2015-09-19 13:16:51 +02:00
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# $FreeBSD$
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2019-03-15 00:59:47 +01:00
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PORTNAME= cd-hit
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2015-09-19 13:16:51 +02:00
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DISTVERSIONPREFIX= V
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2019-03-15 00:59:47 +01:00
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DISTVERSION= 4.8.1
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Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
2019-07-26 22:46:53 +02:00
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PORTREVISION= 1
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2019-03-15 00:59:47 +01:00
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CATEGORIES= biology
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2015-09-19 13:16:51 +02:00
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2018-01-31 02:07:07 +01:00
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MAINTAINER= jwb@FreeBSD.org
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2015-09-19 13:16:51 +02:00
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COMMENT= Clustering and comparing protein or nucleotide sequences
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LICENSE= GPLv2
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2019-03-15 00:59:47 +01:00
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USES= compiler:openmp gmake shebangfix
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2015-09-19 13:16:51 +02:00
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USE_GITHUB= yes
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2019-03-15 00:59:47 +01:00
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2015-09-19 13:16:51 +02:00
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GH_ACCOUNT= weizhongli
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GH_PROJECT= cdhit
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SHEBANG_FILES= ${WRKSRC}/*.pl
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MAKE_FLAGS= openmp=yes
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post-patch:
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@${REINPLACE_CMD} \
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-e 's|/bin/bash|${LOCALBASE}/bin/bash|g' \
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2019-03-15 00:59:47 +01:00
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${WRKSRC}/cd-hit-2d-para.pl \
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${WRKSRC}/cd-hit-para.pl
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2015-09-19 13:16:51 +02:00
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2016-12-02 12:58:21 +01:00
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post-install:
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2015-09-19 13:16:51 +02:00
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@cd ${STAGEDIR}${PREFIX}/bin && \
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${STRIP_CMD} cd-hit cd-hit-2d cd-hit-454 \
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cd-hit-div cd-hit-est cd-hit-est-2d
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.include <bsd.port.mk>
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