2013-09-20 17:55:44 +02:00
|
|
|
# Created by: Tony Maher
|
2007-12-14 21:54:47 +01:00
|
|
|
# $FreeBSD$
|
|
|
|
|
|
|
|
|
|
PORTNAME= mummer
|
2012-01-17 01:51:39 +01:00
|
|
|
PORTVERSION= 3.23
|
2007-12-14 21:54:47 +01:00
|
|
|
CATEGORIES= biology
|
|
|
|
|
MASTER_SITES= SF
|
|
|
|
|
DISTNAME= MUMmer${PORTVERSION}
|
|
|
|
|
|
2009-11-27 23:52:30 +01:00
|
|
|
MAINTAINER= sylvio@FreeBSD.org
|
2007-12-14 21:54:47 +01:00
|
|
|
COMMENT= A modular system for rapid whole genome alignment
|
|
|
|
|
|
|
|
|
|
USE_GMAKE= yes
|
|
|
|
|
|
|
|
|
|
PROGRAMS= annotate combineMUMs delta-filter gaps \
|
|
|
|
|
mgaps mummer repeat-match show-aligns \
|
|
|
|
|
show-coords show-diff show-snps show-tiling
|
|
|
|
|
SCRIPTS= dnadiff exact-tandems mapview mummerplot nucmer \
|
|
|
|
|
nucmer2xfig promer run-mummer1 run-mummer3
|
|
|
|
|
DOCUMENTS= COPYRIGHT INSTALL LICENSE README
|
|
|
|
|
|
2013-09-20 17:55:44 +02:00
|
|
|
NO_STAGE= yes
|
2014-01-03 16:46:52 +01:00
|
|
|
|
2014-02-21 14:35:26 +01:00
|
|
|
OPTIONS_DEFINE= DOCS
|
2014-02-10 14:54:26 +01:00
|
|
|
|
2014-01-03 16:46:52 +01:00
|
|
|
.include <bsd.port.options.mk>
|
|
|
|
|
|
2007-12-14 21:54:47 +01:00
|
|
|
do-install:
|
|
|
|
|
.for program in ${PROGRAMS}
|
|
|
|
|
(cd ${WRKSRC} && ${INSTALL_PROGRAM} ${program} ${PREFIX}/bin)
|
|
|
|
|
.endfor
|
|
|
|
|
|
|
|
|
|
.for script in ${SCRIPTS}
|
|
|
|
|
(cd ${WRKSRC} && ${INSTALL_SCRIPT} ${script} ${PREFIX}/bin)
|
|
|
|
|
.endfor
|
|
|
|
|
|
2014-01-03 16:46:52 +01:00
|
|
|
.if ${PORT_OPTIONS:MDOCS}
|
2007-12-14 21:54:47 +01:00
|
|
|
@${MKDIR} ${DOCSDIR}
|
|
|
|
|
.for doc in ${DOCUMENTS}
|
|
|
|
|
(cd ${WRKSRC} && ${INSTALL_DATA} ${doc} ${DOCSDIR})
|
|
|
|
|
.endfor
|
|
|
|
|
.endif
|
|
|
|
|
|
|
|
|
|
.include <bsd.port.mk>
|
