.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_taxon.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree_list.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree_list.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_dataobject_tree_list.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_distance.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_distance.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_distance.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_ete.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_ete.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_ete.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_fitch.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_fitch.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_fitch.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_linearalg.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_linearalg.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_linearalg.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_nexmlvalidator.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_nexmlvalidator.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_nexmlvalidator.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_paup.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_paup.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_paup.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_popgensim.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_popgensim.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_popgensim.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_popgenstat.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_popgenstat.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_popgenstat.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_reconcile.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_reconcile.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_reconcile.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_scm.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_scm.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_scm.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_seqsim.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_seqsim.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_seqsim.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_split_counting.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_split_counting.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_split_counting.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_split_masking.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_split_masking.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_split_masking.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_splits_on_incomplete_leaf_sets.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_splits_on_incomplete_leaf_sets.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_splits_on_incomplete_leaf_sets.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_statistics.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_statistics.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_statistics.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_sumtrees.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_sumtrees.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_sumtrees.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_calcs.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_calcs.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_calcs.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_from_splits.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_from_splits.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_from_splits.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_manips.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_manips.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_manips.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_metrics.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_metrics.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_metrics.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sims.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sims.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sims.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_structuring.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_structuring.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_structuring.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sums.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sums.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_sums.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_taxa.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_taxa.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_taxa.pyo
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_traversal.py
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_traversal.pyc
%%PYTHON_SITELIBDIR%%/dendropy/test/test_tree_traversal.pyo
%%PYTHON_SITELIBDIR%%/dendropy/treecalc.py
%%PYTHON_SITELIBDIR%%/dendropy/treecalc.pyc
%%PYTHON_SITELIBDIR%%/dendropy/treecalc.pyo
%%PYTHON_SITELIBDIR%%/dendropy/treemanip.py
%%PYTHON_SITELIBDIR%%/dendropy/treemanip.pyc
%%PYTHON_SITELIBDIR%%/dendropy/treemanip.pyo
%%PYTHON_SITELIBDIR%%/dendropy/treesim.py
%%PYTHON_SITELIBDIR%%/dendropy/treesim.pyc
%%PYTHON_SITELIBDIR%%/dendropy/treesim.pyo
%%PYTHON_SITELIBDIR%%/dendropy/treesplit.py
%%PYTHON_SITELIBDIR%%/dendropy/treesplit.pyc
%%PYTHON_SITELIBDIR%%/dendropy/treesplit.pyo
%%PYTHON_SITELIBDIR%%/dendropy/treesum.py
%%PYTHON_SITELIBDIR%%/dendropy/treesum.pyc
%%PYTHON_SITELIBDIR%%/dendropy/treesum.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/ElementTree.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/ElementTree.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/ElementTree.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/__init__.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/bibtex.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/cli.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/cli.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/cli.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/containers.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/containers.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/containers.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/debugging.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/debugging.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/debugging.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/error.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/error.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/error.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/fileutils.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/fileutils.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/fileutils.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/iosys.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/iosys.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/iosys.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/messaging.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/session.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/session.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/session.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/termutils.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/termutils.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/termutils.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/textutils.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/textutils.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/textutils.pyo
%%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.py
%%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyc
%%PYTHON_SITELIBDIR%%/dendropy/utility/vcsinfo.pyo